rna5349, rna5349 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5349
Unique Name	rna5349
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2071
Alignment location	CM002465.1:775941..777506 +

Link to JBrowse

Properties


Property Name	Value
Product	2-oxoisovalerate dehydrogenase alpha mitochondrial expressed
Orig transcript id	gnl\|cribi\|Naga_100196g5.3060.mrna
Orig protein id	gnl\|cribi\|Naga_100196g5.3060
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:775941..777506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100196g5	gene5170	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5349	rna5349-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25336.1	cds5336	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:775941..777506+
coding sequence from alignment at CM002465.1:775941..777506+

mRNA sequence

>rna5349 ID=rna5349|Name=rna5349|organism=Nannochloropsis gaditana|type=mRNA|length=2071bp
TACCCCCCTCCCTTCGGCGATTTCAAGTTCATGTCACCAAACCGACACAC
AGTGGCAAGTCGAACGGGGCACTCGATCCTTGCCTCCGCCGAGGATTGCC
AGGCCTTGCACACGCCTGGGGCTTCGTAAATTCGAAGCGTCTCGTTTCTC
GTGTGGAAGCACGCATGCCCGTCAGTGCACGCAGAGCCGCCCTCCACTTG
TTAAAGCAACGAGACTATGAGTTCATCCACTTAGCTAGCAATCAACTCCC
TTCTGCTCGATCCATTCCCTTCCGCATTCTTAGGCCATGCACGTGGGGAG
CCTTTTGGCATGGCTGACGCTCTTGTGCTGCTGTTATAGTTGTCGCCTGG
CTTATGTGACATCCCCCCTTGCCCCAGGACGGGGCCACGGGCAGCGGACG
GTGACTATTACCCCGCAACGGCCCGTACCTCTTCTATTGCAACCGCTGAC
AAACTATCCTTGCGCCACGCTTTCTGCCCGTCGTTCCTCTTTACCCGTAT
TTTCATCCTTTTCGTCCTTCTTTGCCGAGCGGGCTGGAGTGAACGCGACG
ACCAGCGGGGATAACTTGGCATATGAACTGCGCCTTCTGGAGCTGGAGAG
TCGGCTCTTGAAATTGGAGGGAATCACGGGGCGGACGGCTAGCTCAGGCG
GTGGTGGGGCAAGCGGGGGAAAAAAACGGGGGGGAACGTGCAAGGTGCAA
CGGGCACCGGTAGCAGCGCTTTCAACCACATTCTTCCAGACGGGGAGCAG
CTGTTGTTGGGCTGCACGTTCGCCGGGGCCGTGCTCGGCTTATTCGTGGG
CCGCGCCTTATTTAACCGACAAATGTACCTGGGCAGTGTAGGGGGTGCTG
TTTTGGGCGTGCATTTTTTCAACAAGGAAGGGAACTTCGGGGCCTGTATC
CGGGCCCTGGGGAAGCTGGTGCTCTACGCCTGCGACCGGTTGGCCTACGC
CTGGTCCGAGCTCAAGTTCAATTGGAAGGCCTGGAGGGTGTACGAGCGGA
GCTTCAAGAAGCTGGAGAGCCTGGACAAGGAGATGCAGGTGTCGAAGAAG
ATCAAGGCGTGGGACCAGCAGTACCAGGTGTCCACCAACCTGAACGGGTG
GTGGCGGAAGTTCCAAACCTCGGCCAAGGGCCTGGAGGAGAGCTTGAAGG
AGCAGGCGGTCTACTGGCAGCGCACCCAGCGGCTCAGGGACGAGCAGCGG
CAAGCGCAGATGATCCACCAGGAGATTCAGCGGCAGCAGGAGAGGGAACG
GGCCCGGCAAAACGGGGGGGGGGTAAGCGGAGGGGCCTTTCAATCCACCA
GCGTCGAGACCGAGGCCCCGGCGTCGCTTCGACCCGAGTCGGAGCAAGGC
GAAGGAGCGCGGGGCCAAGGTCGAGGGGAGGGCGTGCCTCTGACCGCGCA
GGGTCCAAGGCTCGGAGCCGGGGGCGGGTGGTCCGCCCCTCGCGCACAGG
CCTCCGCCCTTACCCCTGCCAGTGGCCCCCAGCCGGCCTCCCACCCCTCT
CATCCCGGCGCCTCCCCACCTTCCCATTTCTCTTCCACCTCGTCTCGCCA
GGGCCTCGACACGCCGGGGGCAGTGGGAGGTCCGGGCGGGCGCCCTCCCC
CTCCTTCCTCCCCGGGCCTCGCCTTTGAGTTCAACCGTTTCGTCAAGAGC
CTCGGTGGAGCCACGAGCGGCATCTCTCGCTCCTCCAATCCCGCGGCCTC
TCCCGTACCTTCGCCTTCCTCCCCCGCCTCCCCTCCTTCCCTCACTGTAA
ATAGCATCGAGGGACTCGAGGGCCAGGCGCGGTCCATGGATGCTGGTGCC
CCGCCGCCCCACGTGGACGAGCGTGAGCCGTTCAATCTGTCCTCCCCCTC
TTTGGGAAGTGGCGATGTGGAAAAGAAAGGTTGGGAGGGCGGGAGCGAAG
TAAACATGTAAAGGAGGGGGGTCTCGGCAAGGGGGGCGGCGTCCTCAGAG
GGCCGGGCTAGGAGGGAGGAGAGACCCGAGGGCGCTGTCGCTTTGCTTGC
AAGGAAATGGAAAAGTGTGATGCTAGGGCTCCGTAAAGTGTTTTTAATTT
ACTGCTCAAGGGCGTGTGAGA

protein sequence of rna5349

>rna5349-protein ID=rna5349-protein|Name=rna5349|organism=Nannochloropsis gaditana|type=polypeptide|length=521bp
MYCRPLRYILSQHAFAIQSQRGLRRLNLSAAGMQHGHRGSRPGCGRRLLS
LQPTPNPPQSRSTAEAVPADDPGSIELSSTVPSEHEGEGFDGTASQRTAS
SAAPPQSCVLPPTEASHGDFPGAPPEGIPFTSSLHVVAPEEHVVWPVYRV
LETDGRVRSGALVPDLDQAVVRRMYHTMVRLQAMDTIFYNAQRQGRISFY
ITCTGEEATHVGSAAALRPEDPVLAQYREGGVLMWRGFTLDQFADQCFSN
RDDLGKGRQMPIHYGTAALHFQTISSPLATQIPHAVGAAYGIKLEDASKS
AEDKRCVICFFGEGAASEGDFHAALNFAATLQAPVLFFCRNNGYAISTPV
KEQFRGDGVVSRAPGYGMHALRVDGNDVLAVYHACQAAREVCVREGKPVL
VEAITYRVGHHSTSDDSTRYRSLSEIKQWHGQEDPLRRFRAWMEGKGWWS
DEDEVQLRDEERMAVLRALERAEVKPKPGMEALFEDVYREKPWHLREQEA
GLRDHVEKYPDVYKEGTGKGH

mRNA from alignment at CM002465.1:775941..777506+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5349 ID=rna5349|Name=rna5349|organism=Nannochloropsis gaditana|type=mRNA|length=1566bp|location=Sequence derived from alignment at CM002465.1:775941..777506+ (Nannochloropsis gaditana)
ATGTACTGTCGCCCGCTACGGTACATTTTAAGCCAGCATGCATTTGCCAT
ACAGTCACAGAGGGGGCTGCGTAGGCTGAATTTATCAGCCGCAGGGATGC
AACATGGTCACCGGGGCTCGAGGCCTGGGTGTGGACGCCGATTGCTTAGT
CTACAACCTACACCGAACCCGCCTCAGTCACGCTCCACCGCCGAAGCTGT
ACCCGCCGATGACCCCGGCTCCATAGAGCTCTCAAGCACCGTGCCTTCGG
AgcatgagggagagggatttgATGGCACGGCGTCGCAACGGACAGCATCG
TCGGCTGCACCGCCGCAGTcttgcgtcctccctccaacagAGGCTTCTCA
CGGTGACTTTCCCGGCGCACCGCCCGAGGGGATTCctttcacctcctcgc
tTCACGTGGTTGCCCCCGAAGAGCATGTAGTCTGGCCTGTCTACCGGGTG
CTCGAGACGGACGGCCGTGTGCGTTCCGGGGCTCTCGTTCCCGACCTTGA
CCAAGCTGTTGTCCGCCGCATGTACCACACGATGGTACGGCTGCAAGCCA
TGGACACCATTTTCTACAACGCGCAGCGGCAAGGTCGGATTTCCTTCTAC
ATCACCTGtacgggggaggaagccacaCACGTGGGCAGtgccgccgccct
ccggccTGAGGACCCGGTCTTGGCCCAGTaccgggagggcggggtcttGA
TGTGGCGCGGGTTCACCCTCGATCAGTTTGCGGACCAATGCTTCTCCAAC
CGGGACGACCTGGGGAAAGGCCGGCAGATGCCCATCCACTACGGCACGGC
CGCCTTGCACTTCCAGAccatttcttcccccctcgccacccaGATCCCCc
acgcggtgggggcggcctACGGGATCAAGCTCGAGGACGCTTCCAAGTCG
GCGGAAGACAAACGCTGTGTCATCTGTTTCTTCGGGGAAGGGGCCGCGAG
CGAGGGCGACTTCCACGCGGCCCTCAATTTCGCCGCCACCTTGCAAGCCC
CCGTGTTGTTCTTCTGTCGCAACAACGGGTACGCCATCAGCACGCCCGTC
AAGGAGCAATTTCGTGGGGATGGTGTCGTCTCCCGCGCCCCCGGCTATGG
CATGCATGCCCTGAGGGTGGACGGGAACGACGTCTTGGCCGTGTATCATG
CCTGTCAGGCGGCTCGGGAGGTGTGCgtccgggagggaaagcccgtgctg
gtggaggccataACCTATCGCGTGGGGCACCACTCGACCTCGGACGACTC
CACGCGCTACCGGTCCTTGTCGGAAATTAAACAGTGGCACGGACAGGAGG
ATCCCCTCCGCCGGTTTCGGgcctggatggaggggaaaggttGGTGGtcg
gacgaagacgaggtcCAACTGCGAGACGAGGAGCGGATGGCGGTGCTACG
GGCTCTTGAGCGTGCGGAAGTGAAGCCAAAACCGGGAATGGAGGCTTTGT
TCGAAGATGTGTACCGGGAGAAGCCCTGGCATTTGCGCGAACAGGAGGCG
GGACTGCGGGATCACGTTGAAAAGTACCCGGATGTGTACAAAGAGGGCAC
GGGGAAGGGGCACTGA

Coding sequence (CDS) from alignment at CM002465.1:775941..777506+

>rna5349 ID=rna5349|Name=rna5349|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002465.1:775941..777506+ (Nannochloropsis gaditana)
ATGTACTGTCGCCCGCTACGGTACATTTTAAGCCAGCATGCATTTGCCAT
ACAGTCACAGAGGGGGCTGCGTAGGCTGAATTTATCAGCCGCAGGGATGC
AACATGGTCACCGGGGCTCGAGGCCTGGGTGTGGACGCCGATTGCTTAGT
CTACAACCTACACCGAACCCGCCTCAGTCACGCTCCACCGCCGAAGCTGT
ACCCGCCGATGACCCCGGCTCCATAGAGCTCTCAAGCACCGTGCCTTCGG
AgcatgagggagagggatttgATGGCACGGCGTCGCAACGGACAGCATCG
TCGGCTGCACCGCCGCAGTcttgcgtcctccctccaacagAGGCTTCTCA
CGGTGACTTTCCCGGCGCACCGCCCGAGGGGATTCctttcacctcctcgc
tTCACGTGGTTGCCCCCGAAGAGCATGTAGTCTGGCCTGTCTACCGGGTG
CTCGAGACGGACGGCCGTGTGCGTTCCGGGGCTCTCGTTCCCGACCTTGA
CCAAGCTGTTGTCCGCCGCATGTACCACACGATGGTACGGCTGCAAGCCA
TGGACACCATTTTCTACAACGCGCAGCGGCAAGGTCGGATTTCCTTCTAC
ATCACCTGtacgggggaggaagccacaCACGTGGGCAGtgccgccgccct
ccggccTGAGGACCCGGTCTTGGCCCAGTaccgggagggcggggtcttGA
TGTGGCGCGGGTTCACCCTCGATCAGTTTGCGGACCAATGCTTCTCCAAC
CGGGACGACCTGGGGAAAGGCCGGCAGATGCCCATCCACTACGGCACGGC
CGCCTTGCACTTCCAGAccatttcttcccccctcgccacccaGATCCCCc
acgcggtgggggcggcctACGGGATCAAGCTCGAGGACGCTTCCAAGTCG
GCGGAAGACAAACGCTGTGTCATCTGTTTCTTCGGGGAAGGGGCCGCGAG
CGAGGGCGACTTCCACGCGGCCCTCAATTTCGCCGCCACCTTGCAAGCCC
CCGTGTTGTTCTTCTGTCGCAACAACGGGTACGCCATCAGCACGCCCGTC
AAGGAGCAATTTCGTGGGGATGGTGTCGTCTCCCGCGCCCCCGGCTATGG
CATGCATGCCCTGAGGGTGGACGGGAACGACGTCTTGGCCGTGTATCATG
CCTGTCAGGCGGCTCGGGAGGTGTGCgtccgggagggaaagcccgtgctg
gtggaggccataACCTATCGCGTGGGGCACCACTCGACCTCGGACGACTC
CACGCGCTACCGGTCCTTGTCGGAAATTAAACAGTGGCACGGACAGGAGG
ATCCCCTCCGCCGGTTTCGGgcctggatggaggggaaaggttGGTGGtcg
gacgaagacgaggtcCAACTGCGAGACGAGGAGCGGATGGCGGTGCTACG
GGCTCTTGAGCGTGCGGAAGTGAAGCCAAAACCGGGAATGGAGGCTTTGT
TCGAAGATGTGTACCGGGAGAAGCCCTGGCATTTGCGCGAACAGGAGGCG
GGACTGCGGGATCACGTTGAAAAGTACCCGGATGTGTACAAAGAGGGCAC
GGGGAAGGGGCACTGA

Synonyms

Publications