rna5314, rna5314 (mRNA) Nannochloropsis gaditana

Overview
Namerna5314
Unique Namerna5314
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1237
Alignment locationCM002465.1:691251..693581 -

Link to JBrowse

Properties
Property NameValue
Productserine threonine-protein phosphatase 6 regulatory
Orig transcript idgnl|cribi|Naga_100005g110.6666.mrna
Orig protein idgnl|cribi|Naga_100005g110.6666
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:691251..693581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g110gene5134Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25372.1cds5301Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5314rna5314-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5314 ID=rna5314|Name=rna5314|organism=Nannochloropsis gaditana|type=mRNA|length=1237bp
ACGTCGATTTTCTGGGTTATATTGTCGATTTCACAGCTAGTATTCATCCA
TGTACTGATTTGCTCTCGTTAAACTACATTTCGATACAACTGTGCTGTCC
AGTGGCAGGTGCATTAAAATTCGCAAGATACTTGAAGCTTTTCCACCTGA
AAGCCTTCCTGACACTCGCACAAACCAACAAAAAGACGTATCTCCTCCAC
TGGGAAATATGAAGCTGCGTGCCTTGACCAGCTTAGTCTCCTGCTCCCTT
GTCCAGGCATTCTTGGTGCCTGTTGCGCCTGGCATGGGTAGACCTCGGGA
GCCACTACGGCCCTCCTCGGCCGTCCTCGCTTCAGCATCGGAGCCTGTCG
TGGAGGCTCTGGCAGGGAGGAAGCCTGAGTACATTTTGATGGAGGACGGA
CACGGACGAAGCATAAACACGACGATGATTGCATACTTGCGGCAGGACGG
AAAGCGATATTGTTTGGGCACGCCAGTGGACAGCCCCATGGTGCTCATGG
ATTCAGGGGGTCGGCCCATCGACCCCTCAAGTGCATTGGCTGAGGGCATG
TTCTATCAATTGGATGATTACTTCACCAATAAGGGCTATGAGATTCTACA
CACCGCTGGATTCTTGACTATCGCGGGGGAGCCTGACTGGTTTGATGACG
AGGAGTTGGAGGAAGGGGAGGAGGAGGAGGACAGTGACGACGAGTACGAC
AGCGAGGAGGAAGATGATGAAAGAGAAGAGGCAGCGACGGCGCAGATGGC
GCGTCAAGAAGCAGCACGCAAGGATGACAGCGTCCGGGTGGATCCTATCT
GTGACGTGGAATACGATGGCTCCATGTACCGCATTGTGCAGCTCTTAGAC
CGGGTTCCCCTGAGTGCCGAGGAGGACGCGGAGGGCAAATGGGTACTTGT
GAACGATGCGGACACCCATCTGGGGCTGGAGAAGAGGGCAAAGAAATGAG
TGACAAAGGAGAAGTGTTGTGGGCTGTCTCAATTATGGTGTCTGTGAGAG
AAGATGGTTTGGGCCGGCATGCACGAATTTCCCCGTGAGCGCAGGCATCG
TCACGTGTGAGGGGTCTTCCAAGGCACTGAGGGTCAGTGTGCCCGTCGCT
GAGGGGTTAATTAAAGCATGAAGACGCCCCGGCGTGGCAGTTTGACAGAT
TCGACGTGTCAATCAATCTCAAGGAACACCACAATATTTGTCGAGCCCAG
CCACTGCCTCTTGTTGTCACGCAGACAGTACTCCCAT
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protein sequence of rna5314

>rna5314-protein ID=rna5314-protein|Name=rna5314|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MFMSLVSGSSLINHLSPLHSGMFAFLSQGPLGELLAPVKAPHQQLHQAIE
EHRHDKANQLLQEGVYFNAPDAGRGDALPIHTACQAGNQTMIDKLMEMGA
DARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVA
ESHIVRQFLLPLQLRAEPEPAAGSLAAVHNPDVIRDYSNLPPPPTASSYS
APPPPASLHGMSSSGTHLPQASKPAPKVDRPIVADGFHCSVGNPELAAKY
GHIKTDIPMAPPPSASGLPARTCAGTGEGGEEGQRGPPRPAANPTQYSAF
AAYGGRPPPRYVTYNANDNTSAPFIHPAGPPPPVQQPPGPPHWQQMHHQQ
SGGLLTHTGRNASSPPQTASPFSNESFQQAPSPAVPSGSPPSSSATSSPV
PPAGYRASPLPPPPPPPHPSRHCSLPNSRPP
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mRNA from alignment at CM002465.1:691251..693581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5314 ID=rna5314|Name=rna5314|organism=Nannochloropsis gaditana|type=mRNA|length=2331bp|location=Sequence derived from alignment at CM002465.1:691251..693581- (Nannochloropsis gaditana)
GTTTGTACCTTGAGACTTGAGAGGGTGCTGCTGAGAAAATGGTGACGAGT
TCGTTCCCCTTGCAGAACCATTAGCTGGAGGGGAACGAGCGGAGAGCGGG
AGAAACCGACAAAGTCGCCTAGACAAATACGGCCTCGTTCAGGAATCGCA
AAAACTAAGAGGCACCTCAGCAGTTAAAAAATACATGCGCACCATTGTTC
CATTGATGTGGGACGGGAAAAAAAGCTTTCTATTGTGCTCCAAGAAGCCA
TCCTCTCTGCGTCCATCCCACATCGTATATTACCCATCGTTCCAAGCCAT
CTCCTTTTGTGTGTCACTCCTCTATGACATAGGTCAAGTACGCTAGGTGC
AATACATGCACCTTCATTTTATGAAATTTGGCGAACGACTGGTTGTCTCT
TTCCTGTTTGATTTTGATAGGCGTTGCCCGATCAGATGTTCATGTCTTTA
GTCTCCGGCTCCTCACTGATCAACCATCTTTCCCCACTTCACTCAGGAAT
GTTCGCTTTTCTCTCTCAAGGACCGCTTGGAGAGCTTCTAGCGCCCGTGA
AGGCGCCACACCAACAGCTTCATCAGGCCATCGAGGAACATCGTCACGAC
AAGGCAAACCAGCTTCTGCAAGAAGGAGTGTATTTCAATGCTCCTGACGC
GGGACGGGGGGATGCACTTCCCATCCACACAGCTTGTCAAGCTGGCAACC
AGACGATGATTGACAAGCTGATGGAGATGGGCGCGGACGCGAGGAGCGCC
ACAGACCGCCACGGAAACGGAACCCTGCACGCGGCGGCCAAGGGAGGGAA
GCTGGAGACAGTCAAATTTCTCCTGGCCCATGGATTAGACGTGTCTCGCC
GCAATGCGTACCGACAGACCGCGTATGACGTAGCTGAGAGCCACATTGTC
AGGCAGTTCTTACTGCCGCTCCAGCTGCGTGCGGAGCCCGAGCCCGCGGC
GGGGAGCTTGGCTGCGGTCCACAATCCCGACGTCATCAGAGACTACTCCA
ACCTTCCCCCTCCCCCGACCGCGTCCTCGTACTCCGCCCCTCCTCCTCCC
GCTTCCCTCCATGGGATGAGTAGCAGCGGGACCCATCTCCCGCAAGCCAG
CAAGCCGGCCCCCAAGGTGGATCGGCCCATTGTGGCGGACGGCTTTCATT
GCAGCGTGGGCAACCCCGAGCTCGCGGCCAAGTACGGGCACATCAAGACC
GACATCCCCATGGCCCCTCCGCCGAGTGCGAGTGGCCTTCCCGCCCGGAC
GTGCGCGGGGACCGGGGAAGGCGGGGAAGAGGGGCAGAGAGGGCCCCCGA
GGCCAGCAGCGAACCCGACGCAGTACTCAGCCTTCGCGGCCTACGGAGGA
CGACCCCCGCCTCGTTATGTCACCTACAACGCCAATGACAACACCTCTGC
GCCTTTCATTCATCCTGCAGGCCCACCGCCGCCTGTGCAGCAGCCTCCCG
GCCCCCCGCATTGGCAGCAGATGCACCACCAACAGTCGGGCGGCTTGCTC
ACCCACACCGGTAGAAACGCCTCTTCTCCTCCTCAGACGGCATCTCCTTT
TTCTAACGAGAGCTTTCAACAGGCTCCCTCTCCAGCCGTGCCAAGCGGGT
CTCCTCCTTCCTCCTCCGCCACCAGCTCCCCCGTCCCTCCAGCCGGTTAC
CGGGCCAGCCCTTTGCCTCCGCCCCCCCCCCCCCCCCACCCCTCACGACA
CTGCAGCCTCCCAAACTCCCGTCCTCCATGATCTACCCCTCGCAACACCA
ACAGCCCCAACAGCATCAGGCAGCGCGCCCTAGCTGCACGTCCAACATTC
CCACCCTGCCTGCGGCCAACAGCATCAGTGTCTTCCGACCCGTGGCGGAC
AACGGCGAGGACGCCGTCTCCTTGGACGAGACATAGGGTGGAGAAGGAGG
TACTGCCTGACGCTTTCATGCGACAGGACGCCGAGAAAGATATATCAATG
GAAGGTTGGAGCATGGAGGGATTTGGTTTCTCGCCTGCGGACTTTGCTTG
TTCCAGCAGACGACGATTGGATGACAGATAAATTGCGCGAAATGCCGCGC
CTCCAGGTAGGTAGCTTACTTTCCATAGATGAGGAGCGATCCGTGTTTCG
GCGTATTGCGTGGACTGAAGCAGATGAGCGCGGGAAGCAGCGACGGCGTG
GATAACAGGGAATTCTGGGCAAGAAAGATGTATGCAATAGATGGCTCGCC
ACGTGCACGCAGTGATGAGATAGCGTATTGGGTATGGCACAAGGTGGAAT
TAGATAAGAGACCGGGTCTAGGGGACGCCGCGCATGCTACATAATTTTTA
AAAGAACATTGACATTGATGAGAAAAAAATT
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Coding sequence (CDS) from alignment at CM002465.1:691251..693581-

