EWM25383.1, cds5322 (CDS) Nannochloropsis gaditana

Overview
NameEWM25383.1
Unique Namecds5322
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:745377..745859 -
Alignment locationCM002465.1:745100..745213 -
Alignment locationCM002465.1:744814..744981 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25383.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100005g134.6677.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:745377..745859 -
CM002465.1supercontigCM002465.1:745100..745213 -
CM002465.1supercontigCM002465.1:744814..744981 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25383.1 vs. NCBI_GenBank
Match: gi|585107144|gb|EWM25383.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MSIRRFSTFFVVIWVLILAAITQGFFLAPCTRSATTLMQAQASKQSQNRVDGGKLDRLAALQQGAFLSSAFLFLTASLSSPAQAKNSAPAASFEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFEKDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFEFYDTTLDSIDKVLSLASPEDLKEAQKLVDGTSLPPFLFKSFADGQTFRPPTP 254
            MSIRRFSTFFVVIWVLILAAITQGFFLAPCTRSATTLMQAQASKQSQNRVDGGKLDRLAALQQGAFLSSAFLFLTASLSSPAQAKNSAPAASFEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFEKDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFEFYDTTLDSIDKVLSLASPEDLKEAQKLVDGTSLPPFLFKSFADGQTFRPPTP
Sbjct:    1 MSIRRFSTFFVVIWVLILAAITQGFFLAPCTRSATTLMQAQASKQSQNRVDGGKLDRLAALQQGAFLSSAFLFLTASLSSPAQAKNSAPAASFEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFEKDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFEFYDTTLDSIDKVLSLASPEDLKEAQKLVDGTSLPPFLFKSFADGQTFRPPTP 254          
BLAST of EWM25383.1 vs. NCBI_GenBank
Match: gi|545706601|ref|XP_005705617.1| (hypothetical protein Gasu_34880 [Galdieria sulphuraria] >gi|452822074|gb|EME29097.1| hypothetical protein Gasu_34880 [Galdieria sulphuraria])

