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Properties
| Property Name | Value |
|---|
| Product | sporulation protein rmd1 |
| Orig transcript id | gnl|cribi|Naga_100005g130.6675.mrna |
| Orig protein id | gnl|cribi|Naga_100005g130.6675 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:734703..737117 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5331 ID=rna5331|Name=rna5331|organism=Nannochloropsis gaditana|type=mRNA|length=1695bp
ATGTCGCTGCGCTTCTACGCTTTGGATTCGCCTGAACTTCGGTCCATGGA
ACAACATGGGCACTTCCTAATGCTGGGCACGAAAGTTGCTTTGGATTTAT
GCTGCCCGAACCTGGCTTTCTACGTAAACCGTGCCGTTAAGGTCTCCTCC
CTGGACGCCACAGGCTCTGACCCCTCCGCGCCTCTGCTTAGTGCCATGGC
GAACGATTTGACCCCTACCTTTGACAGGCACTTTTGTTCGGACACCTGGG
TAGATGTAGACGGCACTCTTGTCAGGGTGACCCTCGGTTGTCTTCCTTCT
GGCGAGGCGTCACGGCATAACTGCCCAGCCAAACCGCACGCTGCAACCGA
GATTGTCAAGAGCGTTGCGAACGGTGAGGGGCCTCTCCGAATCCTCCTGG
CACTGACCACAGCCGACCACGCGGTCGCCTTGGGTACGGCAGTAGCGCGG
GCATTTCCCATGTACAGTCGCAAGAGCAACGGCAGCAGCAGCGCCAGCAA
GCCACCGCGAAACGTCGAGGTAGTCTTCAATATGACCATGGAGGCCTTGG
CCTCCTGTACTTTTTTAGGAGGTCAGGGTGTGAATTTCTCCAGCGATAGC
GGTAGTGATGAGCCCGGGAAGCAAGGGGAACACCAGGTGTTCGATGCGTC
CATGACAATGGTGAGCCGAGTAGAGGCAATGGCGGCGGGGATCCGACTGA
GCGCGCGCCTGGTCGACGCGCCTGCCAACGAGATGCACACGGACGCGATG
GTCGAAGAAGCGAGACAGGTTCTGCACCGGCTTCGACGGCTGAATTTGCA
AGACTCCGTTTCCATGACCGTGCTGCGGGGGGAGGAGCTGAGGGAGAAGG
GCTTTGGAGGACTGTACGGAGTGGGGAAGGCGGCCGAGCACCCGCCCGCC
CTGGTGGTCCTGTCGCTAGTGCCCCGGGCCAATGAGCGCCCGGCCAGCAC
GCCCGACACGCTGAAGCCTAGTGTCGTGTGGGTGGGAAAAGGCATCGTCT
ACGACACGGGTGGGCTGAGCATCAAGACCAAGACGGGCATGCCTGGGATG
AAGCGCGACATGGGGGGGGCCGCCGCGATCTTGGCCGCATTTGAGGTGGC
GGCGCGGCTCGGGTACCGCAAGAGACCGCTCCACGCCATCCTGTGCCTGG
CGGAGAACTCCGTGGCGGCGAAGGCCACGCGCCCGGACGACATCCATGAG
ATGTATTCGGGCAAGACGGTAGAGATCAACAACACGGACGCGGAGGGGCG
CCTGGTCTTGGGAGACGGTGTAGCGTACGCGGTGCAACACTTAGCTCCCT
CCGTGCTCGTGGATATGGCCACCCTGACGGGCGCGCAAGGCGTGGCGACG
GGGCTTCGGCACGCCGCCTTGTACTGCAACGACGAGAGGCTGGAGGCGGC
