rna5340, rna5340 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5340
Unique Name	rna5340
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3371
Alignment location	CM002465.1:757357..758515 +

Link to JBrowse

Properties


Property Name	Value
Product	putative domain SAYSvFN
Orig transcript id	gnl\|cribi\|Naga_100005g140.6738.mrna
Orig protein id	gnl\|cribi\|Naga_100005g140.6738
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:757357..758515 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g140	gene5161	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5340	rna5340-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25444.1	cds5327	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:757357..758515+
coding sequence from alignment at CM002465.1:757357..758515+

mRNA sequence

>rna5340 ID=rna5340|Name=rna5340|organism=Nannochloropsis gaditana|type=mRNA|length=3371bp
TTAAAAGCCCGAGAAGAGATTTCACGGCAGTGCGGTGGGATGAAGCCGCC
TTCATGACCGCACGACACGGGCATGGTAGATCACACGGGGTTCGGCTTCC
TTTCGCGTGCGTAGATGACCTCATTGACTCCCCGGATGGTGCGACTACTC
TCCGGGTGTCCGTTTTGTCTAAATTGCCGGGCTTATCCAGTCTCGTCGGC
GAGATTCACTATCATTTCTCCCCCCTTCTAAGAGCAACCACGACCACGCG
CAGATACGCAGGTCGCGCCCCGCAGGACCCTCGCCCCGATCCGCTTTGTA
TCACGGAGATATTCGAAGGGCATGGGAGGCGAAGCCAGGGTTGTGATGCG
GACGACTTTGGCAGACTTAACTCTTCAGGCTTGTTGGCAATTCCCTTGTG
CTTCTTTCTTCTTTGCCACCCACCAACTGAATCTTCCGCGCCCTCTTGGT
GTTTTCCCTTTCGCTCGGCGGAAACAATGGCGCGCAATCATTGTGCAGTT
TCTCATTCTCATGTGTACCTCACTAACAGCACGAAAGCTTCCTGTACGAG
GAGGTGCGCAGGGGCAAGGAGTAAGCGCCTTCCCTTTCACGTTACAGGAT
TTGATTGTCGCTCGACTAGGCTACATTCAACGTGCGCTTTACCCCAAGCA
AGAAGCATTTCAATTGAGCCATGAAGTTCGGTTTGTATTTGAAAGAGAAT
GTGGTGGATGAATGGAAGGAGTTCTACCTTCAGTACGACAAGCTGAAGCG
CAAAATTCGGCAATTAGCGGAAGTGGAGAGCAAGGCCATGGCCCCCGAGC
CTCATCTGACAGGAAAGATAGGACTGTCCCTTACGGTCCCCCCCCCCACG
AATGCGGCTGCGCAACCTTTAGGGCGGGCGGGTAAGAGCGCAGCGGACGG
AGAGTCGGACGATGAAGATTCGTCGGGCAACGATGACAGTGACCCCACCC
CGCCTACGCATGAAGCCTTCTTCGACATGTTGGAGAAAGAGATCCAGAAG
GTCCGCACCTTCACGGACTTGAAGGTGACGGAAATCCGAGCCAAGCTGCG
CGACGTGGGGAAGCGCCTCAAGGCGACCAAGGGCGCTAGCGGCGACCAAC
CCGTGACGGAGGCCGTGAGGAAGGAAGTGGACGAGGTCGGGGAACAGTTC
TTACGGCTGGAGAAGTACGTCAATTTGAACTACACGGGCTTCCACAAGAT
CCTGAAGAAGCACGATCGGTGGCTGACAAACCCTTGTCGCTCCTTCTACC
TGCAGCGCCTCCAGAACCACAACTGGACGCAGGGGGACTACTCGGACGTG
GTGGTGACCATGAGTCAGATCTGGGCGGCCCTCCGCGGGGACGTGGCCCC
CGAAGCCACCGCCACGGAGTCCCAAGAATTCGTCCGGACCACGACCAAGT
ACTGGGTGCAGGACGAGGACATCTCCCAGCTCAAGTGGTTCGTGCTGCAG
