EWM25444.1, cds5327 (CDS) Nannochloropsis gaditana

Overview
NameEWM25444.1
Unique Namecds5327
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:757629..758405 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25444.1
Productputative domain SAYSvFN
Orig transcript idgnl|cribi|Naga_100005g140.6738.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:757629..758405 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR019387Uncharacterised_SAYSvFN
Homology
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|585107205|gb|EWM25444.1| (putative domain SAYSvFN [Nannochloropsis gaditana])

HSP 1 Score: 524.242 bits (1349), Expect = 0.000e+0
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query:    1 MSPARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQGRGGGGEEEWEEDWVSDDDRE 258
            MSPARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQGRGGGGEEEWEEDWVSDDDRE
Sbjct:    1 MSPARQDSRSPGTPTPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGREGADGGAGRPGEGGRSRKSGKKARRSFDRDKRRGQGRGGGGEEEWEEDWVSDDDRE 258          
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|298710558|emb|CBJ25622.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.7886 bits (177), Expect = 1.635e-11
Identity = 51/178 (28.65%), Postives = 86/178 (48.31%), Query Frame = 0
Query:   15 TPSTRRSRWYAFACAVAYELRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLC----RVLGILLSWRYAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQE 188
            T   RR +W++   A+A+EL+PF+ P+  D+     + R   R + +E ++ +      +      R LG LL+W     L  +A   +L    EFG V+ I+SS+ +I+ + LG+   +        S +SVFN G   ++GTIN EQF+ E+    V     H  +    +   Q+
Sbjct:    8 TAVGRREKWWSVVKAIAFELKPFSLPSVEDVKAAAVAVRTNVRQVVDELVRVTPEAVGAVKAVNPLRALG-LLAW-----LCGWALFIWL----EFGAVYFIISSMAMIF-MNLGERGES------EWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPAHHHGDGNEDDNNNQD 168          
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|953502156|emb|CEG36647.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 64.6994 bits (156), Expect = 4.890e-9
Identity = 56/202 (27.72%), Postives = 93/202 (46.04%), Query Frame = 0
Query:   34 LRPFTPPTAHDLLHYIRSSRQVGRDICEEALQFSKNVAWPLLCRVLGILLSWRYAIPLTAFAAAFYLAVTA-------EFGLVFLILSSLVLI-WTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMGTQEPGGGDGAGRDGEGR---EGADGGAGRPGEGGRSRKSGKK 224
            L PF PP         R +R    DI  +A Q +      L   VL +   WR+ + L++FA   ++           EF + ++I+S   L+ + + +G +  T++     +S +SVFNRG   MMG+++ EQF+ ELRH ++  E +  +  RR E   Q+    D A  D +       A        E  R+R++ +K
Sbjct:   18 LVPFIPPA-------FRVNRDTRADIRRKAAQLTSRET--LKSFVLALRPHWRF-LTLSSFAVVIWIKGLVYIHKHEPEFAVAYIIVSGFFLLAYHLFIGGEVRTDD-----ISAYSVFNRGAQRMMGSLSAEQFENELRHRQLPHEDA-STSNRRSE-AAQKHDYCDEANNDDDQELMVALAHSLQEMKREARRARRTSRK 202          
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|470451617|ref|XP_004340524.1| (hypothetical protein ACA1_045070 [Acanthamoeba castellanii str. Neff] >gi|440797400|gb|ELR18487.1| hypothetical protein ACA1_045070 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 61.6178 bits (148), Expect = 6.701e-8
Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 0
Query:   85 WRYAIP-----LTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRHYRVEGEGSHGSEERRPEMG 185
            WRY  P     L  +A    +    EFGLVF I S    +W   +   A T+   GER+S +SVFNRG++ + GT+N  +FD  +R       G  G EE+RP +G
Sbjct:   31 WRYVRPTTLAKLVVWAILQVIFYRLEFGLVFFIASCFYWVWD-SMSSSAATD---GERVSAYSVFNRGVSALPGTLNANEFDNMMRGGFAPPPG--GEEEKRPAVG 130          
BLAST of EWM25444.1 vs. NCBI_GenBank
Match: gi|198421432|ref|XP_002130031.1| (PREDICTED: SAYSvFN domain-containing protein 1-like [Ciona intestinalis])

HSP 1 Score: 58.151 bits (139), Expect = 4.436e-7
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0
Query:   87 YAIPLTAFAAAFYLAVTAEFGLVFLILSSLVLIWTVGLGDDATTNNQAGERLSPWSVFNRGMTTMMGTINPEQFDAELRH 166
            + + L  +   F L V  EFG+VF ILS+ V I+      + +TN +    LS +SVFN+    + GT   EQF+ ELRH
Sbjct:   72 FVLKLVLWLILFGLFVELEFGMVFCILSAFVFIYF-----NTSTNRRRSNELSAYSVFNKNCERLDGTFTAEQFERELRH 146          
The following BLAST results are available for this feature:
BLAST of EWM25444.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585107205|gb|EWM25444.1|0.000e+0100.00putative domain SAYSvFN [Nannochloropsis gaditana][more]
gi|298710558|emb|CBJ25622.1|1.635e-1128.65conserved unknown protein [Ectocarpus siliculosus][more]
gi|953502156|emb|CEG36647.1|4.890e-927.72Uncharacterized conserved protein [Plasmopara hals... [more]
gi|470451617|ref|XP_004340524.1|6.701e-837.74hypothetical protein ACA1_045070 [Acanthamoeba cas... [more]
gi|198421432|ref|XP_002130031.1|4.436e-738.75PREDICTED: SAYSvFN domain-containing protein 1-lik... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5340rna5340Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications