rna5318, rna5318 (mRNA) Nannochloropsis gaditana

Overview
Namerna5318
Unique Namerna5318
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2293
Alignment locationCM002465.1:699182..700635 -

Link to JBrowse

Properties
Property NameValue
Productcell cycle related kinase
Orig transcript idgnl|cribi|Naga_100005g114.6728.mrna
Orig protein idgnl|cribi|Naga_100005g114.6728
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:699182..700635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g114gene5138Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25434.1cds5305Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5318rna5318-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5318 ID=rna5318|Name=rna5318|organism=Nannochloropsis gaditana|type=mRNA|length=2293bp
ATATGTCTTCTAAGTCTGACGCATATAAAAGGCGGCAAAAGAATCGACTG
TTGAGAAAATATGGAGACATATTCAAACTGCTCCTCGCGACGCTCACGTC
CGTCATGTCGGGCTCTTTTGCCTGGTCGCGGCCTGGATCCAAAAGCCTTA
GCTGCAAACAAGAGACCTCAACGTCAAAAAAAAAGCAGCGATATCAGCTT
CTGGGGGTGCTATTACCTCTCTTTTTGACCTTATCGAGGCCACTACAAAT
ACACGGCTTCCACGCTAGCCTGTTCGGACAGCGGCATTGGCGGTCCTCCC
AGAAACATATGTTGTTCCTGCTCTCAAAGTCAAATTCGATTACGCTTCTT
CATGATATCTCACAACACCGATCAAGAAAATCAATGTCTACATTTCCATT
TTCGAGCCTTCCTTCCGGCACACCACTCTTTTCCATTAATGACGAAAAAG
ATTTTCATGCTGCTTCAAGCAACTTTGAGAAGGCTTTAGAAGACGACATC
AACAAGACGAAAGAGAATCCCATCGAGCTGTTGTACTCAACTCACATGTT
AGAAGATTTTTGGGATGAATTGCCGGATGAAAAGCTCTATCTGCTGCTGG
ACAAACTAAGAATACTAGAAAAGGAGACAAGTGGAATCGGGAGCGATGTG
GGGCAGGACGCGACTTTGAAACGATTTTCTGACTACTGTCAGAATCGACA
GAGGCACATTGACATCCAGAGTACTTTGATTTCACCTGATCCAAACGGTT
TATTCGCGCAGCTCCGAGCTTCTTGGAGGAACTCAGAGTCGCATGGCGTG
GAGAACTTCCAGAGCATCGTGACGACGAGACTCAACGCTTTGCAAATGCA
AGACTTGGCCCAGATCGTACATAAGACACTTTCTTCTACATCATCGCTTT
CCCGTCAGCGCATCCCCCCCTCTCTCACCGACCTCCTCCTCGAAACCATC
ACCGCCCGTGTTCGTGCGAATTCTTCTCCTTCGTCCCCGTCCCTTCCCGG
CTCTACGTGGGTGCGCCTACTGCAAGCCTCAAGCTCTCTTTCGCCCGCGG
TGAAGGCCCGCCTCGCTGGTCAACAATTTCGGCAAGCGCTTGTTCTCGAC
CTCCCGCACCGTCTCTCCAGCCTCGCACCTGCTGATCTCGCACTCGCCGT
CCAAATTTGGCCTCGTCCTCCCGCCCACCTAGACGCGTTTAGCCGCAGGC
TTATCCAAGCAATCCTGGCGCAGAGCATCGACAGCTTGCACCGATTCAAG
CCCCTTGAGCTCGTTCAACTCCTCAGAGGGCTCCGCCGGCCTATGACGAG
GGATCGACGCACGACCATAGAGGCGCTGGATGCTGCGCGGCTGGAAACAC
CTGACGTCAACAACCGGCAGCGGCTGATCAAAGCAGCGACAAAGCAGTTA
GCCCGTCGGGTGGAGGAGCTGGGACCTGACGACTTGTCCGCATTCATGCA
AATGTGCGTCACTGACCTCACCTTTGAGGACTGGGCAAGAGACTTGGGGG
TGGCGTTCCCCAGAGCCTATACTAGAGCGGTCTTCAAGCACATCCCGGCC
ATGCGTCCTTTGCAGCTGCTGCCTGTGTTGTCAGCATTTCTATTTCTCCA
CACGGTTTTTCACTTTTCTGCAGGTACAGATTACTATCGACGATTGGAAA
ACCTGGTCCTGGCGTCGTTCGAGAAAAACGGAAGAGACGTGAACCATTCC
GATCTGGTTCTCTTCGTCCACACATTCGCCATGCTTGCTGGCCCTGATCA
CGACCCTGCCACTGTCATTGCGATGCTGAGCAGCCGGACGCTGCAGCGCG
TTTCTCATCTTCAAAGTGGTGCCTTTCGTAGGCTGATGGAAGCGCTTGCT
CTACCAACTCATTCATACATTCCTACAAACGCGCAGTTGGCTGTTATTCT
AAAGCACGCTGTGAGACATCTGCTTAGTGCCAGTCAAGACTTTTCATGGA
TCGACAGGATGTCTACCCTTAAATTTGCGGGGGGCCTCATCGAGAAGCGA
GCACTGTGGAGTTTGAGGTTCTCCAAAAGGGCATACCAGGAAAGAGAGAT
GCCTGGCGGAGGGGGGCCTTTTGCGTGAATGGCGAGACATTTTGTACCCC
CACCTACAGGTGGTGTAAGTGCTGTTCGACGCATGACGAATGATTAGCTA
TTTTGCTACAAATGCTATCTGAGTGGAGGAGATCGGGTGTCGCCTAATGA
CGTCGGAGGGGCCAGGACTGAGGACGCATGCTTGACAGCCCCCGCACAAA
GAAGAGATGCATAAAAGAAGAGAGGCATAGAGTGGTGTGATGA
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protein sequence of rna5318