CGCTGTGGAGGTCGGCAGAGCCACGGGGGACCTCACCCATCCTGTCCCCT
ATGCCCCCGAGTTTTTCCAGCATGAGTTCCGCTCCTCGGTTGCGGACATG
AAAAACAGCGTGGCGAACCGTGAGAACGCCCAGTGCTCGTGCGCCGGCCA
GTTCATTGGGGCGCAGATCTCGGAGTGGCTGGGCGGAAAGGGGCATGGGT
GGATCCACGTCGACATGGCGTACCCTGTGCACAATGGAGAGAGGGCCACG
GGTTACGGCGTGAATTTGCTGGTCGGTCTGTTGGAACGCCTGTGA back to topprotein sequence of rna5331 >rna5331-protein ID=rna5331-protein|Name=rna5331|organism=Nannochloropsis gaditana|type=polypeptide|length=569bp
MSSSPPVHYGATASLPYSDYNHEDDYLSVDAEEGRRRRDEEETTPTAPSS
STSSLMRQYQTSGYHSDSAIPTQSHMTPNRRRRTSSREMLDPAAEPLIGT
DIDESDRERDGRHHHLHSPSMNHGRESYEDGNGFAVQSMLDFDQFRSPLE
EWVQPRKPRWNRKVTRKKTKKPTIAVRKGRLAVYCIASELQTDQIQRYLL
QRKKEMVPVDKGGHKGKGAGGDGGGGGYYGTNGGKAGSQHSYFAPPAPPT
LSTTNSSSLLLPVPKKKEGGRGSHIAARCKSFLRATANAAVSGVKAAPPS
QSAKVDTSDLVGLNWRDKNFMGVIYTTDDDGKCDPLEVKHIFCFPYGCTV
FWGCTKEEEERFISMLTPFAVELVSDMEREESYDDFAYFYGSSPQILHYE
ITLTSNDPEEKLALSFSLAQSAKLFVFEDRVDGTITSTKHIPIHLAEFGK
TNVSRKEISKLTGKVFLERNEINLHSDILDTPEWFWEADLWEPRYVGLCK
YLDLPNRVNILNKRLDILRELLNVLETQLDNSHSTKLELIVIALIIVEVV
LQVLEIALNDLLHLNRNAF back to topmRNA from alignment at CM002465.1:734703..737117- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5331 ID=rna5331|Name=rna5331|organism=Nannochloropsis gaditana|type=mRNA|length=2415bp|location=Sequence derived from alignment at CM002465.1:734703..737117- (Nannochloropsis gaditana)
TGAGGTGCACCGTCACACTCGGACAAACATGCGTACGACAAGGATCTTAC
CGCATCGTGCTCGCGGACAGTGAGGCCTAACTCGCTTCTGGGAGGCACCT
TACGTATGCCGCCCTCCTCGGTCGGTATCACCCGGAGGGGTCAAGGCAAC
GTCCTATTGCCGTACCTTCTCGTCTCACGTTTGTCTTCGCTATCCTTTTC
ACCCAGGAATCTGACGACATAAGGCGTGCACGTGTGCCTGCTCGGAAGCG
AAAGCGGCTGGCAGGTTGCATAAAGCTTTGCTGCGTCCGTCAAAACGACG
CGCTCTCTTTCTCATCACAAACCGGCGCCCGCTACAATAGAGATGTCTTC
CTCACCGCCTGTCCATTACGGTGCCACCGCTTCCTTGCCGTATTCAGATT
ATAATCATGAGGACGATTATCTGAGCGTGGATGCGGAGGAAGGGCGTCGG
CGTCGGGACGAGGAGGAAACTACTCCCACAGCCCCGTCTTCCTCTACCTC
AAGTCTCATGCGACAGTACCAGACGTCTGGCTACCATTCCGATAGCGCGA
