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Properties
| Property Name | Value |
|---|
| Product | hypersensitive-induced response protein |
| Orig transcript id | gnl|cribi|Naga_100196g11.3058.mrna |
| Orig protein id | gnl|cribi|Naga_100196g11.3058 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:782139..784013 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5353 ID=rna5353|Name=rna5353|organism=Nannochloropsis gaditana|type=mRNA|length=2619bp
AGCGACGTCTCCCCATGCAGCAGTGCAGGAACAGCGAGGGCATCCAAACG
GAATATTGAGCCATGTGCAATGCCCCTACCTCTTCTTGCCTTTTCCTCCT
TCGCAAGGAGGCGGACATCACGTCCCCACGAATCGGGGAGGTTTCAATTG
TCCCGCCACGCTGGTTGGAAGTCTTTTTCCCCCTTGGTGTGCTGACGATT
ATAAAGTGTCCAGAGTAGCAGTAAAGCCGGCAGGCCTGGCCTTCGCCTGA
GTTCCTAGCTCTCGCCCGTGGTCCTGGCCCCTTCCTTTCCCGGCGCCCCC
CCTTCCTTCTTGCCACTTTACTTAAAGGCGCTCTCACTGCAATCACGACA
CAGCAAGCCTTCCCTATCGAGCGTCATGGGCGATTCCACGGGTTCAAAAG
ATCGCCAACGCCCAACTTTGAGGTCGACATGCCCGCCTTTCATACCTTCA
AGGATGTTCACGCAGTCCTCCTCCAAGCCAACCTCCTCCCCGAGCCCGTC
CACCGTGTCGTACAACTATCAAGGCCAAAACCAGCTTCAATCCGATTACA
ATCAGTTCTCAAACCAACATCACTATCAGTTCCACCAGTCAGATGGAGAA
AGAGGCGAGCAGCGGCTTAACTTTCGCTATGCACAGCAATTCCAGCCTCA
TCCATTGCAACACACACCTTCCACATTTGTGGACGACTGTCACGACCCGT
CGCCTGCCTTTAATCGGTCTGTCGTATGTTCGTCATTGCCCGTGAATGAC
TCTTCTTTCTGGGACCCCGCTTTGGTAGACTCTCTCAGGCATGCAATCGA
AGCGCTCTTCTCATTGGAGAATTTGAAGACCAACTACACAATTGCCAAAC
ACATGCGGAGTGGCTCGATTCCGGTCACAAAATTATTGTCCTTACCACAA
ATAAGGCAAGTATTGGAGAACGTTGGAGGCACATGCGGCCAGGAGCGCCT
CCTGCTGGCCCAGGCTGTTGCGCACTCTAATTCTGTGGCCACCTGTGAGA
ACGGGAAAAAAATTGGTCGCGTCGATCACTCCTCTGGGGGTGACCTGGCC
TTTCGGTGCGTGGAAATCAGGAGTTTACCGGAAGGAAGTACTGAAGCTAG
TGTACGTGCTCTTGTCGACCGATTCGGGGAGGTCACGCATGTCAAGTTGG
GAGGGATGGACGAAGAGGGAAAAGAGAAGGATGAGAAGCCTCCCTGTCAA
GGAGAGCAGGCTCTCGTCGAATTCGCTGCGCCAGCCGGTGCACTTCAGTG
TGTAGATACATTGAGTGGGACCAAGTCCAACTGGCGTTCGTCGGTGCGGG
TGACCTTCTTGAACGGATTTTCGACGGGTCAGGTGGCCACCATGGCAGGG
TTGGAAATTCTCCACGCAGCTCAGGAGGGAGGGGCGACGACGCTCAAGGG
TCCCCAAAAAGAAAGCACAGGTAGTGGCGGCTCTTGCAGCGCGACAAGCG
