rna5336, rna5336 (mRNA) Nannochloropsis gaditana

Overview
Namerna5336
Unique Namerna5336
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1383
Alignment locationCM002465.1:746152..747801 +

Link to JBrowse

Properties
Property NameValue
Productgtp-binding protein
Orig transcript idgnl|cribi|Naga_100005g135.6679.mrna
Orig protein idgnl|cribi|Naga_100005g135.6679
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:746152..747801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g135gene5157Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5336rna5336-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25385.1cds5323Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5336 ID=rna5336|Name=rna5336|organism=Nannochloropsis gaditana|type=mRNA|length=1383bp
GAAGGCAGCAACGATGCGGGCAGCTTGATCATACGACATTTTCCACAAAG
AGTCCACATTCGAAACCCACGTGCGTCCCTGTAAAACAATTCGAATAACG
ATGTGGGTACAGTGATAGTGTGAAACGTAATCGGGAGACCAAAAGGAAGA
CATGGTCAACGCATCTTACCAAGTTACCACCAGGGGTCTCCCATGGCGGT
AGTTCATCAGGCTTTCTGTTCACGGCCAATTGTCTAGCACTCTTTCCCGA
AGTACTTTCCACGCATCGTGACACACCTCGGACCTCGAAGCATTACGTGG
GATCTTTTATGATGTTTTATTCCATGCAGTCTTCCGCCTCGCGTTGTGTG
CTGGTCATTGCACTGGCGTCGAGCAGAGAGACCGGTTTGGACACATGTCA
AGTTACATGCTTCCGTGATTCTATGACCGACCGTCCACACGAACACATGT
ACACAGCGCACCCGTAGCAACCACACATGTCGATACGTCGCTTCTCGACA
TTTTTCGTCGTAATTTGGGTACTGATCCTTGCTGCGATCACCCAGGGCTT
TTTTCTCGCTCCTTGTACCAGGAGCGCGACTACACTGATGCAGGCTCAAG
CGAGTAAACAAAGCCAAAACCGAGTTGATGGCGGTAAACTCGACAGGTTG
GCGGCTTTACAACAGGGAGCGTTCCTATCTTCAGCATTTCTATTCCTGAC
GGCTTCGCTTTCCTCGCCTGCGCAAGCGAAAAATAGTGCCCCTGCAGCCT
CTTTTGAAGAATGTATTTCCCGGCTCCTGCTGAGCAGGAAAGTTCTCGAG
CCCGTTCAAAAGTACATCAAAATTGGCCAATATGACCCTGCTCGTACCAA
CATCAAATACGTCACGAATCAATTTCGCCTGAAGAAAGCCATGGAGCGCG
TTGTACTGCTGGCCTTCGAGAAGGACCTTCCCCAGAGCAAGCTTGATGAT
GCGGCGGAGGTGACTGCTGTGATCGACAACACTCTGTCACAATTAGATTC
AAGCGTCTACACACAGATCTTCATACCCACGGATGGGGAAATAAGCCCAG
ATGCCCTAAAATACCAGAAACAGGCATTTGAGTTCTACGATACGACATTG
GACTCAATCGACAAAGTCCTATCCCTAGCCAGCCCTGAGGACCTTAAAGA
AGCCCAAAAACTGGTAGATGGCACAAGCCTCCCCCCCTTCCTCTTCAAAT
CCTTCGCGGATGGGCAGACGTTCCGGCCGCCTACTCCCTAGACTGGTATC
GTGCAAAGGAGCAGGCTCGGCGGAGCAGCTCTTACCGGTGATGCAAATGA
CACATGATCTACTTTGCCAAGGGAAACAAAGCGAAAGAAAACCAGAAAAA
AATGAATTAGGCAATATCCGGGTAGTGTTCTGC
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protein sequence of rna5336

