EWM25334.1, cds5340 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|585107093|gb|EWM25334.1| (hypersensitive-induced response protein [Nannochloropsis gaditana]) HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query: 1 MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQSRFAHARMGR 296
MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQSRFAHARMGR
Sbjct: 1 MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQSRFAHARMGR 296
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|553182727|ref|XP_005853774.1| (hypersensitive-induced response protein [Nannochloropsis gaditana CCMP526] >gi|553187343|ref|XP_005854590.1| hypersensitive-induced response protein [Nannochloropsis gaditana CCMP526] >gi|422294471|gb|EKU21771.1| hypersensitive-induced response protein [Nannochloropsis gaditana CCMP526] >gi|422295285|gb|EKU22584.1| hypersensitive-induced response protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 525.783 bits (1353), Expect = 0.000e+0 Identity = 260/296 (87.84%), Postives = 260/296 (87.84%), Query Frame = 0
Query: 1 MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQSRFAHARMGR 296
MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFE VIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQSRFAHARMGR
Sbjct: 1 MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFE------------------------------------VIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQSRFAHARMGR 260
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|299470496|emb|CBN78487.1| (flagellar associated protein [Ectocarpus siliculosus]) HSP 1 Score: 346.665 bits (888), Expect = 9.213e-116 Identity = 164/281 (58.36%), Postives = 210/281 (74.73%), Query Frame = 0
Query: 7 CCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQS 287
C CV E+GV+ER KY L PG T + WP +++ +++S R+ QLD+R ETKTKDNVFV +S+QYQ I+ K++DA YRLT+PQ QIR+YVYDVVR+TLP++ LD+AF++K+DIA AVK L+ M YGY IL ALVTD++PD RVK AMNEINASKRL+EAA +AE +KI+QVK AEA AESKYLSGVGV++QRKAIVDGLR+S+ FS + GT+ KDVMDL+LLTQYFDML VG + TVF+PH P + +R+G +Q Q+
Sbjct: 75 CFQCVPNAEIGVIERLGKYQGLAQPGFTCILWPLDSIVAKLSTRVQQLDVRMETKTKDNVFVTAVVSVQYQPIKSKIYDAFYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEEVMQEYGYQILQALVTDMDPDARVKGAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAP----QSVASLQGAMRDGFMQGQA 351
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|299470497|emb|CBN78488.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 342.813 bits (878), Expect = 1.267e-113 Identity = 163/283 (57.60%), Postives = 211/283 (74.56%), Query Frame = 0
Query: 5 CLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQS 287
C CVS EVGVVER K+ L PG+ + WP + + +++S R+ QLD+R ETKTKDNVFV +S+QYQ I+EK++DA YRLT+PQ QIR+YV+DVVR+TLP++ LD+AF++K+DIA AVK L+ M YGY IL ALVTD++PD RVK AMNEINASKR++EAA +AE +KI+QVK AEA AESKYLSGVGV++QRKAIVDGLR+S+ F+ + GT+ KDVMDL+LLTQYFDML VG + TVF+PH P + +R+G +Q Q+
Sbjct: 114 AFCFQCVSNSEVGVVERLGKFTGLAAPGLNCILWPIDVIVAKISTRVQQLDVRMETKTKDNVFVTAVVSVQYQPIKEKIYDAFYRLTDPQAQIRSYVFDVVRSTLPKLDLDQAFDSKEDIAVAVKNQLEEVMKEYGYQILQALVTDMDPDPRVKEAMNEINASKRMREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAP----QSVAAIQAAMRDGFMQGQA 392
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|219117457|ref|XP_002179523.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409414|gb|EEC49346.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 326.635 bits (836), Expect = 4.924e-109 Identity = 159/281 (56.58%), Postives = 206/281 (73.31%), Query Frame = 0
Query: 5 CLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQA 285
CLCC +ST EVGV+ER KY+RL PG+ ++C P E++ ++S R+ QL++R ETKT DNVF+ +S+QYQV+R+KV++A Y L+NP QI A+VYDV+R+ LP + LD FEAK+D+A AVK +L M TYGY I+ L+TDL+PD RVK AMNEIN+SKRLK A ERAEG+KI++VK AEA AE+KYLSGVGVAKQRKAIVDGLR SI+ FS +V G++ K+VMDL+LLTQYFDM+ VG T F+P D +RN +LQ+
Sbjct: 2 CLCCFTISTAEVGVIERWGKYSRLVQPGLNVICCPMESLVGKLSFRVQQLNVRVETKTLDNVFITSVVSVQYQVLRDKVYEAFYALSNPARQITAHVYDVMRSQLPTLELDAVFEAKEDLALAVKNALSEIMTTYGYQIVQTLITDLDPDQRVKNAMNEINSSKRLKYAVAERAEGDKILKVKGAEAEAEAKYLSGVGVAKQRKAIVDGLRTSIVDFSDHVEGSSTKEVMDLLLLTQYFDMIRDVGAESHCKTTFVPSSRG--------APDDMRNALLQS 274
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|1210518716|dbj|GAX22592.1| (hypothetical protein FisN_14Hh224 [Fistulifera solaris]) HSP 1 Score: 322.783 bits (826), Expect = 1.586e-107 Identity = 160/279 (57.35%), Postives = 198/279 (70.97%), Query Frame = 0
Query: 7 CCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQA 285
CC + T EVGVVER ++RL PG P E + ++S R+ QL++R ETKT DNVF+M +S+QYQV+REKVFDA Y LTNP +QI A+VYDV+R+ LP + LD FEAK+++A VK +L M YGY I+ L+TDL+PD RVK AMNEIN+SKRLK A ERAEG+KI+QVK AEA AESKYLSGVGV+KQRKAIVDGLR SI+ FS NV G KDVMDL+LLTQYFDM+ VG+ P T F+P + ++RN +LQA
Sbjct: 5 CCFIIQTAEVGVVERFGLFSRLVQPGFNYTICPMEQLVGKLSFRVQQLNVRVETKTLDNVFLMAVVSVQYQVLREKVFDAYYALTNPTQQITAHVYDVMRSELPSLELDAVFEAKEELALTVKNALAETMTNYGYQIVQVLITDLDPDQRVKNAMNEINSSKRLKYAIAERAEGDKILQVKAAEAEAESKYLSGVGVSKQRKAIVDGLRSSIVDFSSNVQGAGTKDVMDLLLLTQYFDMIQSVGSAPHCKTTFVP--------SSSKDSSEMRNALLQA 275
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|1072226262|gb|OEU11005.1| (Band_7-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 322.398 bits (825), Expect = 2.000e-107 Identity = 158/281 (56.23%), Postives = 204/281 (72.60%), Query Frame = 0
Query: 7 CCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQS 287
CC +ST EVGV+E+ K++RL PG+ + P E + R+S R+ Q+D+R ETKT DNVF+ +S+QYQV+RE VF+A Y LTNP +QI A+VYDV+RATLP + LD AFEAK+++A +VK +L +YGY IL L+TDL+PD RVK AMNEIN+SKRLK A ERAEG+KI+QVK AEA AE+ YLSGVGV++QRKAIVDGLRESI+ FS AKDVMDL+LLTQYFDM+ VG++P T F+P +GD++R +LQA +
Sbjct: 5 CCYTISTSEVGVIEKWGKFSRLSQPGLGIAICPMEQLVGRLSFRVQQIDVRVETKTLDNVFLTAVVSVQYQVLRENVFEAFYALTNPAQQITAHVYDVMRATLPTLELDAAFEAKEELASSVKNALSESFTSYGYQILQTLITDLDPDQRVKNAMNEINSSKRLKYAVAERAEGDKILQVKSAEAGAEALYLSGVGVSRQRKAIVDGLRESIVEFSSETTA-NAKDVMDLLLLTQYFDMIRDVGSSPHCRTTFVPTS--------RNMGDEIRGSLLQANA 276
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|397638309|gb|EJK73006.1| (hypothetical protein THAOC_05399 [Thalassiosira oceanica]) HSP 1 Score: 321.242 bits (822), Expect = 6.319e-107 Identity = 153/275 (55.64%), Postives = 204/275 (74.18%), Query Frame = 0
Query: 1 MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVG 275
M CLC C+ EVGVVE ++ RL G + + WP +++ R+SLR+ QLD+ ETKTKDNVFV V +++QY+V+ E +DA YRLT+P QI+AYV+DV+R+T+PRM LD+AFE+KDDIAH+V SLQ M YGYSI+N LVTDL PD +VKA+MNEINA++RLKEAA +AE +K+ QVK AEA+AE++YLSG+GVA+QRKAIV GL+ S+ FS V G KDVMD++LL+QYFD L+ VG N++ + H PA N +++VG
Sbjct: 1 MWNGCLCLQCIREKEVGVVEDLGQFKRLVGEGPSCILWPLQSVTGRLSLRVQQLDVLCETKTKDNVFVQVGVAVQYRVVTESAYDAWYRLTSPTSQIQAYVFDVIRSTIPRMELDQAFESKDDIAHSVLESLQQVMKDYGYSIVNTLVTDLAPDTKVKASMNEINAARRLKEAASHQAEADKVRQVKAAEADAEARYLSGLGVARQRKAIVKGLQASVSEFSSEVEGADPKDVMDILLLSQYFDTLSTVG----ANSLILEHDPATVANLQQQVG 271
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|302756863|ref|XP_002961855.1| (hypothetical protein SELMODRAFT_140325 [Selaginella moellendorffii] >gi|302798074|ref|XP_002980797.1| hypothetical protein SELMODRAFT_154087 [Selaginella moellendorffii] >gi|300151336|gb|EFJ17982.1| hypothetical protein SELMODRAFT_154087 [Selaginella moellendorffii] >gi|300170514|gb|EFJ37115.1| hypothetical protein SELMODRAFT_140325 [Selaginella moellendorffii]) HSP 1 Score: 320.472 bits (820), Expect = 1.732e-106 Identity = 157/288 (54.51%), Postives = 210/288 (72.92%), Query Frame = 0
Query: 1 MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEA-MQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQS 287
MG+ C CC V V + ER K++ + PG + W F + + ++LRI QLD+R ETKTKDNVFV V S+QY V++ DA Y+L+NP+EQI+AYV+DVVRA +P+M LD+ FE K+++A +V+ L+ M YGY I+ L+ D+EPD V+ AMNEINA+ RL+ AA E+AE EKI+QVK AEA AESKYLSGVGVA+QR+AIVDGLRES+L FS NVPGT+AKDVMD++LLTQYFD + +G ++TVF+PH P ++ V +Q+RNGMLQA++
Sbjct: 1 MGQMC-CCFQVPQSRVAIKERWGKFDEVLDPGCHCVPWIFGSNITGSLNLRIQQLDVRCETKTKDNVFVTVVASVQYAVVQADAMDAYYKLSNPREQIQAYVFDVVRACVPKMILDDVFEQKNEVAKSVEDELEKAMAAYGYRIVQTLIVDVEPDKTVRNAMNEINAAARLRVAANEKAEAEKILQVKRAEAEAESKYLSGVGVARQRQAIVDGLRESVLAFSHNVPGTSAKDVMDMVLLTQYFDTMKEIGATSKSSTVFLPHGPGAVRD----VAEQIRNGMLQAEA 283
BLAST of EWM25334.1 vs. NCBI_GenBank
Match: gi|695045905|ref|XP_009410758.1| (PREDICTED: hypersensitive-induced response protein 1-like [Musa acuminata subsp. malaccensis] >gi|695045907|ref|XP_009410759.1| PREDICTED: hypersensitive-induced response protein 1-like [Musa acuminata subsp. malaccensis] >gi|695045909|ref|XP_009410760.1| PREDICTED: hypersensitive-induced response protein 1-like [Musa acuminata subsp. malaccensis] >gi|1091747338|ref|XP_018684998.1| PREDICTED: hypersensitive-induced response protein 1-like [Musa acuminata subsp. malaccensis] >gi|1091747342|ref|XP_018684999.1| PREDICTED: hypersensitive-induced response protein 1-like [Musa acuminata subsp. malaccensis]) HSP 1 Score: 319.316 bits (817), Expect = 3.595e-106 Identity = 153/289 (52.94%), Postives = 209/289 (72.32%), Query Frame = 0
Query: 1 MGESCLCCACVSTGEVGVVERNCKYNRLGLPGITLMCWPF-EAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFIPHKPALAQNGEEEVGDQVRNGMLQAQSR 288
MG++ LCC V V + E K+ + LPG M W + + R+SLR+ QLD++ ETKTKDNVFV V S+QY + EK DA Y+L+N + QI+AYV+DV+RA++P++ LD+AFE K+DIA AV+ L+ M YGY I+ L+ D+EPD+ VK AMNEINA+ RL+ AA E+AE EKI+Q+K AE AE+KYLSG+G+A+QR+AIVDGLR+S+LGFS NVPGTTAKDVMD++L+TQYFD + +G ++ VFIPH P ++ V DQ+R+G+LQA +
Sbjct: 1 MGQA-LCCVTVDQSSVAIKESFGKFEDVLLPGCHCMPWFLGKKVSGRLSLRLQQLDVKCETKTKDNVFVNVVASVQYHALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDDAFEQKNDIAKAVENELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIIQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLITQYFDTMKEIGAQSKSSAVFIPHGPGSVRD----VADQIRDGLLQASTH 284 The following BLAST results are available for this feature:
BLAST of EWM25334.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|