EWM25444.1, cds5327 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|585107205|gb|EWM25444.1| (putative domain SAYSvFN [Nannochloropsis gaditana]) HSP 1 Score: 524.242 bits (1349), Expect = 0.000e+0 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query: 1 MSPARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQGRGGGGEEEWEEDWVSDDDRE 258
MSPARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQGRGGGGEEEWEEDWVSDDDRE
Sbjct: 1 MSPARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQGRGGGGEEEWEEDWVSDDDRE 258
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|298710558|emb|CBJ25622.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 72.7886 bits (177), Expect = 1.635e-11 Identity = 51/178 (28.65%), Postives = 86/178 (48.31%), Query Frame = 0
Query: 15 TPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLC----RVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQE 188
T RR +W++ A+A+EL+PF+ P+ D+ + R R + +E ++ + + R LG LL+W L +A +L EFG V+ I+SS+ +I+ + LG+ + S +SVFN G ++GTIN EQF+ E+ V H + + Q+
Sbjct: 8 TAVGRREKWWSVVKAIAFELKPFSLPSVEDVKAAAVAVRTNVRQVVDELVRVTPEAVGAVKAVNPLRALG-LLAW-----LCGWALFIWL----EFGAVYFIISSMAMIF-MNLGERGES------EWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPAHHHGDGNEDDNNNQD 168
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|953502156|emb|CEG36647.1| (Uncharacterized conserved protein [Plasmopara halstedii]) HSP 1 Score: 64.6994 bits (156), Expect = 4.890e-9 Identity = 56/202 (27.72%), Postives = 93/202 (46.04%), Query Frame = 0
Query: 34 LRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTA-------EFGLVFLILSSLVLI-WTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGR---EGADGGAGRPGEGGRSRKSGKK 224
L PF PP R +R DI +A Q + L VL + WR+ + L++FA ++ EF + ++I+S L+ + + +G + T++ +S +SVFNRG MMG+++ EQF+ ELRH ++ E + + RR E Q+ D A D + A E R+R++ +K
Sbjct: 18 LVPFIPPA-------FRVNRDTRADIRRKAAQLTSRET--LKSFVLALRPHWRF-LTLSSFAVVIWIKGLVYIHKHEPEFAVAYIIVSGFFLLAYHLFIGGEVRTDD-----ISAYSVFNRGAQRMMGSLSAEQFENELRHRQLPHEDA-STSNRRSE-AAQKHDYCDEANNDDDQELMVALAHSLQEMKREARRARRTSRK 202
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|470451617|ref|XP_004340524.1| (hypothetical protein ACA1_045070 [Acanthamoeba castellanii str. Neff] >gi|440797400|gb|ELR18487.1| hypothetical protein ACA1_045070 [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 61.6178 bits (148), Expect = 6.701e-8 Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 0
Query: 85 WRYAIP-----LTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMG 185
WRY P L +A + EFGLVF I S +W + A T+ GER+S +SVFNRG++ + GT+N +FD +R G G EE+RP +G
Sbjct: 31 WRYVRPTTLAKLVVWAILQVIFYRLEFGLVFFIASCFYWVWD-SMSSSAATD---GERVSAYSVFNRGVSALPGTLNANEFDNMMRGGFAPPPG--GEEEKRPAVG 130
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|198421432|ref|XP_002130031.1| (PREDICTED: SAYSvFN domain-containing protein 1-like [Ciona intestinalis]) HSP 1 Score: 58.151 bits (139), Expect = 4.436e-7 Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0
Query: 87 YAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRH 166
+ + L + F L V EFG+VF ILS+ V I+ + +TN + LS +SVFN+ + GT EQF+ ELRH
Sbjct: 72 FVLKLVLWLILFGLFVELEFGMVFCILSAFVFIYF-----NTSTNRRRSNELSAYSVFNKNCERLDGTFTAEQFERELRH 146 The following BLAST results are available for this feature:
BLAST of EWM25444.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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