>rna5336-protein ID=rna5336-protein|Name=rna5336|organism=Nannochloropsis gaditana|type=polypeptide|length=499bp
MWTLCGKCRMIKLPASLLPSTFMFAAASIEPAQLWSWQRATKPILGDNFH
RNYSIRPQKVPSAPVPNCIVLHITPPRSTLEDRLQEEDFLDEACALAQTL
GYAVPVREILRLRAIHPKTFIGKGKVVELRGLLRATDAILFINTPRLTAL
QQRNLKELCQTEGVKDRISVILDIFGQRARTMEAKLQVELAQCKYALSHL
VRGASAGYEQQRGASGTGFMAGGGEKALELRRRQLREQSKVLQHKLKTVE
KRRMEQRKHRRQPTVSLLGYTNVGKSSLLNALTHSHAVSVEDRPFETLDT
TTRALFLPSVGASALLTDTVGFIRQLPLELVAAFRATLEEAVSADLLLHV
RDASTLGTPLFAEQYASVDKILRDVGTPEHLKHSVVEVWNKVDLLTNKQR
DQMARVLAGAKREASSPDVVLVSAQTKEGMRELVRMIGDRLVEGGFLQPA
ETRGADKKSSCEKDGKKHMCYSDEEGKQEVLSSRTENMSNKKAVNEVDV
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mRNA from alignment at CM002465.1:746152..747801+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5336 ID=rna5336|Name=rna5336|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp|location=Sequence derived from alignment at CM002465.1:746152..747801+ (Nannochloropsis gaditana)
CCTGGTGGTAACTTGGTAAGATGCGTTGACCATGTCTTCCTTTTGGTCTC
CCGATTACGTTTCACACTATCACTGTACCCACATCGTTATTCGAATTGTT
TTACAGGGACGCACGTGGGTTTCGAATGTGGACTCTTTGTGGAAAATGTC
GTATGATCAAGCTGCCCGCATCGTTGCTGCCTTCAACTTTCATGTTCGCC
GCAGCTTCCATAGAACCCGCACAACTATGGTCGTGGCAAAGGGCCACAAA
GCCCATTTTGGGCGACAATTTTCACAGAAACTACTCTATCCGCCCCCAAA
AAGTGCCATCCGCGCCGGTCCCCAACTGTATAGTCCTCCACATAACACCT
CCACGCTCTACCCTCGAAGACCGGTTACAAGAAGAGGActtcctggacga
ggcctgcGCCTTGGCTCAGACCCTGGGGTATGCGGTGCCTGTACGTGAGA
TACTGCGGCTCCGGGCGATCCACCCCAAGACCTTTATTGGCAAAGGAAAG
GTGGTGGAACTCAGGGGGTTGTTGCGTGCCACGGATGCGATTCTCTTCAT
AAACACGCCCCGACTGACGGCATTACAACAAAGGAACCTGAAAGAATTAT
GTCAAACAGAGGGCGTCAAAGATAGAATCAGCGTTATTTTGGACATTTTT
GGCCAACGTGCCCGGACAATGGAAGCTAAACTGCAGGTGGAGCTCGCGCA
GTGCAAATACGCCCTTTCTCATTTGGTGCGGGGGGCCTCTGCCGGATATG
AGCAGCAACGTGGGGCGTCAGGGACAGGGTTCAtggccggcggaggagaa
aaggcgctAGAGCTCCGCCGCAGACAGCTTCGAGAGCAAAGCAAAGTGCT
GCAGCACAAGCTCAAAACGGTGGAGAAGCGGCGGATGGAGCAGCGGAAGC
ACCGGCGACAGCCGACTGTCAGTTTGCTGGGGTACACGAACGTGGGAAAA
TCCTCTCTCTTGAATGCACTCACGCACTCACATGCCGTCTCTGTGGAAGA
TCGGCCCTTTGAGACCCTCGACACCACCACAcgggccctcttcctcccct
ccgtggGCGCCTCTGCTCTCCTCACTGACACCGTCGGCTTCATCCGTCAG
CTGCCCCTTGAGCTCGTCGCCGCCTTTCGCGccaccctggaggaggcggt
atCTGCTGACCTTTTACTGCATGTGCGGGACGCTAGCACCCTTGGCACGC
CCCTGTTTGCCGAGCAGTACGCCTCAGTGGACAAGATCTTGAGGGACGTG
GGGACTCCGGAGCATTTGAAGCACTCCGTGGTGGAAGTCTGGAACAAGGT
AGACCTCCTGACGAATAAGCAACGGGACCAGATGGCCCGCGTCCTTGCAG
GAGCGAAGCGGGAGGCATCCAGCCCCGACGTGGTCCTGGTCTCGGCCCAg
acaaaggaaggaatgagggagcTGGTGCGGATGATTGGTGACAGattggt
ggagggcggcttCTTGCAGCCGGCGGAGACGAGGGGTGCAGATAAAAAGT
CTAGCTGTGAGAAGGATGGCAAGAAACACATGTGCTAcagcgatgaggag
gggaaacaaGAGGTATTGTCATCGCGAACAGAGAATATGTCAAATAAAAA
GGCTGTAAATGAAGTAGATGTATAAAGTAATGTATCCAAAGATGTTACGA
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Coding sequence (CDS) from alignment at CM002465.1:746152..747801+

>rna5336 ID=rna5336|Name=rna5336|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at CM002465.1:746152..747801+ (Nannochloropsis gaditana)
ATGTGGACTCTTTGTGGAAAATGTCGTATGATCAAGCTGCCCGCATCGTT
GCTGCCTTCAACTTTCATGTTCGCCGCAGCTTCCATAGAACCCGCACAAC
TATGGTCGTGGCAAAGGGCCACAAAGCCCATTTTGGGCGACAATTTTCAC
AGAAACTACTCTATCCGCCCCCAAAAAGTGCCATCCGCGCCGGTCCCCAA
CTGTATAGTCCTCCACATAACACCTCCACGCTCTACCCTCGAAGACCGGT
TACAAGAAGAGGActtcctggacgaggcctgcGCCTTGGCTCAGACCCTG
GGGTATGCGGTGCCTGTACGTGAGATACTGCGGCTCCGGGCGATCCACCC
CAAGACCTTTATTGGCAAAGGAAAGGTGGTGGAACTCAGGGGGTTGTTGC
GTGCCACGGATGCGATTCTCTTCATAAACACGCCCCGACTGACGGCATTA
CAACAAAGGAACCTGAAAGAATTATGTCAAACAGAGGGCGTCAAAGATAG
AATCAGCGTTATTTTGGACATTTTTGGCCAACGTGCCCGGACAATGGAAG
CTAAACTGCAGGTGGAGCTCGCGCAGTGCAAATACGCCCTTTCTCATTTG
GTGCGGGGGGCCTCTGCCGGATATGAGCAGCAACGTGGGGCGTCAGGGAC
AGGGTTCAtggccggcggaggagaaaaggcgctAGAGCTCCGCCGCAGAC
AGCTTCGAGAGCAAAGCAAAGTGCTGCAGCACAAGCTCAAAACGGTGGAG
AAGCGGCGGATGGAGCAGCGGAAGCACCGGCGACAGCCGACTGTCAGTTT
GCTGGGGTACACGAACGTGGGAAAATCCTCTCTCTTGAATGCACTCACGC
ACTCACATGCCGTCTCTGTGGAAGATCGGCCCTTTGAGACCCTCGACACC
ACCACAcgggccctcttcctcccctccgtggGCGCCTCTGCTCTCCTCAC
TGACACCGTCGGCTTCATCCGTCAGCTGCCCCTTGAGCTCGTCGCCGCCT
TTCGCGccaccctggaggaggcggtatCTGCTGACCTTTTACTGCATGTG
CGGGACGCTAGCACCCTTGGCACGCCCCTGTTTGCCGAGCAGTACGCCTC
AGTGGACAAGATCTTGAGGGACGTGGGGACTCCGGAGCATTTGAAGCACT
CCGTGGTGGAAGTCTGGAACAAGGTAGACCTCCTGACGAATAAGCAACGG
GACCAGATGGCCCGCGTCCTTGCAGGAGCGAAGCGGGAGGCATCCAGCCC
CGACGTGGTCCTGGTCTCGGCCCAgacaaaggaaggaatgagggagcTGG
TGCGGATGATTGGTGACAGattggtggagggcggcttCTTGCAGCCGGCG
GAGACGAGGGGTGCAGATAAAAAGTCTAGCTGTGAGAAGGATGGCAAGAA
ACACATGTGCTAcagcgatgaggaggggaaacaaGAGGTATTGTCATCGC
GAACAGAGAATATGTCAAATAAAAAGGCTGTAAATGAAGTAGATGTATAA
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Synonyms
Publications