TCCCCACGCAATCGCACATGACTCCTAACCGTCGACGGAGGACGAGTTCG
CGGGAGATGCTGGACCCCGCGGCCGAGCCCTTGATAGGGACGGACATCGA
CGAGAGCGATCGCGAGAGGGACGGCCGCCATCACCACCTGCATTCGCCCT
CGATGAACCACGGGAGGGAAAGCTACGAGGACGGCAATGGGTTCGCCGTA
CAATCAATGCTGGACTTTGACCAATTCAGGTCCCCGTTGGAAGAGTGGGT
TCAGCCGCGGAAGCCTCGCTGGAACCGGAAAGTGACGCGAAAAAAGACGA
AAAAGCCCACGATCGCCGTGCGAAAAGGCCGGCTGGCCGTGTACTGTATT
GCCTCAGAGCTGCAGACGGATCAAATCCAGCGCTACTTGTTGCAGCGCAA
GAAGGAGATGGTTCCTGTCGACAAGGGAGGACACAAGGGGAAGGGAGCAG
GAGGAGACGGAGGAGGCGGAGGGTATTACGGCACGAATGGAGGCAAAGCC
GGAAGCCAACACTCGTATTTCGCACCGCCTGCTCCGCCCACGCTCTCAAC
CACAAACTCGAGCAGTTTGCTCTTACCAGTGCCCAAGAAGAAGGAGGGCG
GCAGGGGCAGCCACATCGCCGCGCGCTGCAAGAGCTTCCTGCGCGCAACG
GCCAATGCAGCGGTGAGTGGGGTCAAAGCAGCCCCTCCGTCCCAGTCGGC
AAAGGTGGATACATCGGATCTAGTCGGTTTGAATTGGCGGGACAAGAATT
TCATGGGCGTCATCTACACCACCGATGATGACGGGAAGTGCGACCCGCTG
GAGGTGAAGCACATCTTCTGTTTTCCCTACGGCTGCACTGTGTTTTGGGG
CTGCACGAAGGAGGAGGAGGAGCGTTTCATCAGCATGCTGACGCCCTTCG
CGGTGGAGCTGGTCTCGGATATGGAGCGGGAGGAGAGCTACGACGATTTC
GCCTACTTCTACGGGAGCTCGCCGCAAATCCTCCACTACGAGATCACGCT
CACAAGCAACGACCCGGAGGAAAAGCTGGCCCTCTCTTTTTCGCTGGCCC
AGTCAGCAAAGCTCTTTGTCTTCGAGGACCGCGTGGATGGGACCATCACC
AGCACCAAGCACATCCCCATCCACCTGGCGGAGTTCGGCAAGACCAACGT
GAGTCGTAAGGAGATTAGCAAGCTCACGGGGAAGGTCTTCCTGGAACGGA
ACGAGATCAACCTGCACTCGGACATCCTGGACACGCCGGAATGGTTTTGG
GAGGCCGACCTGTGGGAGCCCCGATACGTGGGCCTGTGCAAGTACCTGGA
CCTGCCCAACCGCGTCAATATCCTGAACAAGCGGCTTGACATCTTGCGGG
AGCTTCTGAACGTGCTCGAGACGCAGTTAGACAACTCTCATTCCACGAAG
GTCAGCGTGAGGGCGAGGACGTGGGGACGGGAGGGGGAGGGGGGGTATGG
TATTTGATGTCATGTTCAGTCCCACCTACACTCACTTCTGCCCGCTCTTC
TTCCCTCCCTCCTTTCCAACCGTCTATGCCCGTTAACAGCTCGAATTGAT
CGTGATTGCGCTGATTATTGTGGAGGTGGTTCTCCAGGTGCTGGAGATCG
CCCTCAATGACCTCTTGCATTTGAATAGGAATGCGTTCTAGGCGAAGAAA
CAGACGACGAGGGGACAAAATAAGGAGGATTTGTGTCTTGCCGGGGAAAG
CGCTAGGGAAGGAGGGAATGCCTGCTTCTGTGGGCCGTCTCTCTTCCCAT
GAAATGCGTGGTGACATTTTGCGGCAACAGAATATGACTGGACGATGAAA
ACCATGGGAAAGACAGCAAGAGTGCACGTCAAAGCAGAAGATATGCGCCG
GAGGGATTTTCTTTG back to topCoding sequence (CDS) from alignment at CM002465.1:734703..737117- >rna5331 ID=rna5331|Name=rna5331|organism=Nannochloropsis gaditana|type=CDS|length=3420bp|location=Sequence derived from alignment at CM002465.1:734703..737117- (Nannochloropsis gaditana)
CTCGAATTGATCGTGATTGCGCTGATTATTGTGGAGGTGGTTCTCCAGGT
GCTGGAGATCGCCCTCAATGACCTCTTGCATTTGAATAGGAATGCGTTCT
AGATGTCTTCCTCACCGCCTGTCCATTACGGTGCCACCGCTTCCTTGCCG
TATTCAGATTATAATCATGAGGACGATTATCTGAGCGTGGATGCGGAGGA
AGGGCGTCGGCGTCGGGACGAGGAGGAAACTACTCCCACAGCCCCGTCTT
CCTCTACCTCAAGTCTCATGCGACAGTACCAGACGTCTGGCTACCATTCC
GATAGCGCGATCCCCACGCAATCGCACATGACTCCTAACCGTCGACGGAG
GACGAGTTCGCGGGAGATGCTGGACCCCGCGGCCGAGCCCTTGATAGGGA
CGGACATCGACGAGAGCGATCGCGAGAGGGACGGCCGCCATCACCACCTG
CATTCGCCCTCGATGAACCACGGGAGGGAAAGCTACGAGGACGGCAATGG
GTTCGCCGTACAATCAATGCTGGACTTTGACCAATTCAGGTCCCCGTTGG
AAGAGTGGGTTCAGCCGCGGAAGCCTCGCTGGAACCGGAAAGTGACGCGA
AAAAAGACGAAAAAGCCCACGATCGCCGTGCGAAAAGGCCGGCTGGCCGT
GTACTGTATTGCCTCAGAGCTGCAGACGGATCAAATCCAGCGCTACTTGT
TGCAGCGCAAGAAGGAGATGGTTCCTGTCGACAAGGGAGGACACAAGGGG
AAGGGAGCAGGAGGAGACGGAGGAGGCGGAGGGTATTACGGCACGAATGG
AGGCAAAGCCGGAAGCCAACACTCGTATTTCGCACCGCCTGCTCCGCCCA
CGCTCTCAACCACAAACTCGAGCAGTTTGCTCTTACCAGTGCCCAAGAAG
AAGGAGGGCGGCAGGGGCAGCCACATCGCCGCGCGCTGCAAGAGCTTCCT
GCGCGCAACGGCCAATGCAGCGGTGAGTGGGGTCAAAGCAGCCCCTCCGT
CCCAGTCGGCAAAGGTGGATACATCGGATCTAGTCGGTTTGAATTGGCGG
GACAAGAATTTCATGGGCGTCATCTACACCACCGATGATGACGGGAAGTG
CGACCCGCTGGAGGTGAAGCACATCTTCTGTTTTCCCTACGGCTGCACTG
TGTTTTGGGGCTGCACGAAGGAGGAGGAGGAGCGTTTCATCAGCATGCTG
ACGCCCTTCGCGGTGGAGCTGGTCTCGGATATGGAGCGGGAGGAGAGCTA
CGACGATTTCGCCTACTTCTACGGGAGCTCGCCGCAAATCCTCCACTACG
AGATCACGCTCACAAGCAACGACCCGGAGGAAAAGCTGGCCCTCTCTTTT
TCGCTGGCCCAGTCAGCAAAGCTCTTTGTCTTCGAGGACCGCGTGGATGG
GACCATCACCAGCACCAAGCACATCCCCATCCACCTGGCGGAGTTCGGCA
AGACCAACGTGAGTCGTAAGGAGATTAGCAAGCTCACGGGGAAGGTCTTC
CTGGAACGGAACGAGATCAACCTGCACTCGGACATCCTGGACACGCCGGA
ATGGTTTTGGGAGGCCGACCTGTGGGAGCCCCGATACGTGGGCCTGTGCA
AGTACCTGGACCTGCCCAACCGCGTCAATATCCTGAACAAGCGGCTTGAC
ATCTTGCGGGAGCTTCTGAACGTGCTCGAGACGCAGTTAGACAACTCTCA
TTCCACGAAGCTCGAATTGATCGTGATTGCGCTGATTATTGTGGAGGTGG
TTCTCCAGGTGCTGGAGATCGCCCTCAATGACCTCTTGCATTTGAATAGG
AATGCGTTCTAGATGTCTTCCTCACCGCCTGTCCATTACGGTGCCACCGC
TTCCTTGCCGTATTCAGATTATAATCATGAGGACGATTATCTGAGCGTGG
ATGCGGAGGAAGGGCGTCGGCGTCGGGACGAGGAGGAAACTACTCCCACA
GCCCCGTCTTCCTCTACCTCAAGTCTCATGCGACAGTACCAGACGTCTGG
CTACCATTCCGATAGCGCGATCCCCACGCAATCGCACATGACTCCTAACC
GTCGACGGAGGACGAGTTCGCGGGAGATGCTGGACCCCGCGGCCGAGCCC
TTGATAGGGACGGACATCGACGAGAGCGATCGCGAGAGGGACGGCCGCCA
TCACCACCTGCATTCGCCCTCGATGAACCACGGGAGGGAAAGCTACGAGG
ACGGCAATGGGTTCGCCGTACAATCAATGCTGGACTTTGACCAATTCAGG
TCCCCGTTGGAAGAGTGGGTTCAGCCGCGGAAGCCTCGCTGGAACCGGAA
AGTGACGCGAAAAAAGACGAAAAAGCCCACGATCGCCGTGCGAAAAGGCC
GGCTGGCCGTGTACTGTATTGCCTCAGAGCTGCAGACGGATCAAATCCAG
CGCTACTTGTTGCAGCGCAAGAAGGAGATGGTTCCTGTCGACAAGGGAGG
ACACAAGGGGAAGGGAGCAGGAGGAGACGGAGGAGGCGGAGGGTATTACG
GCACGAATGGAGGCAAAGCCGGAAGCCAACACTCGTATTTCGCACCGCCT
GCTCCGCCCACGCTCTCAACCACAAACTCGAGCAGTTTGCTCTTACCAGT
GCCCAAGAAGAAGGAGGGCGGCAGGGGCAGCCACATCGCCGCGCGCTGCA
AGAGCTTCCTGCGCGCAACGGCCAATGCAGCGGTGAGTGGGGTCAAAGCA
GCCCCTCCGTCCCAGTCGGCAAAGGTGGATACATCGGATCTAGTCGGTTT
GAATTGGCGGGACAAGAATTTCATGGGCGTCATCTACACCACCGATGATG
ACGGGAAGTGCGACCCGCTGGAGGTGAAGCACATCTTCTGTTTTCCCTAC
GGCTGCACTGTGTTTTGGGGCTGCACGAAGGAGGAGGAGGAGCGTTTCAT
CAGCATGCTGACGCCCTTCGCGGTGGAGCTGGTCTCGGATATGGAGCGGG
AGGAGAGCTACGACGATTTCGCCTACTTCTACGGGAGCTCGCCGCAAATC
CTCCACTACGAGATCACGCTCACAAGCAACGACCCGGAGGAAAAGCTGGC
CCTCTCTTTTTCGCTGGCCCAGTCAGCAAAGCTCTTTGTCTTCGAGGACC
GCGTGGATGGGACCATCACCAGCACCAAGCACATCCCCATCCACCTGGCG
GAGTTCGGCAAGACCAACGTGAGTCGTAAGGAGATTAGCAAGCTCACGGG
GAAGGTCTTCCTGGAACGGAACGAGATCAACCTGCACTCGGACATCCTGG
ACACGCCGGAATGGTTTTGGGAGGCCGACCTGTGGGAGCCCCGATACGTG
GGCCTGTGCAAGTACCTGGACCTGCCCAACCGCGTCAATATCCTGAACAA
GCGGCTTGACATCTTGCGGGAGCTTCTGAACGTGCTCGAGACGCAGTTAG
ACAACTCTCATTCCACGAAG back to top
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