CACCTGCCCGTTCTGCTCCAGGAGAGCATGGGGACCAAGTCCGACTCCCA
GCTCGTCAACTCCGTCTACCTCGACAACGCGACCTTGGAGCTCTACAAGG
GTCGGCTGGACAAGACGCCGGGGGCGATCGCCGTCCGCTTCCGTTGGTAC
GGCTCTGGGATCCCGGAACTGGTCTTTGTGGAGCGCAAGACCCACCGCGA
GGCTTGGACGCAGGAGATGTCGGTCAAGGAGCGATTCACCGTGCACCCCT
CCGAGGTCCCCTCCATCCTGAACGGCACCTTCGACAAGGCCCCGCACGTG
GCGAAGATGCGGGCCAAGGGTAAGTCGGACAAGGAAATGGAGGACTGGGA
CGTCCTGGTCACGGAGGTCTGCCAGGCAATCATCTGCAAGCAGCTCGTGC
CCACGCTTCGCACCCAGTACATGCGCACGGCCTTCCAGATCCCCTTTGAC
GCGACGGTTCGCATCTCGCTGGACACGAATTTGTGCATGCTCACGGAGAC
GGGCCGGCTGGGGATGGAGAAGGACCGTTGGTTCCGCGACCCGTCCAAGC
CGGTGCCCCGCAACGAGATCACCCGCTTCCCGCACGCCGTTTTGGAGGTG
AAGCTCCAGCTCAAGGACGAGACCTCCAAGCCCCAGTGGGTCACGGATCT
GCTTAATTCAGGCATCCCTCGCGAGGTGCACAAATTCTCCAAGTTTATCC
ACGGGTGCGCCGTCCTGCTCCCCGAGGAGGTCCAGGCGATGCCGTACTGG
ATCGATGACCCCTCCCTTCGCGAGTCGATCGCCGCCTCGGGGTCGGAGGA
GATCTTGGAGCCGGACGAGAACGGAGGGGAAGGAGGGAAAGGGGCGGGCG
GGACCGCCTCCATGTTCTCGCACATGTTGCCGCATGGGAAAGAAGGGAAA
GCGGCCAAGCTGGCGGAGGCGGCGAAGCGAAAGCCAGCCCCGACCCCGCG
ACGGGACAGCCAGACCCCCCTGCCTTCCCGCGCGCCCCCATCCAAGGGCC
AGGCGTGGGCCACCCCTCTCCTGTCTTCCAAGGAAGAGGAGTACTACGAG
GAGGACGAGGAGGAGGGACCGGGGTGCCTGGAGAGCACCTGTGGGGCCTG
CTTCTCGTGGACGCTCCCCCCCGAGATGAACGCCCGCATGGCGCAGCAAA
AGGTGGAGCCCAAGCTCTTCTTTGCCAACGAGCGCACCTTCATCCACTGG
CTGAACATGGCCGTGACCATCTCCTCCCTGGGGGCTGCGGTCCTGGCCTT
CTCCCCCGAGGACACCCTGAGTGAACTTTACGGGGTCATCCTTATGCCCG
TGTCCCTCCTCTTCGCCATGTACGCCCTCCAAACCTACATCAGCCGCGGC
TCCAAGATCCGCCTGCGAGAGCCGACACGTTGGGATGACCCCATGGGCCC
GATTTTGCTGGGAACCGTCTTCACGGTGGCGCTCACGGCCCAGTTCTTTT
TGAAACTGGCGCACGTGATGAAGCAGAACGGGGGGGCGTGAGCTGAGACC
GAGGCCTACGGGCGGACAGGGCTCTGGATCCCGTCATGGGAGGACTGAGG
GTAGACGGCTTAGAGGCAGCAAGGTCTTTTTGGGGGCAGTGGCAGGGTAG
GATTGCGGAGGTAGGGTGAGGTAGAGGGTTCTGAGATCGACAGTGATGGT
GTCCCCTGGCCGTGCAGGAGGGAGGGACGAAGGGGGGGCAAGGTCTGATG
GAGTGGGAACGAACAAGTTAAAACTGAACGGTAGTATGGAGAGGCAAACG
GGAATATGGCGTTGGGTCAGAAGCTGGTGGTCGGTGGGATGAGCGTCGGA
ACGGTTAGCCCTTCATACCAGCGTGCTCGAGAGGGATCTTCGATAGAGGG
ACATGGAGGGGGGAGGTATTTCGGCGGGAGTAATCAGGTTAACGGACAAA
TTTCATATTCATGTCTTATCC

protein sequence of rna5340

>rna5340-protein ID=rna5340-protein|Name=rna5340|organism=Nannochloropsis gaditana|type=polypeptide|length=258bp
MSPARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIR
SSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYL
AVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTT
MMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGE
GREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQGRGGGGEEEWEED
WVSDDDRE

mRNA from alignment at CM002465.1:757357..758515+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5340 ID=rna5340|Name=rna5340|organism=Nannochloropsis gaditana|type=mRNA|length=1159bp|location=Sequence derived from alignment at CM002465.1:757357..758515+ (Nannochloropsis gaditana)
ATTGATATCACACCAGACTTTTATCATCACAGTGACATCACATCACACGG
ATGTCTCATCACAAGCATGTCACTCTGCACTGACACCGATCACATTTACT
CGTGGACCATAATATCGTCTCAGACCTCTGGGCGCATTGGACTTCGCGTT
GGGTGACATTTTCGTTCACTCATCCTCACccccacgtcttcttcccgcag
ATTATCGCAAATATAGCTCCTATGCTTTCTCCACAGTGCACCATCACTTC
GCAGTAAAGCAATAGCGGTAGCATGTCACCAGCTCGTCAAGACTCGCGAT
CACCAGGGACACCGACGCCCTCCACACGTCGTTCGCGATGGTACGCATTT
GCGTGTGCCGTGGCGTATGAACTTCGTCCCTTTACACCGCCCACGGCGCA
CGATCTGCTCCACTACATCCGGTCTAGCAGACAAGTTGGGAGAGATATTT
GTGAGGAAGCACTTCAATTTTCGAAGAATGTTGCGTGGCCCCTGCTTTGC
CGCGTGCTTgggatcctcctctcctggcGCTACGCCATCCCTCTGACCGC
TTTCGCCGCTGCTTTTTACTTGGCCGTTACTGCGGAATTCGGGCTCGTGT
TTTTGATCCTCTCATCCCTTGTTTTGATATGGACGGTGGGCCTGGGTGAT
GACGCAACCACCAACAATCAGGCCGGGGAGCGGCTCAGTCCCTGGAGCGT
TTTCAATCGAGGGATGACCACCATGATGGGGACCATCAATCCCGAGCAAT
TCGACGCAGAACTACGCCACTAtcgggtggagggagagggctctCATGGC
TCGGAAGAGAGAAGGCCAGAAATGGGAACTCAggagccgggaggaggaga
tggagcgggaagagacggggagggtagggagggggccgatggaggggcag
gccgcccgggagagggcgggcgctCGCGGAAGAGTGGGAAAAAGGCGCGC
AGAAGCTTTGATAGAGACAAGCggcgagggcaagggagagggggaggggg
ggaggaggagtgggaggaggactgggTATCTGACGACGATAGAGAGTGAG
CATGCGGGCTGTACATGTAGGCATGATGATTTAGCATGTAAATTAAAGGA
GCAGAGGAACCCGGGTCAGCTTCAAACGAGAACATCTATGCTGCACTTGC
GCTCATTTC

Coding sequence (CDS) from alignment at CM002465.1:757357..758515+

>rna5340 ID=rna5340|Name=rna5340|organism=Nannochloropsis gaditana|type=CDS|length=777bp|location=Sequence derived from alignment at CM002465.1:757357..758515+ (Nannochloropsis gaditana)
ATGTCACCAGCTCGTCAAGACTCGCGATCACCAGGGACACCGACGCCCTC
CACACGTCGTTCGCGATGGTACGCATTTGCGTGTGCCGTGGCGTATGAAC
TTCGTCCCTTTACACCGCCCACGGCGCACGATCTGCTCCACTACATCCGG
TCTAGCAGACAAGTTGGGAGAGATATTTGTGAGGAAGCACTTCAATTTTC
GAAGAATGTTGCGTGGCCCCTGCTTTGCCGCGTGCTTgggatcctcctct
cctggcGCTACGCCATCCCTCTGACCGCTTTCGCCGCTGCTTTTTACTTG
GCCGTTACTGCGGAATTCGGGCTCGTGTTTTTGATCCTCTCATCCCTTGT
TTTGATATGGACGGTGGGCCTGGGTGATGACGCAACCACCAACAATCAGG
CCGGGGAGCGGCTCAGTCCCTGGAGCGTTTTCAATCGAGGGATGACCACC
ATGATGGGGACCATCAATCCCGAGCAATTCGACGCAGAACTACGCCACTA
tcgggtggagggagagggctctCATGGCTCGGAAGAGAGAAGGCCAGAAA
TGGGAACTCAggagccgggaggaggagatggagcgggaagagacggggag
ggtagggagggggccgatggaggggcaggccgcccgggagagggcgggcg
ctCGCGGAAGAGTGGGAAAAAGGCGCGCAGAAGCTTTGATAGAGACAAGC
ggcgagggcaagggagagggggagggggggaggaggagtgggaggaggac
tgggTATCTGACGACGATAGAGAGTGA

Synonyms

Publications