GCATCCCTGGGCCAGTGCCGACCACGAGGACAAGCACAGGTACCGGGGGT
CCCGCCTCTACCCTGGCTGGTGCTTGCCTCCTGCCTCCTGTCCTCCCTGA
AGGAGACCACACCGGACACATTGTTGAGCTCGAGGTAGATGCGGCCGGCA
GAGGAGTACGAGGGGTCCTCAAACGGGAAGGCCAGAGACGAACGCTTGTC
TCTTTTCAGTACTCGGATGCGGCACCGTTGGCCGTGGGCGAGCGGGTTGC
GTTTTCTGTCAAGCATATTGACAGCAAGGCCGTCGTCCAGAATTTGGTGG
TAGCTCCCCCCCTACCCTCCACCCCTCTCTCAACTCTCAACTCTGGTGCC
AGGACCGGGGCGGCAAGGCCGTTGGGGGGAAGGGTTATCCCTACGACCCG
GAACGGGGGCATCATGGCCAGAGGTCCGTCGGGCTCGCACGGTTTCCACT
TCCCTCGAACGAGGCCTTCGGGGGAAGTGCTGGAGCTCCTGGACGCTCTG
AAATTGAATGGAGCCCAGCAGAAGGAGGTAGCTAGTAAATAGGATTTCGG
GCATGGAATAGGGGATGGAAGCGGCGTAAGGAAGACATGTGCGGACTTTT
CAAAGCTTTTGCATGCATGCCTTTTGTGATATTTAAAAAATGATTTAAGC
ATATGAATAGGGCCTTTTTGCAAAAATTACGATGAAAGGCTGCAAGAAGG
CCCGTCAAAGTATCCAGAAGGCCTCGACGATTTTATCGACGCGTGTACAT
AGGGAAAATGGAATATTGTGTATTTTCAAAGTGCTTACTTGTGAGTCCAG
CATGGATTCGTACTCGTCGATAGAGAAACTTTTGAGACAGAAGAAAATAG
GACCATAACGTGTTATTGAAAGACAAAACGCAAGAAACAACCTCGATGCA
AGCGGGAAAGAAAGCGTCAAAGAAAAGGATGTCACAGTAATCGTCTCGCT
CGCTCAATGGAGGATCGGGGGCAATGCCTTTCTCATGGTTTTTGATTCGA
TGTAAAGTTCCTCATTCGGACTTGATTCCCGGGCGAAAGGAGAAGCGGAT
GGCCACAGGATCGAAGACATCTTGTGGGAATATCGGGCTTCACGTCAGGC
AACTCAGAGCATCCAGGTCGACAATCCTAGTAAAGCAAAGAAGAAGCAGC
GAAGAACGTTTTTGAGCCC back to topprotein sequence of rna5353 >rna5353-protein ID=rna5353-protein|Name=rna5353|organism=Nannochloropsis gaditana|type=polypeptide|length=296bp
MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLR
IMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAY
VYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTD
LEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSG
VGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVG
NNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQSRFAHARMGR back to topmRNA from alignment at CM002465.1:782139..784013- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5353 ID=rna5353|Name=rna5353|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002465.1:782139..784013- (Nannochloropsis gaditana)
ATGGGGGAGTCTTGCCTTTGCTGTGCTTGTGTCAGCACGGGCGAAGTAGG
TGTGGTTGAGCGGAACTGCAAGTACAATCGGTTGGGGCTACCGGGTATCA
CCCTCATGTGTTGGCCGTTCGAGGTAAGAGGGAATGGATAGCTTGTGGAA
TACAAAGCATGCGAAGAGGGACCGCAGACCAAGCACGAGGAAAAAAAAAT
AGGTTAATGTGGGCATGGTCATGTTGTGCTGGGTTTCCTGGCAAGTATTA
TCCCCTTTGCGTGCCCGAAATAGTGCGACGTTCACATGAGATAAGTCGTC
CTTGTTTCCTTTCGCCCGCAGGCCATGCAATCTCGAGTATCCTTGCGCAT
CATGCAGCTAGACATCCGGGCGGAGACTAAAACCAAAGACAATGTCTTTG
TGATGGTGTATATCTCCATCCAGTATCAGGTATAGTTCCAATGCTGTATG
GGGCTGGCGTGCATCATTTTTTGCTTGGTTCTGCCAGAATTACAGCGCTG
TACGGATATTTCTGGGAACCCATGGCAAGAACTACAATAGCTTTGTCTAC
GTACAACCTCATTTTCCGTTACTCACACTACCTGCCTTCAAAATGTCCCA
CCAACACGCTCTCTTCCCTCTTCCCCACCCCTGACAAGGTCATTCGCGAG
AAGGTCTTCGACGCTGTCTACCGCCTCACGAACCCGCAGGTAAGCCCTGT
TCCAAAATTATGCCAATGGATTTTCTTCTCGATCTCTATCTGACTGTCAA
GCCCCCATACCGGCGTATCTGCCGAGTTGCAGTTTCCTCTGGTCCACCCC
ATCCCCTACCCCTTTCCTCCCCCTCCCTTTCCCCCTCTCTTCTCCAACTC
CTTAACGACTACCCCCAAAGTTATGTCCAACCTTCCTCCACACTTTCCTT
TCCTCGGGCACTACCTCCTCAGGAACAAATTCGCGCCTACGTCTACGACG
TGGTCCGGGCAACCCTGCCCCGCATGTTCCTCGACGAAGCCTTCGAGGCC
AAAGACGACATTGCGCACGCCGTCAAGGCCTCCCTGCAAACGTGCATGGG
CACCTATGGGTACTCGATACTGGTGAGCGTCCCGATGGCGCTTCTCGCTC
TTCTACTTATGCCATGCATGCCTTGTTCATCTGAAAGGGACGGTTCGTGT
CACCTCCGACGCTCAAGGGTCTCGTTGCCCACGCCCTCCTTCTCTTGCCT
GACTTCTCCTCCCTCGCATGCCTCCCATAGAACGCCCTTGTGACGGATCT
AGAACCCGATTTGCGCGTCAAGGCTGCCATGAACGAGATCAACGCCTCGA
AACGCCTGAAGGAAGCTGCCAGGGAGCGGGCGGAAGGGGAGAAGATCGTC
CAAGTCAAGATCGCGGAGGCCAACGCCGAGAGCAAATACCTGTCAGGAGT
GGGGGTGGCGAAGCAGCGTAAGGCGATTGTGGATGGGTTGCGCGAGAGCA
TCCTGGGATTCAGCGGCAACGTGCCGGGGACGACGGCGAAGGACGTCATG
GACCTGATGCTTCTCACGCAGGTAGGGAGGATAGAACGGGAGGGACGAAT
AGAAAGGGGTAAAAGGGGGGAAAAGAGGATAAAACGAGGTGCAACCAGGG
ACAGTCCTGTTTAAAATACGACAGTTTCCCCCTCCGTATTGTTTTACGGT
GTGTTCCTCTGCATGAAGCGTTGTTCTGATCGGCCTTTTTCTTTTTCTCC
CCGCCAGTACTTCGACATGCTGAACCTGGTGGGTAACAATCCCTCCACCA
ACACTGTCTTCATCCCGCACAAACCTGCCCTAGCGCAGAATGGAGAAGAG
GAAGTAGGGGACCAGGTCAGAAATGGGATGTTACAGGCGCAAAGCAGGTT
