EWM30140.1, cds533 (CDS) Nannochloropsis gaditana

Overview
NameEWM30140.1
Unique Namecds533
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1337315..1337617 +

Link to JBrowse

Properties
Property NameValue
Start range1337315
Start range.
Protein idEWM30140.1
ProductProtein of unknown function DUF2009
Partialtrue
Orig transcript idgnl|cribi|Naga_101927g2.3581.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1337315..1337617 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR018553DUF2009
Homology
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|585112795|gb|EWM30140.1| (Protein of unknown function DUF2009, partial [Nannochloropsis gaditana])

HSP 1 Score: 199.134 bits (505), Expect = 1.054e-64
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 VLRPVLGGLARQKIAWTGPLLSVRLPGGLLSSLTPSLPHSLPPFHSCPTGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSGVGPGG 100
            VLRPVLGGLARQKIAWTGPLLSVRLPGGLLSSLTPSLPHSLPPFHSCPTGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSGVGPGG
Sbjct:    1 VLRPVLGGLARQKIAWTGPLLSVRLPGGLLSSLTPSLPHSLPPFHSCPTGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSGVGPGG 100          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|219113269|ref|XP_002186218.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583068|gb|ACI65688.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 96.2857 bits (238), Expect = 2.947e-21
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFD 93
            +G +NFYDAGSCIDGRLTSAWNWCSQL +KPFYPIFKLTGF  FD
Sbjct:  430 SGANNFYDAGSCIDGRLTSAWNWCSQLPTKPFYPIFKLTGFTGFD 474          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|298710497|emb|CBJ25561.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 6.220e-21
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFD 93
            +G DNF+DAGSCIDGRLTSAWNWCSQL+SKPF+P+F+LTGF SFD
Sbjct:  533 SGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFD 577          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|1043303991|gb|OBZ88725.1| (hypothetical protein A0J61_03227 [Choanephora cucurbitarum])

HSP 1 Score: 94.3597 bits (233), Expect = 1.778e-20
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSG 95
            +G DNFYDAGSCIDGRLTSAWNWCSQ+  KP++P+F LTGFA FD G
Sbjct:  541 SGADNFYDAGSCIDGRLTSAWNWCSQIEKKPYFPVFLLTGFAGFDGG 587          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|551632999|ref|XP_005819361.1| (hypothetical protein GUITHDRAFT_148672 [Guillardia theta CCMP2712] >gi|428163303|gb|EKX32381.1| hypothetical protein GUITHDRAFT_148672 [Guillardia theta CCMP2712])

HSP 1 Score: 93.9745 bits (232), Expect = 2.422e-20
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFD 93
            +G DNFYDAGSCIDGRLTSAW+WCS +S KPFYPIFKL GF SFD
Sbjct:  610 SGADNFYDAGSCIDGRLTSAWHWCSNISEKPFYPIFKLAGFTSFD 654          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|1183479414|gb|ORZ03253.1| (hypothetical protein BCR43DRAFT_431754 [Syncephalastrum racemosum])

HSP 1 Score: 92.8189 bits (229), Expect = 6.592e-20
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSG 95
            +G DNFYDAGSCIDGRLTSAWNWCSQ+  KP++P+F LTGF  FD G
Sbjct:  477 SGADNFYDAGSCIDGRLTSAWNWCSQIEQKPYFPVFLLTGFVGFDGG 523          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|551572686|ref|XP_005772169.1| (hypothetical protein EMIHUDRAFT_75396, partial [Emiliania huxleyi CCMP1516] >gi|485623569|gb|EOD19740.1| hypothetical protein EMIHUDRAFT_75396, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 92.4337 bits (228), Expect = 6.706e-20
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSGVG 97
            +GGDNF+DAGSCIDGRLTSAWNWCSQL  KPFY +F L GF SFD  +G
Sbjct:  412 SGGDNFFDAGSCIDGRLTSAWNWCSQLPEKPFYIVFTLAGFTSFDGSLG 460          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|1069959300|ref|XP_018288316.1| (hypothetical protein PHYBLDRAFT_177969 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026585656|gb|OAD70276.1| hypothetical protein PHYBLDRAFT_177969 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 92.8189 bits (229), Expect = 6.910e-20
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSG 95
            +G DNFYDAGSCIDGRLTSAWNWCSQ+  KP++P+F LTGF  FD G
Sbjct:  515 SGADNFYDAGSCIDGRLTSAWNWCSQIEQKPYFPVFLLTGFVGFDGG 561          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|698818677|ref|XP_009842367.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574102518|gb|ETV68068.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 92.4337 bits (228), Expect = 8.922e-20
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSGVG 97
            +G DNF+DAGSCIDGRLTSAWNWCS+L +KPF+PIFKL GF  FD   G
Sbjct:  573 SGADNFFDAGSCIDGRLTSAWNWCSRLHAKPFFPIFKLAGFVGFDGKFG 621          
BLAST of EWM30140.1 vs. NCBI_GenBank
Match: gi|698818675|ref|XP_009842366.1| (hypothetical protein H257_15829 [Aphanomyces astaci] >gi|574102517|gb|ETV68067.1| hypothetical protein H257_15829 [Aphanomyces astaci])

HSP 1 Score: 92.4337 bits (228), Expect = 9.009e-20
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0
Query:   49 TGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKLTGFASFDSGVG 97
            +G DNF+DAGSCIDGRLTSAWNWCS+L +KPF+PIFKL GF  FD   G
Sbjct:  616 SGADNFFDAGSCIDGRLTSAWNWCSRLHAKPFFPIFKLAGFVGFDGKFG 664          
The following BLAST results are available for this feature:
BLAST of EWM30140.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112795|gb|EWM30140.1|1.054e-64100.00Protein of unknown function DUF2009, partial [Nann... [more]
gi|219113269|ref|XP_002186218.1|2.947e-2184.44predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298710497|emb|CBJ25561.1|6.220e-2182.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|1043303991|gb|OBZ88725.1|1.778e-2076.60hypothetical protein A0J61_03227 [Choanephora cucu... [more]
gi|551632999|ref|XP_005819361.1|2.422e-2082.22hypothetical protein GUITHDRAFT_148672 [Guillardia... [more]
gi|1183479414|gb|ORZ03253.1|6.592e-2074.47hypothetical protein BCR43DRAFT_431754 [Syncephala... [more]
gi|551572686|ref|XP_005772169.1|6.706e-2075.51hypothetical protein EMIHUDRAFT_75396, partial [Em... [more]
gi|1069959300|ref|XP_018288316.1|6.910e-2074.47hypothetical protein PHYBLDRAFT_177969 [Phycomyces... [more]
gi|698818677|ref|XP_009842367.1|8.922e-2073.47hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|698818675|ref|XP_009842366.1|9.009e-2073.47hypothetical protein H257_15829 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna533rna533Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications