rna5317, rna5317 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5317
Unique Name	rna5317
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1217
Alignment location	CM002465.1:696795..699214 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100005g113.6726.mrna
Orig protein id	gnl\|cribi\|Naga_100005g113.6726
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:696795..699214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g113	gene5137	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5317	rna5317-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25432.1	cds5304	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:696795..699214+
coding sequence from alignment at CM002465.1:696795..699214+

mRNA sequence

>rna5317 ID=rna5317|Name=rna5317|organism=Nannochloropsis gaditana|type=mRNA|length=1217bp
GACACTGCCCACCCTCTGCCAGGAAATTGGAGGTCATGACCACTAGCATC
ACCGGAGCTGTAACAGTTAAAGAGGCACAATATTTTGTGGGGACGCTGAG
GGTGCGACAACGTGAAGAAGCGGCGAGCCGAGCAACGTCCTCCCTTCAGT
CTATTCAGATCCTCGATGATTCCGATCCACAAGCACTTGCAACCGTTCTA
GATAGTTATGACACTTTCTTGTTCGACTGTGATGGGGTCCTTTGGCGCGG
GAGCGCTCTCCTTCCAGGGTCTACGCGTACCCTGGCCCTTCTGCGGGCTC
AGGGAAAGCGACTCTTCTTTGTAACAAACAACAGTAGCAAAAGCCGTGCT
GAGTATGTCGCCAAGTTTACTAAATTGAATATTCCTGTAGACATTTCGGA
AATCGTACCTTCTTCGTGGGCTGCAGCTGAATATGTACGAATTCAATATC
CTGAGGTGAAAAAAGCATTTGTGATTGGCTCGCAGGGTCTTGTAGATGAG
TTAAATCTTGTTGGCGTCACCTCTCTGTGTGGAGCTGATCAGTCGTACGC
CACACGATGTTTTGCAACTGAGAGTGACTTCCTCTCAGCGGAAATTGACA
AAGATGTCACAGCTGTACTGTGTGGATGGGATTTGACTTTTAACTTTGCA
AAATTAAGTCTCGCGAGTCTTTACTTGCAAAGAAAGCCGACGGCGGCCTT
CATCGCGACCAACAAGGATGCATTCGATAAGCTAGCAGATCGAAACATCC
CCGGAAATGGTTGCGCCGTTGCGGCCCTCGAACAGAGTGTCGGACGAGAG
GCAGTGAATGTAGGTAAACCATCGCGATGGTTGATAAATTATCTGTTGAG
GACGTACAACTTAAACCCAAGAAGAACATTGGTAATTGGCGATAGGCTAG
ACACTGATATTCAGCTGGGTATCGCGGGGGGTTGTGATACTGTCCTCGTA
GGCACGGGGTGCACGACCACGGAAGACGCCTTACTTGAACAGGAAGCCCG
GAAGGTAGGGATGCCGACTTATGTGCTATCGCATGTGGGTGCATTCAGCT
TAAGCGCGATACCATCCAAGAATTGAAATAGAAGTAAGGTAAGAACCAAA
AGCGAGAAAATCGCACATAGCGTAGGCTCCCACATGCAGTAGGAGACACA
TAATTGAGCAAAGACTACAATATAAATGAATGGACAATGATGTGAGCAAA
AAATACCGACGCTTTCA

