rna534, rna534 (mRNA) Nannochloropsis gaditana

Overview
Namerna534
Unique Namerna534
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length396
Alignment locationCM002455.1:1338861..1339795 -

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Properties
Property NameValue
Productalpha-soluble nsf attachment protein
Orig transcript idgnl|cribi|Naga_100746g1.8490.mrna
Orig protein idgnl|cribi|Naga_100746g1.8490
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1338861..1339795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100746g1gene516Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna534rna534-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30136.1cds534Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna534 ID=rna534|Name=rna534|organism=Nannochloropsis gaditana|type=mRNA|length=396bp
GTTTTGCGTCCTGTCTTAGGAGGATTGGCACGGCAAAAAATCGCTTGGAC
CGGCCCTCTACTCTCTGTCCGCTTACCTGGCGGGCTCCTTTCCTCACTCA
CTCCCTCCCTCCCTCACTCCCTCCCTCCTTTCCACTCTTGTCCCACAGGA
GGAGACAATTTCTACGATGCGGGCTCCTGTATCGACGGTCGGCTGACGTC
GGCCTGGAATTGGTGCTCGCAGTTGTCCTCCAAGCCCTTTTATCCGATAT
TTAAACTCACGGGATTCGCGTCCTTCGACTCGGGGGTGGGGCCCGGGGGG
TAAGGAAGCGGGGGAGGCAGGGAGGGCGGGCGATAGGGGCAAGGTAATAG
GTCGAGAGGCTGCGTGTCGTGCGAATGAAAAAAAAACGAAGTGGCA
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protein sequence of rna534

>rna534-protein ID=rna534-protein|Name=rna534|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
MASQRDRGKAHMEEADKALKRFALFSSSQKYEDASEAYTKAGNCFKVAKA
WAEGGGAFTKASELHVKLGSTYDAANAAQEAANCYKNVNPEDAISSLRQA
AAFLTELGKFKQIGRIHKDIAEIYEKEGSYDEAVENYPRVCGPVCGELRA
CR
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mRNA from alignment at CM002455.1:1338861..1339795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna534 ID=rna534|Name=rna534|organism=Nannochloropsis gaditana|type=mRNA|length=935bp|location=Sequence derived from alignment at CM002455.1:1338861..1339795- (Nannochloropsis gaditana)
ATGGCCAGCCAGCGAGATCGGGGGAAGGCGCACATGGAGGAGGCGGACAA
GGTACCCCTCCTTGCATGTAAAGCCAGCTTTCTTGTACTAAGACCCGACC
AAACCATCAATCCTTTTTACGACGCACGCACACAGGCTCTCAAACGGTTT
GCCCTTTTCAGCTCGAGCCAGAAATATGAAGACGCCTCGGAGGCATACAC
GAAAGCAGGAAACTGCTTTAAGGTCGCTAAGGCATGGGCGGAGGGTGGCG
GGGCGTTCACGAAAGCTAGTGAATTGCACGTGAAGCTCGGTAGCACGTAC
GACGCTGCTAACGCAGCACAAGAAGCAGGTAAGATGGAGGAAAAATCACG
GTAGATAGGGGAGAGGAAGTATTCCGTATTATTATTAGCTTTTCGTTGAA
TTTGGGGGTTAGTACTCAGCTCGAGGTATCCATTTGTTTTCCTCTCGCAG
CCAACTGTTACAAGAACGTCAATCCAGAGGATGCAATTAGCTCGTTGCGG
CAGGCAGCGGCTTTTTTGACGGAGCTGGGTAAATTCAAGCAGATAGGGAG
GATTCATAAGGACATAGCCGAAATCTACGAGAAGGAAGGGAGCTATGACG
AAGGTATGTTAGGACGGCTTGTAGGACCGCGGAGGGGAAAAGTTCTTGTC
AAATGCCTTTCTTGACGCTCTTGATCGGCTCTCATCCGAGATAGAGCCCT
GCCCTGCCTTCCTCCCTCCCCCTCCTCCCTCCTCCCCATACCCCTTCCCC
TCAAATGCTTTCCTCTCCCTCCCCTCCATCTCAGCCGTGGAAAATTATGT
GCAAGCCGCAGACTACTTCAGCAGCGAGAACAGCAAAAGCAGCGCCAATG
ACGCTTTGCAAAAGACTGCTTTCCTGCTTACTACCAGCCGAGGGTCTGCG
GACCCGTCTGTGGAGAACTACGCGCGTGCCGCTAA
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Coding sequence (CDS) from alignment at CM002455.1:1338861..1339795-

>rna534 ID=rna534|Name=rna534|organism=Nannochloropsis gaditana|type=CDS|length=2295bp|location=Sequence derived from alignment at CM002455.1:1338861..1339795- (Nannochloropsis gaditana)
CCGAGGGTCTGCGGACCCGTCTGTGGAGAACTACGCGCGTGCCGCTAACC
GTGGAAAATTATCCAACTGTTACAAGAACGTCAATCCAGAGGATGCAATT
AGCTCGTTGCGGCAGGCAGCGGCTTTTTTGACGGAGCTGGGTAAATTCAA
GCAGATAGGGAGGATTCATAAGGACATAGCCGAAATCTACGAGAAGGAAG
GGAGCTATGACGAAGGCTCTCAAACGGTTTGCCCTTTTCAGCTCGAGCCA
GAAATATGAAGACGCCTCGGAGGCATACACGAAAGCAGGAAACTGCTTTA
AGGTCGCTAAGGCATGGGCGGAGGGTGGCGGGGCGTTCACGAAAGCTAGT
GAATTGCACGTGAAGCTCGGTAGCACGTACGACGCTGCTAACGCAGCACA
AGAAGCAGATGGCCAGCCAGCGAGATCGGGGGAAGGCGCACATGGAGGAG
GCGGACAAGCCGAGGGTCTGCGGACCCGTCTGTGGAGAACTACGCGCGTG
CCGCTAACCGTGGAAAATTATCCAACTGTTACAAGAACGTCAATCCAGAG
GATGCAATTAGCTCGTTGCGGCAGGCAGCGGCTTTTTTGACGGAGCTGGG
TAAATTCAAGCAGATAGGGAGGATTCATAAGGACATAGCCGAAATCTACG
AGAAGGAAGGGAGCTATGACGAAGGCTCTCAAACGGTTTGCCCTTTTCAG
CTCGAGCCAGAAATATGAAGACGCCTCGGAGGCATACACGAAAGCAGGAA
ACTGCTTTAAGGTCGCTAAGGCATGGGCGGAGGGTGGCGGGGCGTTCACG
AAAGCTAGTGAATTGCACGTGAAGCTCGGTAGCACGTACGACGCTGCTAA
CGCAGCACAAGAAGCAGATGGCCAGCCAGCGAGATCGGGGGAAGGCGCAC
ATGGAGGAGGCGGACAAGCCGAGGGTCTGCGGACCCGTCTGTGGAGAACT
ACGCGCGTGCCGCTAACCGTGGAAAATTATCCAACTGTTACAAGAACGTC
AATCCAGAGGATGCAATTAGCTCGTTGCGGCAGGCAGCGGCTTTTTTGAC
GGAGCTGGGTAAATTCAAGCAGATAGGGAGGATTCATAAGGACATAGCCG
AAATCTACGAGAAGGAAGGGAGCTATGACGAAGGCTCTCAAACGGTTTGC
CCTTTTCAGCTCGAGCCAGAAATATGAAGACGCCTCGGAGGCATACACGA
AAGCAGGAAACTGCTTTAAGGTCGCTAAGGCATGGGCGGAGGGTGGCGGG
GCGTTCACGAAAGCTAGTGAATTGCACGTGAAGCTCGGTAGCACGTACGA
CGCTGCTAACGCAGCACAAGAAGCAGATGGCCAGCCAGCGAGATCGGGGG
AAGGCGCACATGGAGGAGGCGGACAAGCCGAGGGTCTGCGGACCCGTCTG
TGGAGAACTACGCGCGTGCCGCTAACCGTGGAAAATTATCCAACTGTTAC
AAGAACGTCAATCCAGAGGATGCAATTAGCTCGTTGCGGCAGGCAGCGGC
TTTTTTGACGGAGCTGGGTAAATTCAAGCAGATAGGGAGGATTCATAAGG
ACATAGCCGAAATCTACGAGAAGGAAGGGAGCTATGACGAAGGCTCTCAA
ACGGTTTGCCCTTTTCAGCTCGAGCCAGAAATATGAAGACGCCTCGGAGG
CATACACGAAAGCAGGAAACTGCTTTAAGGTCGCTAAGGCATGGGCGGAG
GGTGGCGGGGCGTTCACGAAAGCTAGTGAATTGCACGTGAAGCTCGGTAG
CACGTACGACGCTGCTAACGCAGCACAAGAAGCAGATGGCCAGCCAGCGA
GATCGGGGGAAGGCGCACATGGAGGAGGCGGACAAGCCGAGGGTCTGCGG
ACCCGTCTGTGGAGAACTACGCGCGTGCCGCTAACCGTGGAAAATTATCC
AACTGTTACAAGAACGTCAATCCAGAGGATGCAATTAGCTCGTTGCGGCA
GGCAGCGGCTTTTTTGACGGAGCTGGGTAAATTCAAGCAGATAGGGAGGA
TTCATAAGGACATAGCCGAAATCTACGAGAAGGAAGGGAGCTATGACGAA
GGCTCTCAAACGGTTTGCCCTTTTCAGCTCGAGCCAGAAATATGAAGACG
CCTCGGAGGCATACACGAAAGCAGGAAACTGCTTTAAGGTCGCTAAGGCA
TGGGCGGAGGGTGGCGGGGCGTTCACGAAAGCTAGTGAATTGCACGTGAA
GCTCGGTAGCACGTACGACGCTGCTAACGCAGCACAAGAAGCAGATGGCC
AGCCAGCGAGATCGGGGGAAGGCGCACATGGAGGAGGCGGACAAG
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Synonyms
Publications