>rna5318-protein ID=rna5318-protein|Name=rna5318|organism=Nannochloropsis gaditana|type=polypeptide|length=375bp
MPGVLMPADGLAGEFVGTKGETYQRPVISRGRPTSRFDQLGRIGEGRFGD
VYIGADRSTGKVVAIKEVRLPNLERNGLPKAALRELRALQHLEGHQHVVR
LLDAFPRGGSLALVLEYMPSDLEVMFRTRRSVFPESQIKSYMWMLLQGLS
YLHARRILHRDLKPSNILLSARGVIKIGDLGSARVDNDPPLEPYSHQVGT
AWYRAPELLLGARRYGPAIDMWGAGVIMGEMACLSPLFPGRGDLDQIFRV
LEVLGTPSASEIEQFPDYRKIEPPCMAKKDLSQVFPRVPPAGMCLFEQLV
ELDPTKRVSAETALTNRFFYIEPAIEHPGNFAVVTRKLPLSVTSILGSRF
ENCWKERKGDNVFEDVMKSCRLGRE
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mRNA from alignment at CM002465.1:699182..700635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5318 ID=rna5318|Name=rna5318|organism=Nannochloropsis gaditana|type=mRNA|length=1454bp|location=Sequence derived from alignment at CM002465.1:699182..700635- (Nannochloropsis gaditana)
GGCCTCCGCCACAATCTGCGTGCGGTACTCTTCCGTCCCTCTTCTAATAT
GTGTCAAGAGGAGATCTGTCTTTGCGTGCATTCAGTCCTCCTCATTAATT
GTGCAGGTGGTGCACAAACCTAGCCCAAGAAGGAAGGATTGGCAGACCGC
CACATTGCTATCTACCCCCCCCCGAACCGCAACATCTTTCGCTTTCTCAG
CCGACTCCGACACAATTTGCAATATCTGCTCGAAATGATCCCAGGCCGCA
CCTTCTAGGGCCATGCCGGGCGTCCTCATGCCCGCCGACGGACTTGCTGG
TGAGTTTGTTGGGACAAAGGGAGAAACTTACCAACGCCCCGTGATCAGCC
GGGGCCGGCCGACGTCTCGTTTTGACCAGTTGGGTAGGATTGGCGAAGGG
AGATTTGGAGACGTCTACATTGGCGCCGATCGGTCGACAGGCAAAGTCGT
GGCAATCAAAGAAGTGCGACTTCCCAATCTTGAAAGAAATGGTCTGCCGA
AGGCTGCTTTGCGGGAGCTGCGGGCTCTGCAGCACCTTGAGGGACACCAG
CACGTCGTTCGCCTCCTGGATGCTTTCCCACGAGGAGGATCTCTGGCGCT
TGTCCTGGAATACATGCCTAGCGACTTGGAAGTGATGTTTCGGACGCGGA
GGTCCGTTTTCCCGGAGAGCCAAATCAAGTCCTACATGTGGATGCTGCTT
CAAGGCCTTTCCTACCTCCATGCCCGGCGCATATTACACCGAGACTTGAA
ACCATCCAATATCTTGCTGTCTGCCCGTGGAGTCATTAAGATCGGGGACC
TCGGAAGCGCGCGTGTGGACAATGACCCTCCTCTCGAGCCTTACTCCCAC
CAAGTGGGCACAGCTTGGTACCGGGCGCCTGAATTGCTCCTTGGGGCGCG
ACGCTACGGTCCTGCGATAGACATGTGGGGTGCTGGGGTCATCATGGGGG
AGATGGCTTGCCTTTCCCCTCTCTTTCCCGGACGCGGCGACCTGGACCAG
ATCTTCCGCGTTTTGGAGGTCCTCGGCACCCCAAGCGCTTCGGAGATCGA
GCAGTTTCCCGACTACAGGAAGATAGAACCCCCCTGCATGGCGAAGAAGG
ACCTGTCGCAAGTCTTCCCCCGCGTGCCGCCTGCGGGGATGTGCCTGTTC
GAGCAGCTTGTCGAGCTGGACCCGACGAAGCGAGTTTCGGCAGAGACCGC
CTTGACCAATCGCTTCTTCTACATCGAGCCGGCAATTGAACACCCCGGAA
ATTTTGCGGTCGTAACGAGGAAGCTTCCTCTCAGCGTAACTTCGATATTG
GGAAGTCGCTTTGAGAATTGTTGGAAGGAAAGGAAGGGGGACAATGTCTT
CGAGGATGTAATGAAATCATGTAGATTAGGAAGGGAATGAAAATGGAAGA
TTTAAAATTTATGCCAAATTTTCATCACACCACTCTATGCCTCTCTTCTT
TTAT
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Coding sequence (CDS) from alignment at CM002465.1:699182..700635-