protein sequence of rna5317

>rna5317-protein ID=rna5317-protein|Name=rna5317|organism=Nannochloropsis gaditana|type=polypeptide|length=691bp
MSSKSDAYKRRQKNRLLRKYGDIFKLLLATLTSVMSGSFAWSRPGSKSLS
CKQETSTSKKKQRYQLLGVLLPLFLTLSRPLQIHGFHASLFGQRHWRSSQ
KHMLFLLSKSNSITLLHDISQHRSRKSMSTFPFSSLPSGTPLFSINDEKD
FHAASSNFEKALEDDINKTKENPIELLYSTHMLEDFWDELPDEKLYLLLD
KLRILEKETSGIGSDVGQDATLKRFSDYCQNRQRHIDIQSTLISPDPNGL
FAQLRASWRNSESHGVENFQSIVTTRLNALQMQDLAQIVHKTLSSTSSLS
RQRIPPSLTDLLLETITARVRANSSPSSPSLPGSTWVRLLQASSSLSPAV
KARLAGQQFRQALVLDLPHRLSSLAPADLALAVQIWPRPPAHLDAFSRRL
IQAILAQSIDSLHRFKPLELVQLLRGLRRPMTRDRRTTIEALDAARLETP
DVNNRQRLIKAATKQLARRVEELGPDDLSAFMQMCVTDLTFEDWARDLGV
AFPRAYTRAVFKHIPAMRPLQLLPVLSAFLFLHTVFHFSAGTDYYRRLEN
LVLASFEKNGRDVNHSDLVLFVHTFAMLAGPDHDPATVIAMLSSRTLQRV
SHLQSGAFRRLMEALALPTHSYIPTNAQLAVILKHAVRHLLSASQDFSWI
DRMSTLKFAGGLIEKRALWSLRFSKRAYQEREMPGGGGPFA

mRNA from alignment at CM002465.1:696795..699214+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5317 ID=rna5317|Name=rna5317|organism=Nannochloropsis gaditana|type=mRNA|length=2420bp|location=Sequence derived from alignment at CM002465.1:696795..699214+ (Nannochloropsis gaditana)
ATATGTCTTCTAAGTCTGACGCATATAAAAGGCGGCAAAAGAATCGACTG
TTGAGAAAATATGGAGACATATTCAAACTGCTCCTCGCGACGCTCACGTC
CGTCATGTCGGGCTCTTTTGCCTGGTCGCGGCCTGGATCCAAAAGCCTTA
GCTGCAAACAAGAGACCTCAACGTCAAAAAAAAAGCAGCGATATCAGCTT
CTGGGGGTGCTATTACCTCTCTTTTTGACCTTATCGAGGCCACTACAAAT
ACACGGCTTCCACGCTAGCCTGTTCGGACAGCGGCATTGGCGGTCCTCCC
AGAAACATATGTTGTTCCTGCTCTCAAAGTCAAATTCGATTACGCTTCTT
CATGATATCTCACAACACCGATCAAGAAAATCAATGTCTACATTTCCATT
TTCGAGCCTTCCTTCCGGCACACCACTCTTTTCCATTAATGACGAAAAAG
ATTTTCATGCTGCTTCAAGCAACTTTGAGAAGGCTTTAGAAGACGACATC
AACAAGACGAAAGAGAATCCCATCGAGCTGTTGTACTCAACTCACATGTT
AGAAGATTTTTGGGATGAATTGCCGGATGAAAAGCTCTATCTGCTGCTGG
ACAAACTAAGAATACtagaaaaggagacaagTGGAATCGGGAGCGATGTG
GGGCAGGACGCGACTTTGAAACGATTTTCTGACTACTGTCAGAATCGACA
GAGGCACATTGACATCCAGAGTACTTTGATTTCACCTGATCCAAACGGTT
TATTCGCGCAGCTCCGAGCTTCTTGGAGGAACTCAGAGTCGCATGGCGTG
GAGAACTTCCAGGTACCCTTGTAGTCGTGGCGGGCTGCTAAGAAAACACG
CATCCTTTCACAAATATGCTTTGTGAAATACTTATATGCAAGTGACATAC
TCACTTTCCGCAATTAAACATACACGGTCCACTTTCCAGAGCATCGTGAC
GACGAGACTCAACGCTTTGCAAATGCAAGACTTGGCCCAGATCGTACATA
AGACACTTTCTTCTACATCATCGCTTTCCCGTCAGCgcatccccccctct
ctcaccgacctcctcctcgaaaCCATCACCGCCCGTGTTCGTGCGaattc
ttctccttcgtccccgtccCTTCCCGGCTCTACGTGGGTGCGCCTACTGC
AAGCCTCAAGCTCTCTTTCGCCCGCGGTGAAGGCCCGCCTCGCTGGTCAA
CAATTTCGGCAAGCGCTTGTTCTCGACCTCCCGCACCGTCTCTCCAGCCT
CGCACCTGCTGATCTCGCACTCGCCGTCCAAAtttggcctcgtcctcccg
cccacctaGACGCGTTTAGCCGCAGGCTTATCCAAGCAATCCTGGCGCAG
AGCATCGACAGCTTGCACCGATTCAAGCCCCTTGAGCTCGTTCAACTCCT
CAGAGGGCTCCGCCGGCCTATGACGAGGGATCGACGCACGACCATAGAGG
CGCTGGATGCTGCGCGGCTGGAAACACCTGACGTCAACAACCGGCAGCGG
CTGATCAAAGCAGCGACAAAGCAGTTAGCCCGtcgggtggaggagctggg
acCTGACGACTTGTCCGCATTCATGCAAATGTGCGTCACTGACCTCACCT
TTGAGGACTGGGCAAGAGACTTGGGGGTGGCGTTCCCCAGAGCCTATACT
AGAGCGGTCTTCAAGCACATCCCGGCCATGCGTCCTTTGCAGCTGCTGCC
TGTGTTGTCAGCATTTCTATTTCTCCACACGGTTTTTCACTTTTCTGCAG
GTACAGATTACTATCGACGATTGGAAAACCTGGTCCTGGCGTCGTTCGAG
AAAAACGGAAGAGACGTGAACCATTCCGATCTGGTTCTCTTCGTCCACAC
ATTCGCCATGCTTGCTGGCCCTGATCACGACCCTGCCACTGTCATTGCGA
TGCTGAGCAGCCGGACGCTGCAGCGCGTTTCTCATCTTCAAAGTGGTGCC
TTTCGTAGGCTGATGGAAGCGCTTGCTCTACCAACTCATTCATACATTCC
TACAAACGCGCAGTTGGCTGTTATTCTAAAGCACGCTGTGAGACATCTGC
TTAGTGCCAGTCAAGACTTTTCATGGATCGACAGGATGTCTACCCTTAAA
TTTGCGGGGGGCCTCATCGAGAAGCGAGCACTGTGGAGTTTGAGGTTCTC
CAAAAGGGCATACCAGGAAAGAGAGATgcctggcggaggggggcCTTTTG
CGTGAATGGCGAGACATTTTGTACCCCCACCTACAGGTGGTGTAAGTGCT
GTTCGACGCATGACGAATGATTAGCTATTTTGCTACAAATGCTATCTgag
tggaggagatcgggTGTCGCCTAATGACGTCGGAGGGGCCAGGACTGAGG
ACGCATGCTTGACAGCCCCCGCACAAAGAAGAGATGCAtaaaagaagaga
ggcatAGAGTGGTGTGATGA

