rna533, rna533 (mRNA) Nannochloropsis gaditana

Overview
Namerna533
Unique Namerna533
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2269
Alignment locationCM002455.1:1337315..1337710 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF2009
Orig transcript idgnl|cribi|Naga_101927g2.3581.mrna
Orig protein idgnl|cribi|Naga_101927g2.3581
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1337315..1337710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101927g2gene515Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna533rna533-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30140.1cds533Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna533 ID=rna533|Name=rna533|organism=Nannochloropsis gaditana|type=mRNA|length=2269bp
TTTGACACGCATTTATCCATCACTGTTGTTTCCGCAATTCTTGTCATTCA
GATTGAGCTGAACGCGTCTAAAACGGCCCAGCCTCCGCCTGGTTTTGACG
GTCAAGGCGAGAAGCTTGTGTCGGACCATTTCCCCTTGCCGGGGTCCACG
ACAAGACGTGCCAAAAACACCGGCGGCAACAAAGACAGGAATAAGAGTAG
GGGAAAACGCCTGCTCTGAAAAGTTGTGGAGAAGCACAAGTAACAGTCAA
TCGGACTCGGGCAGTCTCTCATCCGGAGGGGAGGTCAGCAGACCAAGCAG
AGTGGTGGTGAGAGTGCAAGCAACCCTGAGGCTCTTCCGGGACACCACAA
CATTCTCCCCTGCTGCATTGCTGCTGTCGAGGGCCTTATTCGCTCCATTC
CAGGACGGCAGAGCCAAAGAAAGGTCTTGCTGATTACGTGAATACCGGAC
GCACTCGATCCCCATCGACCCCTCACGATGGCCTCTCCCATGGACCAGGC
TGGGGGATCGAGAGATATGAATGCGGTGGTGGGGGACAGCGGGATGGAGG
CGACGGAAGAAGAAATGGGTGGGCACAACGAGCAAGAAAGGCAGGAGGGG
CATCCCGACCCCGCCGCACCTAATCCGGAGGTGGAAGATGGGAGTGGGAG
CAGCCACGAAAGCCACGGAGAGAGCAGCGGGGCAGAGGCAAGCCCATTCC
AAAGCCCCCCCTTGGAGCTCGCAACGCCGGCCTCTCTGCCCGAAGGCGTC
TGCGAGGAATGCGAGTGCGATCCGTCCCTGTGGGTGTGCGACACCTGCGA
GATGGACCTGTGTACAATGTGCTTCGACGTGTTGCACCGGAAAGGGAAAA
GAGCCCTCCATCGGAAGCGCCCCAGGGAGAGCATGGCGGTCCAGGAGACT
GCCTCCAGCAACGGCGATGGCGGCGTCACCCCCCGACCCCCCCCACCATC
CCGCACGTTCTAACCCTGACAGAGCAAGTGAGCAGTAGCAGCACCGGCAG
CTCCAACAGCAACAGCGGCGCCGGCTCGGCACCCAGCAAGAAATCCAGCA
ACTTCCCCACCTTCAACTTCTGGTCGAGCAGCCCTTCCTCTTCCAGTTCC
ACCTCGCCGCCCCTCCCGGCCCACCCTTGCCAGTTGCCCCCTCTTGGGTC
CTCCCAGTCGATGAGAGACCGCGCCAAGTCCATCCCCCTCCGCCTCTCCT
TCGAACAACGCAAGACGCTGCACCTCGTCCAGGCGACCTTGACCGCCTGC
GACTACACGGCTCGGGTGGACCGGCATTTCAAGAGCCTCCCGCACCGGGA
ACAGGCCCAGTTGAAACAGATCACGGGCGTGCTCCAAGCTTTGGTCCTGT
CGGAGGACTACGCCAAGGGCAGGGCCTTGGTGGAGGAGCAGGACTACGAG
CGCCACGCCCTCTTTTTCCAGCGATGCTTCGAAGTCGCCCGTCGGCACAA
AATCATGAACCCGGAGAAAATGCGCGGGGCGTACGGGAAACTCAGCTACC
TTCTCCAAGACGCCCTCTCCCCCGCCCTCCGTCGGCACCTGCACGTGCAC
GTGGTGGGGCGGTTGCAGACGGTCTACGCCCTCTTGGAAGAGAAGGATGG
CTTGCGGTTGCTCGACGATCCCCTCATTCACACGGCCACCCAAGAGATCC
TCCCCGACAAGCGAAAAAGCCGGGCACAAATCCAGCAAGAGATCAAACGC
AAGGAGCGAGCGATCGAGACCTTTGTGCGTGCGTACACGACGCCTTGCCT
GGAGGCTGAGGACATCCGCCTCTGTCTCTACTCCATCTGCGACAACAACT
CGTTCCTGAACTCGAACCGGCTGCCCATCGACAAAATGATCGCCTACCTC
CTCCAGTACTTCTCCTCGAGCAAGGTTGAACCAGGCTACTCGTTGTCTAT
CCTGCAGGGACAGGCAGGGGCTCGACTCACGCACTCCCACGAACGGCAAT
TCAACTTCGCGTTGCAGTCCCTCACGTTGTGGCGCGAGATCACGGACGAC
ATGTTCAGGTTCTGGTGTCTGGCGGAGGAAGACTTGCTCTCCTCCCAAGG
GCCTCCCTACACGCTCAGAGACACGGGACAAGGGCTCCATCGGGTCCAGC
ACTGCCCCCGGACCTACCACGCTATGCAGGACTTGCTCCATAAGACTCAG
CGCCGGGTGGGATCCTGGGTGGGCTCCAGCGTCATCCATCTGGGGGACCA
CAACGTGCCGAACGCCCTCATGTTCATCGACAAGTACACGCAGGTAGGGA
GGGAGGGAGGGAGGAAGGG
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protein sequence of rna533

>rna533-protein ID=rna533-protein|Name=rna533|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
VLRPVLGGLARQKIAWTGPLLSVRLPGGLLSSLTPSLPHSLPPFHSCPTG
GDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSGVGPGG
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mRNA from alignment at CM002455.1:1337315..1337710+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna533 ID=rna533|Name=rna533|organism=Nannochloropsis gaditana|type=mRNA|length=396bp|location=Sequence derived from alignment at CM002455.1:1337315..1337710+ (Nannochloropsis gaditana)
GTTTTGCGTCCTGTCTTAGGAGGATTGGCACGGCAAAAAATCGCTTGGAC
CGGCCCTCTACTCTCTGTCCGCTTACCTGGCGGGCTCCTTTCCtcactca
ctccctccctccctcactccctccctcctttccactcTTGTCCCACAGGA
GGAGACAATTTCTACGATGCGGGCTCCTGTATCGACGGTCGGCTGACGTC
GGCCTGGAATTGGTGCTCGCAGTTGTCCTCCAAGCCCTTTTATCCGATAT
TTAAACTCACGGGATTCGCGTCCTTCGACTCGGGggtggggcccgggggg
taaggaagcgggggaggcagggagggcgggcgataGGGGCAAGGTAATAG
GTCGAGAGGCTGCGTGTCGTGCGAATGAAAAAAAAACGAAGTGGCA
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Coding sequence (CDS) from alignment at CM002455.1:1337315..1337710+

>rna533 ID=rna533|Name=rna533|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at CM002455.1:1337315..1337710+ (Nannochloropsis gaditana)
GTTTTGCGTCCTGTCTTAGGAGGATTGGCACGGCAAAAAATCGCTTGGAC
CGGCCCTCTACTCTCTGTCCGCTTACCTGGCGGGCTCCTTTCCtcactca
ctccctccctccctcactccctccctcctttccactcTTGTCCCACAGGA
GGAGACAATTTCTACGATGCGGGCTCCTGTATCGACGGTCGGCTGACGTC
GGCCTGGAATTGGTGCTCGCAGTTGTCCTCCAAGCCCTTTTATCCGATAT
TTAAACTCACGGGATTCGCGTCCTTCGACTCGGGggtggggcccgggggg
taa
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Synonyms
Publications