TGCGCACGCGAGGATGGGGCGGTGA back to topCoding sequence (CDS) from alignment at CM002465.1:782139..784013- >rna5353 ID=rna5353|Name=rna5353|organism=Nannochloropsis gaditana|type=CDS|length=5346bp|location=Sequence derived from alignment at CM002465.1:782139..784013- (Nannochloropsis gaditana)
TACTTCGACATGCTGAACCTGGTGGGTAACAATCCCTCCACCAACACTGT
CTTCATCCCGCACAAACCTGCCCTAGCGCAGAATGGAGAAGAGGAAGTAG
GGGACCAGGTCAGAAATGGGATGTTACAGGCGCAAAGCAGGTTTGCGCAC
GCGAGGATGGGGCGGTGAAACGCCCTTGTGACGGATCTAGAACCCGATTT
GCGCGTCAAGGCTGCCATGAACGAGATCAACGCCTCGAAACGCCTGAAGG
AAGCTGCCAGGGAGCGGGCGGAAGGGGAGAAGATCGTCCAAGTCAAGATC
GCGGAGGCCAACGCCGAGAGCAAATACCTGTCAGGAGTGGGGGTGGCGAA
GCAGCGTAAGGCGATTGTGGATGGGTTGCGCGAGAGCATCCTGGGATTCA
GCGGCAACGTGCCGGGGACGACGGCGAAGGACGTCATGGACCTGATGCTT
CTCACGCAGGAACAAATTCGCGCCTACGTCTACGACGTGGTCCGGGCAAC
CCTGCCCCGCATGTTCCTCGACGAAGCCTTCGAGGCCAAAGACGACATTG
CGCACGCCGTCAAGGCCTCCCTGCAAACGTGCATGGGCACCTATGGGTAC
TCGATACTGGTCATTCGCGAGAAGGTCTTCGACGCTGTCTACCGCCTCAC
GAACCCGCAGGCCATGCAATCTCGAGTATCCTTGCGCATCATGCAGCTAG
ACATCCGGGCGGAGACTAAAACCAAAGACAATGTCTTTGTGATGGTGTAT
ATCTCCATCCAGTATCAGATGGGGGAGTCTTGCCTTTGCTGTGCTTGTGT
CAGCACGGGCGAAGTAGGTGTGGTTGAGCGGAACTGCAAGTACAATCGGT
TGGGGCTACCGGGTATCACCCTCATGTGTTGGCCGTTCGAGTACTTCGAC
ATGCTGAACCTGGTGGGTAACAATCCCTCCACCAACACTGTCTTCATCCC
GCACAAACCTGCCCTAGCGCAGAATGGAGAAGAGGAAGTAGGGGACCAGG
TCAGAAATGGGATGTTACAGGCGCAAAGCAGGTTTGCGCACGCGAGGATG
GGGCGGTGAAACGCCCTTGTGACGGATCTAGAACCCGATTTGCGCGTCAA
GGCTGCCATGAACGAGATCAACGCCTCGAAACGCCTGAAGGAAGCTGCCA
GGGAGCGGGCGGAAGGGGAGAAGATCGTCCAAGTCAAGATCGCGGAGGCC
AACGCCGAGAGCAAATACCTGTCAGGAGTGGGGGTGGCGAAGCAGCGTAA
GGCGATTGTGGATGGGTTGCGCGAGAGCATCCTGGGATTCAGCGGCAACG
TGCCGGGGACGACGGCGAAGGACGTCATGGACCTGATGCTTCTCACGCAG
GAACAAATTCGCGCCTACGTCTACGACGTGGTCCGGGCAACCCTGCCCCG
CATGTTCCTCGACGAAGCCTTCGAGGCCAAAGACGACATTGCGCACGCCG
TCAAGGCCTCCCTGCAAACGTGCATGGGCACCTATGGGTACTCGATACTG
GTCATTCGCGAGAAGGTCTTCGACGCTGTCTACCGCCTCACGAACCCGCA
GGCCATGCAATCTCGAGTATCCTTGCGCATCATGCAGCTAGACATCCGGG
CGGAGACTAAAACCAAAGACAATGTCTTTGTGATGGTGTATATCTCCATC
CAGTATCAGATGGGGGAGTCTTGCCTTTGCTGTGCTTGTGTCAGCACGGG
CGAAGTAGGTGTGGTTGAGCGGAACTGCAAGTACAATCGGTTGGGGCTAC
CGGGTATCACCCTCATGTGTTGGCCGTTCGAGTACTTCGACATGCTGAAC
CTGGTGGGTAACAATCCCTCCACCAACACTGTCTTCATCCCGCACAAACC
TGCCCTAGCGCAGAATGGAGAAGAGGAAGTAGGGGACCAGGTCAGAAATG
GGATGTTACAGGCGCAAAGCAGGTTTGCGCACGCGAGGATGGGGCGGTGA
AACGCCCTTGTGACGGATCTAGAACCCGATTTGCGCGTCAAGGCTGCCAT
GAACGAGATCAACGCCTCGAAACGCCTGAAGGAAGCTGCCAGGGAGCGGG
CGGAAGGGGAGAAGATCGTCCAAGTCAAGATCGCGGAGGCCAACGCCGAG
AGCAAATACCTGTCAGGAGTGGGGGTGGCGAAGCAGCGTAAGGCGATTGT
GGATGGGTTGCGCGAGAGCATCCTGGGATTCAGCGGCAACGTGCCGGGGA
CGACGGCGAAGGACGTCATGGACCTGATGCTTCTCACGCAGGAACAAATT
CGCGCCTACGTCTACGACGTGGTCCGGGCAACCCTGCCCCGCATGTTCCT
CGACGAAGCCTTCGAGGCCAAAGACGACATTGCGCACGCCGTCAAGGCCT
CCCTGCAAACGTGCATGGGCACCTATGGGTACTCGATACTGGTCATTCGC
GAGAAGGTCTTCGACGCTGTCTACCGCCTCACGAACCCGCAGGCCATGCA
ATCTCGAGTATCCTTGCGCATCATGCAGCTAGACATCCGGGCGGAGACTA
AAACCAAAGACAATGTCTTTGTGATGGTGTATATCTCCATCCAGTATCAG
ATGGGGGAGTCTTGCCTTTGCTGTGCTTGTGTCAGCACGGGCGAAGTAGG
TGTGGTTGAGCGGAACTGCAAGTACAATCGGTTGGGGCTACCGGGTATCA
CCCTCATGTGTTGGCCGTTCGAGTACTTCGACATGCTGAACCTGGTGGGT
AACAATCCCTCCACCAACACTGTCTTCATCCCGCACAAACCTGCCCTAGC
GCAGAATGGAGAAGAGGAAGTAGGGGACCAGGTCAGAAATGGGATGTTAC
AGGCGCAAAGCAGGTTTGCGCACGCGAGGATGGGGCGGTGAAACGCCCTT
GTGACGGATCTAGAACCCGATTTGCGCGTCAAGGCTGCCATGAACGAGAT
CAACGCCTCGAAACGCCTGAAGGAAGCTGCCAGGGAGCGGGCGGAAGGGG
AGAAGATCGTCCAAGTCAAGATCGCGGAGGCCAACGCCGAGAGCAAATAC
CTGTCAGGAGTGGGGGTGGCGAAGCAGCGTAAGGCGATTGTGGATGGGTT
GCGCGAGAGCATCCTGGGATTCAGCGGCAACGTGCCGGGGACGACGGCGA
AGGACGTCATGGACCTGATGCTTCTCACGCAGGAACAAATTCGCGCCTAC
GTCTACGACGTGGTCCGGGCAACCCTGCCCCGCATGTTCCTCGACGAAGC
CTTCGAGGCCAAAGACGACATTGCGCACGCCGTCAAGGCCTCCCTGCAAA
CGTGCATGGGCACCTATGGGTACTCGATACTGGTCATTCGCGAGAAGGTC
TTCGACGCTGTCTACCGCCTCACGAACCCGCAGGCCATGCAATCTCGAGT
ATCCTTGCGCATCATGCAGCTAGACATCCGGGCGGAGACTAAAACCAAAG
ACAATGTCTTTGTGATGGTGTATATCTCCATCCAGTATCAGATGGGGGAG
TCTTGCCTTTGCTGTGCTTGTGTCAGCACGGGCGAAGTAGGTGTGGTTGA
GCGGAACTGCAAGTACAATCGGTTGGGGCTACCGGGTATCACCCTCATGT
GTTGGCCGTTCGAGTACTTCGACATGCTGAACCTGGTGGGTAACAATCCC
TCCACCAACACTGTCTTCATCCCGCACAAACCTGCCCTAGCGCAGAATGG
AGAAGAGGAAGTAGGGGACCAGGTCAGAAATGGGATGTTACAGGCGCAAA
GCAGGTTTGCGCACGCGAGGATGGGGCGGTGAAACGCCCTTGTGACGGAT
CTAGAACCCGATTTGCGCGTCAAGGCTGCCATGAACGAGATCAACGCCTC
GAAACGCCTGAAGGAAGCTGCCAGGGAGCGGGCGGAAGGGGAGAAGATCG
TCCAAGTCAAGATCGCGGAGGCCAACGCCGAGAGCAAATACCTGTCAGGA
GTGGGGGTGGCGAAGCAGCGTAAGGCGATTGTGGATGGGTTGCGCGAGAG
CATCCTGGGATTCAGCGGCAACGTGCCGGGGACGACGGCGAAGGACGTCA
TGGACCTGATGCTTCTCACGCAGGAACAAATTCGCGCCTACGTCTACGAC
GTGGTCCGGGCAACCCTGCCCCGCATGTTCCTCGACGAAGCCTTCGAGGC
CAAAGACGACATTGCGCACGCCGTCAAGGCCTCCCTGCAAACGTGCATGG
GCACCTATGGGTACTCGATACTGGTCATTCGCGAGAAGGTCTTCGACGCT
GTCTACCGCCTCACGAACCCGCAGGCCATGCAATCTCGAGTATCCTTGCG
CATCATGCAGCTAGACATCCGGGCGGAGACTAAAACCAAAGACAATGTCT
TTGTGATGGTGTATATCTCCATCCAGTATCAGATGGGGGAGTCTTGCCTT
TGCTGTGCTTGTGTCAGCACGGGCGAAGTAGGTGTGGTTGAGCGGAACTG
CAAGTACAATCGGTTGGGGCTACCGGGTATCACCCTCATGTGTTGGCCGT
TCGAGTACTTCGACATGCTGAACCTGGTGGGTAACAATCCCTCCACCAAC
ACTGTCTTCATCCCGCACAAACCTGCCCTAGCGCAGAATGGAGAAGAGGA
AGTAGGGGACCAGGTCAGAAATGGGATGTTACAGGCGCAAAGCAGGTTTG
CGCACGCGAGGATGGGGCGGTGAAACGCCCTTGTGACGGATCTAGAACCC
GATTTGCGCGTCAAGGCTGCCATGAACGAGATCAACGCCTCGAAACGCCT
GAAGGAAGCTGCCAGGGAGCGGGCGGAAGGGGAGAAGATCGTCCAAGTCA
AGATCGCGGAGGCCAACGCCGAGAGCAAATACCTGTCAGGAGTGGGGGTG
GCGAAGCAGCGTAAGGCGATTGTGGATGGGTTGCGCGAGAGCATCCTGGG
ATTCAGCGGCAACGTGCCGGGGACGACGGCGAAGGACGTCATGGACCTGA
TGCTTCTCACGCAGGAACAAATTCGCGCCTACGTCTACGACGTGGTCCGG
GCAACCCTGCCCCGCATGTTCCTCGACGAAGCCTTCGAGGCCAAAGACGA
CATTGCGCACGCCGTCAAGGCCTCCCTGCAAACGTGCATGGGCACCTATG
GGTACTCGATACTGGTCATTCGCGAGAAGGTCTTCGACGCTGTCTACCGC
CTCACGAACCCGCAGGCCATGCAATCTCGAGTATCCTTGCGCATCATGCA
GCTAGACATCCGGGCGGAGACTAAAACCAAAGACAATGTCTTTGTGATGG
TGTATATCTCCATCCAGTATCAGATGGGGGAGTCTTGCCTTTGCTGTGCT
TGTGTCAGCACGGGCGAAGTAGGTGTGGTTGAGCGGAACTGCAAGTACAA
TCGGTTGGGGCTACCGGGTATCACCCTCATGTGTTGGCCGTTCGAG back to top
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