Coding sequence (CDS) from alignment at CM002465.1:696795..699214+

>rna5317 ID=rna5317|Name=rna5317|organism=Nannochloropsis gaditana|type=CDS|length=4152bp|location=Sequence derived from alignment at CM002465.1:696795..699214+ (Nannochloropsis gaditana)
ATGTCTTCTAAGTCTGACGCATATAAAAGGCGGCAAAAGAATCGACTGTT
GAGAAAATATGGAGACATATTCAAACTGCTCCTCGCGACGCTCACGTCCG
TCATGTCGGGCTCTTTTGCCTGGTCGCGGCCTGGATCCAAAAGCCTTAGC
TGCAAACAAGAGACCTCAACGTCAAAAAAAAAGCAGCGATATCAGCTTCT
GGGGGTGCTATTACCTCTCTTTTTGACCTTATCGAGGCCACTACAAATAC
ACGGCTTCCACGCTAGCCTGTTCGGACAGCGGCATTGGCGGTCCTCCCAG
AAACATATGTTGTTCCTGCTCTCAAAGTCAAATTCGATTACGCTTCTTCA
TGATATCTCACAACACCGATCAAGAAAATCAATGTCTACATTTCCATTTT
CGAGCCTTCCTTCCGGCACACCACTCTTTTCCATTAATGACGAAAAAGAT
TTTCATGCTGCTTCAAGCAACTTTGAGAAGGCTTTAGAAGACGACATCAA
CAAGACGAAAGAGAATCCCATCGAGCTGTTGTACTCAACTCACATGTTAG
AAGATTTTTGGGATGAATTGCCGGATGAAAAGCTCTATCTGCTGCTGGAC
AAACTAAGAATACtagaaaaggagacaagTGGAATCGGGAGCGATGTGGG
GCAGGACGCGACTTTGAAACGATTTTCTGACTACTGTCAGAATCGACAGA
GGCACATTGACATCCAGAGTACTTTGATTTCACCTGATCCAAACGGTTTA
TTCGCGCAGCTCCGAGCTTCTTGGAGGAACTCAGAGTCGCATGGCGTGGA
GAACTTCCAGAGCATCGTGACGACGAGACTCAACGCTTTGCAAATGCAAG
ACTTGGCCCAGATCGTACATAAGACACTTTCTTCTACATCATCGCTTTCC
CGTCAGCgcatccccccctctctcaccgacctcctcctcgaaaCCATCAC
CGCCCGTGTTCGTGCGaattcttctccttcgtccccgtccCTTCCCGGCT
CTACGTGGGTGCGCCTACTGCAAGCCTCAAGCTCTCTTTCGCCCGCGGTG
AAGGCCCGCCTCGCTGGTCAACAATTTCGGCAAGCGCTTGTTCTCGACCT
CCCGCACCGTCTCTCCAGCCTCGCACCTGCTGATCTCGCACTCGCCGTCC
AAAtttggcctcgtcctcccgcccacctaGACGCGTTTAGCCGCAGGCTT
ATCCAAGCAATCCTGGCGCAGAGCATCGACAGCTTGCACCGATTCAAGCC
CCTTGAGCTCGTTCAACTCCTCAGAGGGCTCCGCCGGCCTATGACGAGGG
ATCGACGCACGACCATAGAGGCGCTGGATGCTGCGCGGCTGGAAACACCT
GACGTCAACAACCGGCAGCGGCTGATCAAAGCAGCGACAAAGCAGTTAGC
CCGtcgggtggaggagctgggacCTGACGACTTGTCCGCATTCATGCAAA
TGTGCGTCACTGACCTCACCTTTGAGGACTGGGCAAGAGACTTGGGGGTG
GCGTTCCCCAGAGCCTATACTAGAGCGGTCTTCAAGCACATCCCGGCCAT
GCGTCCTTTGCAGCTGCTGCCTGTGTTGTCAGCATTTCTATTTCTCCACA
CGGTTTTTCACTTTTCTGCAGGTACAGATTACTATCGACGATTGGAAAAC
CTGGTCCTGGCGTCGTTCGAGAAAAACGGAAGAGACGTGAACCATTCCGA
TCTGGTTCTCTTCGTCCACACATTCGCCATGCTTGCTGGCCCTGATCACG
ACCCTGCCACTGTCATTGCGATGCTGAGCAGCCGGACGCTGCAGCGCGTT
TCTCATCTTCAAAGTGGTGCCTTTCGTAGGCTGATGGAAGCGCTTGCTCT
ACCAACTCATTCATACATTCCTACAAACGCGCAGTTGGCTGTTATTCTAA
AGCACGCTGTGAGACATCTGCTTAGTGCCAGTCAAGACTTTTCATGGATC
GACAGGATGTCTACCCTTAAATTTGCGGGGGGCCTCATCGAGAAGCGAGC
ACTGTGGAGTTTGAGGTTCTCCAAAAGGGCATACCAGGAAAGAGAGATgc
ctggcggaggggggcCTTTTGCGTGAATGTCTTCTAAGTCTGACGCATAT
AAAAGGCGGCAAAAGAATCGACTGTTGAGAAAATATGGAGACATATTCAA
ACTGCTCCTCGCGACGCTCACGTCCGTCATGTCGGGCTCTTTTGCCTGGT
CGCGGCCTGGATCCAAAAGCCTTAGCTGCAAACAAGAGACCTCAACGTCA
AAAAAAAAGCAGCGATATCAGCTTCTGGGGGTGCTATTACCTCTCTTTTT
GACCTTATCGAGGCCACTACAAATACACGGCTTCCACGCTAGCCTGTTCG
GACAGCGGCATTGGCGGTCCTCCCAGAAACATATGTTGTTCCTGCTCTCA
AAGTCAAATTCGATTACGCTTCTTCATGATATCTCACAACACCGATCAAG
AAAATCAATGTCTACATTTCCATTTTCGAGCCTTCCTTCCGGCACACCAC
TCTTTTCCATTAATGACGAAAAAGATTTTCATGCTGCTTCAAGCAACTTT
GAGAAGGCTTTAGAAGACGACATCAACAAGACGAAAGAGAATCCCATCGA
GCTGTTGTACTCAACTCACATGTTAGAAGATTTTTGGGATGAATTGCCGG
ATGAAAAGCTCTATCTGCTGCTGGACAAACTAAGAATACtagaaaaggag
acaagTGGAATCGGGAGCGATGTGGGGCAGGACGCGACTTTGAAACGATT
TTCTGACTACTGTCAGAATCGACAGAGGCACATTGACATCCAGAGTACTT
TGATTTCACCTGATCCAAACGGTTTATTCGCGCAGCTCCGAGCTTCTTGG
AGGAACTCAGAGTCGCATGGCGTGGAGAACTTCCAGAGCATCGTGACGAC
GAGACTCAACGCTTTGCAAATGCAAGACTTGGCCCAGATCGTACATAAGA
CACTTTCTTCTACATCATCGCTTTCCCGTCAGCgcatccccccctctctc
accgacctcctcctcgaaaCCATCACCGCCCGTGTTCGTGCGaattcttc
tccttcgtccccgtccCTTCCCGGCTCTACGTGGGTGCGCCTACTGCAAG
CCTCAAGCTCTCTTTCGCCCGCGGTGAAGGCCCGCCTCGCTGGTCAACAA
TTTCGGCAAGCGCTTGTTCTCGACCTCCCGCACCGTCTCTCCAGCCTCGC
ACCTGCTGATCTCGCACTCGCCGTCCAAAtttggcctcgtcctcccgccc
acctaGACGCGTTTAGCCGCAGGCTTATCCAAGCAATCCTGGCGCAGAGC
ATCGACAGCTTGCACCGATTCAAGCCCCTTGAGCTCGTTCAACTCCTCAG
AGGGCTCCGCCGGCCTATGACGAGGGATCGACGCACGACCATAGAGGCGC
TGGATGCTGCGCGGCTGGAAACACCTGACGTCAACAACCGGCAGCGGCTG
ATCAAAGCAGCGACAAAGCAGTTAGCCCGtcgggtggaggagctgggacC
TGACGACTTGTCCGCATTCATGCAAATGTGCGTCACTGACCTCACCTTTG
AGGACTGGGCAAGAGACTTGGGGGTGGCGTTCCCCAGAGCCTATACTAGA
GCGGTCTTCAAGCACATCCCGGCCATGCGTCCTTTGCAGCTGCTGCCTGT
GTTGTCAGCATTTCTATTTCTCCACACGGTTTTTCACTTTTCTGCAGGTA
CAGATTACTATCGACGATTGGAAAACCTGGTCCTGGCGTCGTTCGAGAAA
AACGGAAGAGACGTGAACCATTCCGATCTGGTTCTCTTCGTCCACACATT
CGCCATGCTTGCTGGCCCTGATCACGACCCTGCCACTGTCATTGCGATGC
TGAGCAGCCGGACGCTGCAGCGCGTTTCTCATCTTCAAAGTGGTGCCTTT
CGTAGGCTGATGGAAGCGCTTGCTCTACCAACTCATTCATACATTCCTAC
AAACGCGCAGTTGGCTGTTATTCTAAAGCACGCTGTGAGACATCTGCTTA
GTGCCAGTCAAGACTTTTCATGGATCGACAGGATGTCTACCCTTAAATTT
GCGGGGGGCCTCATCGAGAAGCGAGCACTGTGGAGTTTGAGGTTCTCCAA
AAGGGCATACCAGGAAAGAGAGATgcctggcggaggggggcCTTTTGCGT
GA

Synonyms

Publications