>rna5318 ID=rna5318|Name=rna5318|organism=Nannochloropsis gaditana|type=CDS|length=1128bp|location=Sequence derived from alignment at CM002465.1:699182..700635- (Nannochloropsis gaditana)
ATGCCGGGCGTCCTCATGCCCGCCGACGGACTTGCTGGTGAGTTTGTTGG
GACAAAGGGAGAAACTTACCAACGCCCCGTGATCAGCCGGGGCCGGCCGA
CGTCTCGTTTTGACCAGTTGGGTAGGATTGGCGAAGGGAGATTTGGAGAC
GTCTACATTGGCGCCGATCGGTCGACAGGCAAAGTCGTGGCAATCAAAGA
AGTGCGACTTCCCAATCTTGAAAGAAATGGTCTGCCGAAGGCTGCTTTGC
GGGAGCTGCGGGCTCTGCAGCACCTTGAGGGACACCAGCACGTCGTTCGC
CTCCTGGATGCTTTCCCACGAGGAGGATCTCTGGCGCTTGTCCTGGAATA
CATGCCTAGCGACTTGGAAGTGATGTTTCGGACGCGGAGGTCCGTTTTCC
CGGAGAGCCAAATCAAGTCCTACATGTGGATGCTGCTTCAAGGCCTTTCC
TACCTCCATGCCCGGCGCATATTACACCGAGACTTGAAACCATCCAATAT
CTTGCTGTCTGCCCGTGGAGTCATTAAGATCGGGGACCTCGGAAGCGCGC
GTGTGGACAATGACCCTCCTCTCGAGCCTTACTCCCACCAAGTGGGCACA
GCTTGGTACCGGGCGCCTGAATTGCTCCTTGGGGCGCGACGCTACGGTCC
TGCGATAGACATGTGGGGTGCTGGGGTCATCATGGGGGAGATGGCTTGCC
TTTCCCCTCTCTTTCCCGGACGCGGCGACCTGGACCAGATCTTCCGCGTT
TTGGAGGTCCTCGGCACCCCAAGCGCTTCGGAGATCGAGCAGTTTCCCGA
CTACAGGAAGATAGAACCCCCCTGCATGGCGAAGAAGGACCTGTCGCAAG
TCTTCCCCCGCGTGCCGCCTGCGGGGATGTGCCTGTTCGAGCAGCTTGTC
GAGCTGGACCCGACGAAGCGAGTTTCGGCAGAGACCGCCTTGACCAATCG
CTTCTTCTACATCGAGCCGGCAATTGAACACCCCGGAAATTTTGCGGTCG
TAACGAGGAAGCTTCCTCTCAGCGTAACTTCGATATTGGGAAGTCGCTTT
GAGAATTGTTGGAAGGAAAGGAAGGGGGACAATGTCTTCGAGGATGTAAT
GAAATCATGTAGATTAGGAAGGGAATGA
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Synonyms
Publications