>rna5314 ID=rna5314|Name=rna5314|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at CM002465.1:691251..693581- (Nannochloropsis gaditana)
ATGTTCATGTCTTTAGTCTCCGGCTCCTCACTGATCAACCATCTTTCCCC
ACTTCACTCAGGAATGTTCGCTTTTCTCTCTCAAGGACCGCTTGGAGAGC
TTCTAGCGCCCGTGAAGGCGCCACACCAACAGCTTCATCAGGCCATCGAG
GAACATCGTCACGACAAGGCAAACCAGCTTCTGCAAGAAGGAGTGTATTT
CAATGCTCCTGACGCGGGACGGGGGGATGCACTTCCCATCCACACAGCTT
GTCAAGCTGGCAACCAGACGATGATTGACAAGCTGATGGAGATGGGCGCG
GACGCGAGGAGCGCCACAGACCGCCACGGAAACGGAACCCTGCACGCGGC
GGCCAAGGGAGGGAAGCTGGAGACAGTCAAATTTCTCCTGGCCCATGGAT
TAGACGTGTCTCGCCGCAATGCGTACCGACAGACCGCGTATGACGTAGCT
GAGAGCCACATTGTCAGGCAGTTCTTACTGCCGCTCCAGCTGCGTGCGGA
GCCCGAGCCCGCGGCGGGGAGCTTGGCTGCGGTCCACAATCCCGACGTCA
TCAGAGACTACTCCAACCTTCCCCCTCCCCCGACCGCGTCCTCGTACTCC
GCCCCTCCTCCTCCCGCTTCCCTCCATGGGATGAGTAGCAGCGGGACCCA
TCTCCCGCAAGCCAGCAAGCCGGCCCCCAAGGTGGATCGGCCCATTGTGG
CGGACGGCTTTCATTGCAGCGTGGGCAACCCCGAGCTCGCGGCCAAGTAC
GGGCACATCAAGACCGACATCCCCATGGCCCCTCCGCCGAGTGCGAGTGG
CCTTCCCGCCCGGACGTGCGCGGGGACCGGGGAAGGCGGGGAAGAGGGGC
AGAGAGGGCCCCCGAGGCCAGCAGCGAACCCGACGCAGTACTCAGCCTTC
GCGGCCTACGGAGGACGACCCCCGCCTCGTTATGTCACCTACAACGCCAA
TGACAACACCTCTGCGCCTTTCATTCATCCTGCAGGCCCACCGCCGCCTG
TGCAGCAGCCTCCCGGCCCCCCGCATTGGCAGCAGATGCACCACCAACAG
TCGGGCGGCTTGCTCACCCACACCGGTAGAAACGCCTCTTCTCCTCCTCA
GACGGCATCTCCTTTTTCTAACGAGAGCTTTCAACAGGCTCCCTCTCCAG
CCGTGCCAAGCGGGTCTCCTCCTTCCTCCTCCGCCACCAGCTCCCCCGTC
CCTCCAGCCGGTTACCGGGCCAGCCCTTTGCCTCCGCCCCCCCCCCCCCC
CCACCCCTCACGACACTGCAGCCTCCCAAACTCCCGTCCTCCATGA
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Synonyms
Publications