rna5335, rna5335 (mRNA) Nannochloropsis gaditana

Overview
Namerna5335
Unique Namerna5335
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1497
Alignment locationCM002465.1:744672..746335 -

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Properties
Property NameValue
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100005g134.6677.mrna
Orig protein idgnl|cribi|Naga_100005g134.6677
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:744672..746335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g134gene5156Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5335rna5335-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25383.1cds5322Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5335 ID=rna5335|Name=rna5335|organism=Nannochloropsis gaditana|type=mRNA|length=1497bp
AATACCTCTCTACAATCATTATTAGGCACCAAGCGGAAGTGATGGGCGTC
AGAAAATGGATTCTATTTGATGACAAGGGTGCAGAGGCTCTGCGGCAATA
CAAATACGTGGGAGTGGACAACTCGTTAACGTACAAATATGCCCTGTCTC
CCCTCGCGGAGTACGTAGTGCAGACATGTATTCCACGTTGGATGGCACCG
AATCTTATTACCCTCCTAGGCCTGCTCTTCCCTCTGATCTCCCTCTGCAT
ATTTGCTTGCTATTCGCCGCATTTCCGCACGGAGCCACCCGCGTGGACAT
TCTTTTTTAACGCATTTGCCTTGTTCGCGTACCAAACATTGGACAACATG
GACGGAAAGCAGGCTCGGCGGACGCAATCCTCGAACGCCTTGGGCATGGT
CTTCGACCACGGGTGCGACGCGATCAATGCAGGTATTGGAGCCATCAACC
TTCTGGTCGTGCTCGGCCTCATGTCCTCAGGGATGTGGGAACCATTTTTG
GTCCTATCCGCAGTGGCGACGCCTTTTCTTCCGTTTTACGTGGCCACCTG
GGAGGAGTACTACGTAGGGGCCCTGATTCTCCCAGTGGTTAACGGCCCCG
CTGAGGGAGTGCTCCTGGGTGTCATGTTTTCCCTCATCTCCGGGCTTTGC
GGCTCGGCCTGGTGGGGCAAAGAGCACGCATCCCTTCTGGCCTTGGATTG
GCTCCCTGTGACGCGCCCCGGAGAGGCGGTGGGTTGGTTCAGTCTGGTCA
GTATCGTCCTGACCTGCCTGTGTCAGATCGGCAACGTCCTGCTCCTGCAG
CACCGAAAGGGTCGGAGCATCGTCCAGCCCCTGCTCGACCTCCTCCCCTT
CGCGGCCCTGGCCGGCGGGGCCTCCCTCCTCATTGCCACGGAGCACGAGC
TCCTGATCGAGGCCCCTCTCTTGACCTTGGGCACCATCGCGGCCATCTTC
GTCGAACAGGTCGTCTCCCTCATGCTCGCCCACATGACCCACTCCCTCTA
CGTCCCTTACCACCGCACGCTCCTCCCCGCCTTCCTCCTCTTCGTCGCCC
TGGTCTCCCTGGAATCCTGGGAGGCATTGAAGGGGCGGGCCTTGTCGGCG
GAGCGGCTCTGGACACTTTGGCACGCGCATTTCCTCGTCGTCTTTGCCTA
TACAGCCTTGTACCTGGTCCTGATCGTGGCAGAGCTCAGCCGGGTTCTGG
AGGTGAGGCCTTTCAGGATCAAGGACAGGGGGGGCGCCCCTGAGGGAAAG
GCGACAGCCGTGAATGGAAGGATGAAAATGCAATAACAGGCGCTGGAAGT
CTGGAAAGTGGATGATCGGAGAGGGAACATCTAAAGGAAAGCTTGTATTC
GAAATGTTAACAAATGTGGTGTCATGGCTTTTATGTGGCTTGCCTGCGGC
TCAAGTCTCTGAAAGCATTTGCCGGGCGCCTTATGAGCTTTGTTTGGGTC
AAGAACTCTTGAAAGCAAAGGAATTTGAAAAGCAATTGTCTATCTGC
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protein sequence of rna5335

>rna5335-protein ID=rna5335-protein|Name=rna5335|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MSIRRFSTFFVVIWVLILAAITQGFFLAPCTRSATTLMQAQASKQSQNRV
DGGKLDRLAALQQGAFLSSAFLFLTASLSSPAQAKNSAPAASFEECISRL
LLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFEKD
LPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQA
FEFYDTTLDSIDKVLSLASPEDLKEAQKLVDGTSLPPFLFKSFADGQTFR
PPTP
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mRNA from alignment at CM002465.1:744672..746335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5335 ID=rna5335|Name=rna5335|organism=Nannochloropsis gaditana|type=mRNA|length=1664bp|location=Sequence derived from alignment at CM002465.1:744672..746335- (Nannochloropsis gaditana)
GAAGGCAGCAACGATGCGGGCAGCTTGATCATACGACATTTTCCACAAAG
AGTCCACATTCGAAACCCACGTGCGTCCCTGTAAAACAATTCGAATAACG
ATGTGGGTACAGTGATAGTGTGAAACGTAATCGGGAGACCAAAAGGAAGA
CATGGTCAACGCATCTTACCAAGTTACCACCAGGGGTCTCCCATGGCGGT
AGTTCATCAGGCTTTCTGTTCACGGCCAATTGTCTAGCACTCTTTCCCGA
AGTACTTTCCACGCATCGTGACACACCTCGGACCTCGAAGCATTACGTGG
GATCTTTTATGATGTTTTATTCCATGCAGTCTTCCGCCTCGCGTTGTGTG
CTGGTCATTGCACTGGCGTCGAGCAGAGAGACCGGTTTGGACACATGTCA
AGTTACATGCTTCCGTGATTCTATGACCGACCGTCCACACGAACACATGT
ACACAGCGCACCCGTAGCAACCACACATGTCGATACGTCGCTTCTCGACA
TTTTTCGTCGTAATTTGGGTACTGATCCTTGCTGCGATCACCCAGGGCTT
TTTTCTCGCTCCTTGTACCAGGAGCGCGACTACACTGATGCAGGCTCAAG
CGAGTAAACAAAGCCAAAACCGAGTTGATGGCGGTAAACTCGACAGGTTG
GCGGCTTTACAACAGGGAGCGTTCCTATCTTCAGCATTTCTATTCCTGAC
GGCTTCGCTTTCCTCGCCTGCGCAAGCGAAAAATAGTGCCCCTGCAGCCT
CTTTTGAAGAATGTATTTCCCGGCTCCTGCTGAGCAGGAAAGTTCTCGAG
CCCGTTCAAAAGTACATCAAAATTGGCCAATATGACCCTGCTCGTACCAA
CATCAAATACGTCACGAATCAATTTCGCCTGAAGAAAGCCATGGAGCGCG
TTGTACTGCTGGCCTTCGAGAAGGACCTTCCCCAGAGCAAGCTTGATGAT
GCGGCGGAGGTGCGTCCAGCACGGATGACAAAACAAAACCAATGAAGAGC
TTATCTGCAACCTGATGTCTCGTACTGTTGCATCATTTATGAAACGAAGG
CTCACATAGTCACTGATCACATTCTTATCTTTTCTTCCCTATGACGATTG
CGTATCCTGTGCGATCTCGCAGGTGACTGCTGTGATCGACAACACTCTGT
CACAATTAGATTCAAGCGTCTACACACAGATCTTCATACCCACGGATGGG
GAAATAAGCCCAGATGCCCTAAAATACCAGAAACAGGTGAGTAGATATGG
CTTGTGATGCGTTTCAAGCCGATTCCGTGAGGATTTTGGTGAAAAAGAAG
GTTGCAAGCAAGCTCACATCCCATTAAACAATGAATCAATCTCATTTTGG
GCAGGCATTTGAGTTCTACGATACGACATTGGACTCAATCGACAAAGTCC
TATCCCTAGCCAGCCCTGAGGACCTTAAAGAAGCCCAAAAACTGGTAGAT
GGCACAAGCCTCCCCCCCTTCCTCTTCAAATCCTTCGCGGATGGGCAGAC
GTTCCGGCCGCCTACTCCCTAGACTGGTATCGTGCAAAGGAGCAGGCTCG
GCGGAGCAGCTCTTACCGGTGATGCAAATGACACATGATCTACTTTGCCA
AGGGAAACAAAGCGAAAGAAAACCAGAAAAAAATGAATTAGGCAATATCC
GGGTAGTGTTCTGC
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Coding sequence (CDS) from alignment at CM002465.1:744672..746335-

>rna5335 ID=rna5335|Name=rna5335|organism=Nannochloropsis gaditana|type=CDS|length=2295bp|location=Sequence derived from alignment at CM002465.1:744672..746335- (Nannochloropsis gaditana)
GCATTTGAGTTCTACGATACGACATTGGACTCAATCGACAAAGTCCTATC
CCTAGCCAGCCCTGAGGACCTTAAAGAAGCCCAAAAACTGGTAGATGGCA
CAAGCCTCCCCCCCTTCCTCTTCAAATCCTTCGCGGATGGGCAGACGTTC
CGGCCGCCTACTCCCTAGGTGACTGCTGTGATCGACAACACTCTGTCACA
ATTAGATTCAAGCGTCTACACACAGATCTTCATACCCACGGATGGGGAAA
TAAGCCCAGATGCCCTAAAATACCAGAAACAGATGTCGATACGTCGCTTC
TCGACATTTTTCGTCGTAATTTGGGTACTGATCCTTGCTGCGATCACCCA
GGGCTTTTTTCTCGCTCCTTGTACCAGGAGCGCGACTACACTGATGCAGG
CTCAAGCGAGTAAACAAAGCCAAAACCGAGTTGATGGCGGTAAACTCGAC
AGGTTGGCGGCTTTACAACAGGGAGCGTTCCTATCTTCAGCATTTCTATT
CCTGACGGCTTCGCTTTCCTCGCCTGCGCAAGCGAAAAATAGTGCCCCTG
CAGCCTCTTTTGAAGAATGTATTTCCCGGCTCCTGCTGAGCAGGAAAGTT
CTCGAGCCCGTTCAAAAGTACATCAAAATTGGCCAATATGACCCTGCTCG
TACCAACATCAAATACGTCACGAATCAATTTCGCCTGAAGAAAGCCATGG
AGCGCGTTGTACTGCTGGCCTTCGAGAAGGACCTTCCCCAGAGCAAGCTT
GATGATGCGGCGGAGGCATTTGAGTTCTACGATACGACATTGGACTCAAT
CGACAAAGTCCTATCCCTAGCCAGCCCTGAGGACCTTAAAGAAGCCCAAA
AACTGGTAGATGGCACAAGCCTCCCCCCCTTCCTCTTCAAATCCTTCGCG
GATGGGCAGACGTTCCGGCCGCCTACTCCCTAGGTGACTGCTGTGATCGA
CAACACTCTGTCACAATTAGATTCAAGCGTCTACACACAGATCTTCATAC
CCACGGATGGGGAAATAAGCCCAGATGCCCTAAAATACCAGAAACAGATG
TCGATACGTCGCTTCTCGACATTTTTCGTCGTAATTTGGGTACTGATCCT
TGCTGCGATCACCCAGGGCTTTTTTCTCGCTCCTTGTACCAGGAGCGCGA
CTACACTGATGCAGGCTCAAGCGAGTAAACAAAGCCAAAACCGAGTTGAT
GGCGGTAAACTCGACAGGTTGGCGGCTTTACAACAGGGAGCGTTCCTATC
TTCAGCATTTCTATTCCTGACGGCTTCGCTTTCCTCGCCTGCGCAAGCGA
AAAATAGTGCCCCTGCAGCCTCTTTTGAAGAATGTATTTCCCGGCTCCTG
CTGAGCAGGAAAGTTCTCGAGCCCGTTCAAAAGTACATCAAAATTGGCCA
ATATGACCCTGCTCGTACCAACATCAAATACGTCACGAATCAATTTCGCC
TGAAGAAAGCCATGGAGCGCGTTGTACTGCTGGCCTTCGAGAAGGACCTT
CCCCAGAGCAAGCTTGATGATGCGGCGGAGGCATTTGAGTTCTACGATAC
GACATTGGACTCAATCGACAAAGTCCTATCCCTAGCCAGCCCTGAGGACC
TTAAAGAAGCCCAAAAACTGGTAGATGGCACAAGCCTCCCCCCCTTCCTC
TTCAAATCCTTCGCGGATGGGCAGACGTTCCGGCCGCCTACTCCCTAGGT
GACTGCTGTGATCGACAACACTCTGTCACAATTAGATTCAAGCGTCTACA
CACAGATCTTCATACCCACGGATGGGGAAATAAGCCCAGATGCCCTAAAA
TACCAGAAACAGATGTCGATACGTCGCTTCTCGACATTTTTCGTCGTAAT
TTGGGTACTGATCCTTGCTGCGATCACCCAGGGCTTTTTTCTCGCTCCTT
GTACCAGGAGCGCGACTACACTGATGCAGGCTCAAGCGAGTAAACAAAGC
CAAAACCGAGTTGATGGCGGTAAACTCGACAGGTTGGCGGCTTTACAACA
GGGAGCGTTCCTATCTTCAGCATTTCTATTCCTGACGGCTTCGCTTTCCT
CGCCTGCGCAAGCGAAAAATAGTGCCCCTGCAGCCTCTTTTGAAGAATGT
ATTTCCCGGCTCCTGCTGAGCAGGAAAGTTCTCGAGCCCGTTCAAAAGTA
CATCAAAATTGGCCAATATGACCCTGCTCGTACCAACATCAAATACGTCA
CGAATCAATTTCGCCTGAAGAAAGCCATGGAGCGCGTTGTACTGCTGGCC
TTCGAGAAGGACCTTCCCCAGAGCAAGCTTGATGATGCGGCGGAG
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Synonyms
Publications