HSP 1 Score: 99.3673 bits (246), Expect = 1.384e-21
Identity = 62/167 (37.13%), Postives = 87/167 (52.10%), Query Frame = 0
Query:   62 QQGAFLSSAFLFLTASLSSPAQAKNSAPAASFEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFEKDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIPTDGE-ISPDALKYQKQAFEFYDTTLDSIDKVLSLASPEDLKEAQ 227
             Q  +L+   L      +SP  A N    A  E  +  ++  R++L+PV+ Y+  G +D ART++ Y T   RLK  M+ V  L  E  L     D A E T  IDN +SQLD+S YT  FIP+D   ++    KYQ QA +FY   +  +D  L L+  E+LK AQ
Sbjct:   71 HQRGYLALVTLIGVYCFASPVFAYN----ADMESALVPIIQCRQLLDPVEGYLNNGNWDKARTSVNYCTRVLRLKTNMKTVTNLLSEDTLK----DKAIEYTVDIDNAMSQLDASAYTPNFIPSDARGVTDQNQKYQMQAKDFYHKVIQELDAFLDLSPGEELKNAQ 229          
BLAST of EWM25383.1 vs. NCBI_GenBank
Match: gi|298706673|emb|CBJ29602.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 101.679 bits (252), Expect = 7.224e-21
Identity = 68/171 (39.77%), Postives = 94/171 (54.97%), Query Frame = 0
Query:   80 SPAQAKNSAPAA-SFEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFE----KDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIP--TDGEISPDALKYQKQAFEFYDTTLDSIDKVLSLASPEDLKEAQKLVDG--TSLPPFLFK 241
            SPA +K +  AA S EE  + +++ ++V +P  +Y+K  Q+D ARTN  Y+T  F LKK ++  ++ A +     D  +   D A EV A+  N     DSSVYT IFIP   DG + P A KY KQA+ FYD     +D  + L  PE    A+KL+      LP FLFK
Sbjct:   90 SPALSKRAEAAAQSLEELEADIMICKEVFKPTLQYLKAEQFDAARTNTNYITRFFNLKKKIDSFIVQASDVVEDPDTMEKAFDMAQEVEALFTN----FDSSVYTIIFIPADADGVLPPGAEKYLKQAYGFYDDINKVLDFYIDLVPPETKAAAEKLLPAKRAPLPSFLFK 256          
BLAST of EWM25383.1 vs. NCBI_GenBank
Match: gi|873226894|emb|CEM20016.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 87.4261 bits (215), Expect = 2.136e-17
Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = 0
Query:   79 SSPAQAKNSAPAASFEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFEKDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIF-IPTDGEISPDALKYQKQAFEFYDTTLDSIDKVLSLASPEDLKEAQKLVDGTSLPPFL 239
              PA   +S+   +  E I+ + + R+ ++PV+ YI  GQ+D AR+N+ Y T   RL   +++V       D+ +    +  E+   + NT+S LDSS+YT IF   T         KYQK+ + +YD ++  +D+ + L   E L E+ +L D   LP FL
Sbjct:   39 GGPAWG-DSSGLGNTTEAIATVFVCRRAMDPVKGYIAEGQWDRARSNVNYCTRVLRLNSVLKKV-----SNDIDEV---EGLEIAGDLLNTMSDLDSSIYTPIFAFDTASGTQRSFAKYQKECYRYYDESVALLDRFIQLLPSELLAESSQLADARPLPKFL 191          
BLAST of EWM25383.1 vs. NCBI_GenBank
Match: gi|544210019|ref|XP_005535411.1| (hypothetical protein CYME_CMD034C [Cyanidioschyzon merolae strain 10D] >gi|449015723|dbj|BAM79125.1| hypothetical protein CYME_CMD034C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 85.5001 bits (210), Expect = 2.450e-16
Identity = 59/184 (32.07%), Postives = 95/184 (51.63%), Query Frame = 0
Query:   49 RVDGGKLDRLAALQQGAFLSSAFLFLTAS---LSSPAQAKNSAPAAS------FEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVV--LLAFEKDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFEFYDTTLDSIDKVLSLASPE 221
            R+ G  L   AA Q  + LS A   L AS   L+ P   + S   A+       +  +  +++ R++LEP+ +Y++ G +D AR+N+ Y T   RL  A+  V   LL  E DL   K + A  V++ + N ++QLD+++YT IF+ +D  +SP   KY  +A  + +     +D  LSL   E
Sbjct:   36 RLSGEGLGSGAARQAFSGLSRALAGLLASVWLLADPTVTQRSLAFAANPYDLGTDRGVQAVMVCRELLEPIPRYVESGSWDKARSNVNYCTRTLRLHTALRAVTDRLLTPEYDL--EKHESAMRVSSDLPNVMTQLDATLYTPIFMASDQGVSPAQRKYGDEALGYLEQAKQMLDHYLSLLPSE 217          
BLAST of EWM25383.1 vs. NCBI_GenBank
Match: gi|1189381435|gb|OSX69233.1| (hypothetical protein BU14_1714s0002 [Porphyra umbilicalis])

HSP 1 Score: 81.6481 bits (200), Expect = 5.683e-15
Identity = 51/146 (34.93%), Postives = 77/146 (52.74%), Query Frame = 0
Query:   92 SFEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFEKDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIPTD-GEISPDALKYQKQAFEFYDTTLDSIDKVLSLASPEDLKEAQKLVDGTSLP 236
            S +E ++ L+  R  L P++ Y+K G++D ARTN+ Y T   RL   + R    A   D       DA +V + + N  +QLD+S YT  FIP D GEI  +A KY +Q   F D     +D++L+LA   +++  +      SLP
Sbjct:   89 SLDEPLTSLVQCRAALPPIRGYLKAGKWDKARTNVNYCTRVLRLSTNI-RTYATALGGD----AYYDALDVLSDVMNLTTQLDASAYTAGFIPADEGEIPLEAKKYMEQGLAFLDEVEGLMDQLLALAG-SNVERVKPAAKAMSLP 228          
The following BLAST results are available for this feature:
BLAST of EWM25383.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585107144|gb|EWM25383.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|545706601|ref|XP_005705617.1|1.384e-2137.13hypothetical protein Gasu_34880 [Galdieria sulphur... [more]
gi|298706673|emb|CBJ29602.1|7.224e-2139.77conserved unknown protein [Ectocarpus siliculosus][more]
gi|873226894|emb|CEM20016.1|2.136e-1732.10unnamed protein product [Vitrella brassicaformis C... [more]
gi|544210019|ref|XP_005535411.1|2.450e-1632.07hypothetical protein CYME_CMD034C [Cyanidioschyzon... [more]
gi|1189381435|gb|OSX69233.1|5.683e-1534.93hypothetical protein BU14_1714s0002 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5335rna5335Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications