EWM25372.1, cds5301 (CDS) Nannochloropsis gaditana

Overview
NameEWM25372.1
Unique Namecds5301
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:691851..693146 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25372.1
Productserine threonine-protein phosphatase 6 regulatory
Orig transcript idgnl|cribi|Naga_100005g110.6666.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:691851..693146 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|585107133|gb|EWM25372.1| (serine threonine-protein phosphatase 6 regulatory [Nannochloropsis gaditana])

HSP 1 Score: 858.981 bits (2218), Expect = 0.000e+0
Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 0
Query:    1 MFMSLVSGSSLINHLSPLHSGMFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAEPEPAAGSLAAVHNPDVIRDYSNLPPPPTASSYSAPPPPASLHGMSSSGTHLPQASKPAPKVDRPIVADGFHCSVGNPELAAKYGHIKTDIPMAPPPSASGLPARTCAGTGEGGEEGQRGPPRPAANPTQYSAFAAYGGRPPPRYVTYNANDNTSAPFIHPAGPPPPVQQPPGPPHWQQMHHQQSGGLLTHTGRNASSPPQTASPFSNESFQQAPSPAVPSGSPPSSSATSSPVPPAGYRASPLPPPPPPPHPSRHCSLPNSRPP 431
            MFMSLVSGSSLINHLSPLHSGMFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAEPEPAAGSLAAVHNPDVIRDYSNLPPPPTASSYSAPPPPASLHGMSSSGTHLPQASKPAPKVDRPIVADGFHCSVGNPELAAKYGHIKTDIPMAPPPSASGLPARTCAGTGEGGEEGQRGPPRPAANPTQYSAFAAYGGRPPPRYVTYNANDNTSAPFIHPAGPPPPVQQPPGPPHWQQMHHQQSGGLLTHTGRNASSPPQTASPFSNESFQQAPSPAVPSGSPPSSSATSSPVPPAGYRASPLPPPPPPPHPSRHCSLPNSRPP
Sbjct:    1 MFMSLVSGSSLINHLSPLHSGMFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAEPEPAAGSLAAVHNPDVIRDYSNLPPPPTASSYSAPPPPASLHGMSSSGTHLPQASKPAPKVDRPIVADGFHCSVGNPELAAKYGHIKTDIPMAPPPSASGLPARTCAGTGEGGEEGQRGPPRPAANPTQYSAFAAYGGRPPPRYVTYNANDNTSAPFIHPAGPPPPVQQPPGPPHWQQMHHQQSGGLLTHTGRNASSPPQTASPFSNESFQQAPSPAVPSGSPPSSSATSSPVPPAGYRASPLPPPPPPPHPSRHCSLPNSRPP 431          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|325189089|emb|CCA23616.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325189666|emb|CCA24150.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 146.747 bits (369), Expect = 1.195e-36
Identity = 102/259 (39.38%), Postives = 135/259 (52.12%), Query Frame = 0
Query:   22 MFAFLSQG----PLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAEP-EPAAGSL--AAVHNPDVIRDYSNLPPPPTASSYS---------APPPPASLHGMSSSGTHLPQASKPAPKVDRPIVADGFHCSVGNPELAAKYGHIKTDIPMAPPPS 264
            MF+FL++      LG++LAP   P +QLH AIEE   +K  +LL E              LPIHTA   G   MI+ L++ G D      R GN TLH AA   + ETVK+L+  G + + RN  RQTAYDVA+   +RQFLLPLQ R E    AA  L        D +    +L PPPT   Y+          P  P +++  + S   +P+ +    +  RPI ADGF  SVGN +L AK+G++K     APPPS
Sbjct:    1 MFSFLAEKLNVKNLGDILAPSSTPEEQLHAAIEEGMDEKFMRLLDESQLDLKNTLNPAGYLPIHTAAYHGRIRMIECLLDRGVDVNVLGPR-GNTTLHVAAAQSREETVKYLINRGANPAIRNNTRQTAYDVAKGDQIRQFLLPLQFRHEDLNEAAAYLPPGITPTTDPMDRKPDLAPPPTDLEYNTNLAQMPNAVPMMPNNMYA-APSHCAIPRNTAKITRTQRPIQADGFGSSVGNEQLTAKFGNVKAVKVTAPPPS 257          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|635361313|emb|CCI49697.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 142.124 bits (357), Expect = 5.176e-35
Identity = 102/263 (38.78%), Postives = 141/263 (53.61%), Query Frame = 0
Query:   22 MFAFLSQG----PLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVY--FNAPD-AGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE-PEPAAGSL--AAVHNPDVIRDYSNLPPPPTASSYSAPP------PPASLHGMSSSGTH--LPQASKPAPKVDRPIVADGFHCSVGNPELAAKYGHIKTDIPMAPPPSAS 266
            MF+FL+       LG++LAP  +P +QLH +IEE   +K  +LL +      NA + AG    LP+HTA   G   MI+ L++ G D  +   R GN TLH AA     E VK+L+  G + + RN  RQTAY+VA+   +RQFLLPLQ R E P  AA  L      + D +     + PPPT   Y+         PP   + + ++ +H  +P+ +    +  RPI ADGF  SVGN  L AK+G++K     APPPS S
Sbjct:    1 MFSFLADKLNVKNLGDILAPTSSPEEQLHASIEEGIDEKFMRLLDDSQLDLINALNPAGY---LPVHTAAYHGRIRMIECLLDRGVDVNAIGPR-GNTTLHLAASQSHEEAVKYLINRGANPAIRNNTRQTAYEVAKGDYIRQFLLPLQFRHEDPNEAAAYLPPGITPSSDPMERKPEIAPPPTDLGYNTNSGQVPNAPPMQSNNLYAAPSHCAIPRNTAKITRTQRPIQADGFGSSVGNEALTAKFGNVKAVKVTAPPPSNS 259          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|298707864|emb|CBJ30270.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.724 bits (330), Expect = 3.887e-33
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 0
Query:   22 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRA 166
            MF FL QG +GE++APV++   QL  AI+  + DK  +LL+ +GV  N A D G     P+H ACQ GN  ++ +L+E+GAD  +A D+ GN  LH A+KGG  + VK L+  G  V +RN++R TAYDVA  H++RQFLLPLQL+ 
Sbjct:    1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRG---VRPMHMACQTGNNHLVQRLLELGADIITA-DKAGNTPLHYASKGGHTDMVKMLVGQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLKV 143          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|1173942413|gb|OQR91424.1| (hypothetical protein ACHHYP_04714 [Achlya hypogyna])

HSP 1 Score: 135.191 bits (339), Expect = 9.727e-32
Identity = 104/264 (39.39%), Postives = 136/264 (51.52%), Query Frame = 0
Query:   22 MFAFLSQ----GPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQE-GVYFNA--PDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAEP--EPAAG-------SLAAVHNPDVIRDYSNLPPPPTASS-YSAPPPPASLHGMSSSGTHLPQASKPAP----------------KVDRPIVADGFHCSVGNPELAAKYGH 252
            MF++LS+      LGEL+AP   P QQLHQAI +   +K   +L +  V  NA  P+     + PIH+A  AG   + + L+E GAD  +   R GN  LH A   G  E  K L++ G +V++RN   +T+YDVA+   +RQFLLPLQ + E   E AA         L   H+P + +  + + PPPTA   Y A PP AS         H P A+  AP                 V RPI ADGF  SVGNPEL AKYG+
Sbjct:    1 MFSYLSETLNIKSLGELIAPTLTPEQQLHQAISDGLVEKVRHMLDDVKVSVNARTPEG----SYPIHSAAYAGRIDIFNMLLERGADITTLGPR-GNTPLHLACAQGHYELAKLLISRGANVAQRNQSGRTSYDVAKGDSLRQFLLPLQFQHEDPSERAAAVQQAHQMGLTGFHDPTIPQ--AAIAPPPTAGMPYGAGPPTASSGYQEDPMAHNPHAALYAPPTHSAIPRGAAARRDPTVYRPIQADGFGTSVGNPELTAKYGN 257          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|669144480|ref|XP_008607802.1| (hypothetical protein SDRG_03931 [Saprolegnia diclina VS20] >gi|530740736|gb|EQC38978.1| hypothetical protein SDRG_03931 [Saprolegnia diclina VS20])

HSP 1 Score: 128.642 bits (322), Expect = 1.403e-29
Identity = 101/268 (37.69%), Postives = 132/268 (49.25%), Query Frame = 0
Query:   22 MFAFLSQ----GPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQE-GVYFNA--PDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE--PEPAAG-------SLAAVHNPDVIRDYSNLPPPPTASSYSAPPPPASLHGMSSSGTHLPQASKP---------------------APKVDRPIVADGFHCSVGNPELAAKYGH 252
            MF++LS+      LGEL+AP   P QQLHQAI +   +K   LL +  V  NA  P+     + PIH+A  AG   + + L+E GAD  +   R GN  LH A   G  E  K L+  G +V++RN   +T+YDVA+   +RQFLLPLQ + E   E AA         L   H+P + +  + + PPPT+  Y + PP      M       P AS P                      PKV RPI ADGF  SVGN EL A YG+
Sbjct:    1 MFSYLSETLNIKNLGELIAPTLTPEQQLHQAISDGLPEKVRHLLDDVKVSVNARTPEG----SYPIHSAAYAGRVDIFNLLLERGADITTLGPR-GNTPLHLACAQGHFELAKLLVGRGANVAQRNQSGRTSYDVAKGDSLRQFLLPLQFQHEDPTERAAAVQQAHQMGLTGFHDPTMPQ--AAIAPPPTSIPYGSAPP------MGGGYQDAPMASDPHAALYAPPTHSAIPRGAAARRDPKVTRPIAADGFGSSVGNAELTAFYGN 255          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|1173949248|gb|OQR97308.1| (hypothetical protein THRCLA_21955 [Thraustotheca clavata])

HSP 1 Score: 129.028 bits (323), Expect = 1.675e-29
Identity = 98/256 (38.28%), Postives = 135/256 (52.73%), Query Frame = 0
Query:   22 MFAFLSQG----PLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE--PEPAAG-------SLAAVHNPDVIRDYSNLPP-------PPTASSYSAPPPPASLH-GMSSSGTH--LPQ--ASKPAPKVDRPIVADGFHCSVGNPELAAKYGH 252
            MF++LS+      +GE++AP   P QQLHQAI +   DK   LL + V  +        + PIHTA  AG   +   L+E GAD  +   R GN  LH A   G LE  K L+A G +V++RN   +T+YDVA+   +RQ+LLPLQ + E   E AA         L   H+P + +     PP       PPT ++Y   P   + H  + +  TH  +P+  A++  P V RPI ADGF  SVGN EL AK+G+
Sbjct:    1 MFSYLSEALNIKSIGEMIAPTLTPEQQLHQAISDGLIDKVRHLLDD-VKVSVTARTPEGSYPIHTAAYAGQIEIFMLLLERGADISTLGPR-GNTPLHLACAQGHLELAKLLIARGANVAQRNQSNRTSYDVAKGDTLRQYLLPLQFQHEDPTERAAAVQQAHQLGLTGFHDPTLPQAPIAPPPMAGVPYGPPTTATYQEDPLANNPHAALYAPPTHNAIPRGAAARRDPTVFRPIQADGFGSSVGNAELTAKFGN 254          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|813165000|ref|XP_012203560.1| (hypothetical protein SPRG_09050 [Saprolegnia parasitica CBS 223.65] >gi|641531691|gb|KDO25751.1| hypothetical protein SPRG_09050 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 128.257 bits (321), Expect = 1.699e-29
Identity = 103/259 (39.77%), Postives = 134/259 (51.74%), Query Frame = 0
Query:   22 MFAFLSQ----GPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQE-GVYFNA--PDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE--PEPAAG-------SLAAVHNPDVIRDYSNLPP---PPTASSYSAPP----PPASL-----HGMSSSGTHLPQASKPAPKVDRPIVADGFHCSVGNPELAAKYGH 252
            MF++LS+      LGEL+AP   P QQLHQAI +   +K   LL +  V  NA  P+     + PIH+A  AG   + + L+E GAD  +   R GN  LH A   G  E  K L++ G +V++RN   +T+YDVA+   +RQFLLPLQ + E   E AA         L   H+P + +     PP   PP    Y   P    P A+L     H     GT    A++  PKV RPIVADGF  SVGN EL A YG+
Sbjct:    1 MFSYLSETLNIKNLGELIAPTLTPEQQLHQAISDGLPEKVRHLLDDVKVSVNARTPEG----SYPIHSAAYAGRVDIFNLLLERGADITTLGPR-GNTPLHLACAQGHFELAKLLVSRGANVAQRNQSARTSYDVAKGDSLRQFLLPLQFQHEDPTERAAAVQQAHQMGLTGFHDPTMPQAAIAPPPTSMPPMGGGYQDAPMANDPHAALYAPPTHSAIPRGT----AARRDPKVTRPIVADGFGSSVGNAELTAFYGN 250          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|675165561|ref|XP_008891665.1| (hypothetical protein PPTG_02352 [Phytophthora parasitica INRA-310] >gi|567993262|gb|ETL43444.1| hypothetical protein L916_06040 [Phytophthora parasitica] >gi|568107780|gb|ETN22404.1| hypothetical protein PPTG_02352 [Phytophthora parasitica INRA-310])

HSP 1 Score: 128.257 bits (321), Expect = 1.984e-29
Identity = 99/255 (38.82%), Postives = 133/255 (52.16%), Query Frame = 0
Query:   22 MFAFLSQG----PLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGDA--LPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE-PEPAAGSLAAVHNPDV--IRDYSNLPPPPTASSYSAPP-PPASL-------HGMSSSGTH--LPQA--SKPA-PKVDRPIVADGFHCSVGNPELAAKYGHIK 254
            MF + ++      LGELLAP   P Q+ H AIE+  HDK  ++L E    N     + DA  LPIHTA   G    I+ L+    D  +   R  N  LH AA   + E VKFL+ HG + + RN   +T YDVA+   +RQ+LLPLQ R E P  AA  L     P V  +     + PPP +  Y+AP  PP  +       + + ++ TH  +P+   S+ A PK  RPI ADGF  SVGN EL AK+G+ +
Sbjct:    1 MFGYFAEKLNVKNLGELLAPTLTPEQEFHAAIEQGLHDKFVRMLDE---LNIDPNAKNDAGNLPIHTAAYYGRVDFIELLLTRNVDVNALCSRE-NSPLHYAAAQSRDEAVKFLVNHGANPALRNRSGRTPYDVAKGDNIRQYLLPLQFRHEDPAQAATMLPPGITPSVDPMAPRPVIAPPPLSGDYAAPQGPPIGMPQQQTPQNNLYAAATHSAIPRGGPSRVARPKDYRPIQADGFGSSVGNEELTAKFGNKR 251          
BLAST of EWM25372.1 vs. NCBI_GenBank
Match: gi|570989697|gb|ETP47856.1| (hypothetical protein F442_06267 [Phytophthora parasitica P10297])

HSP 1 Score: 128.257 bits (321), Expect = 2.004e-29
Identity = 99/255 (38.82%), Postives = 133/255 (52.16%), Query Frame = 0
Query:   22 MFAFLSQG----PLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGDA--LPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE-PEPAAGSLAAVHNPDV--IRDYSNLPPPPTASSYSAPP-PPASL-------HGMSSSGTH--LPQA--SKPA-PKVDRPIVADGFHCSVGNPELAAKYGHIK 254
            MF + ++      LGELLAP   P Q+ H AIE+  HDK  ++L E    N     + DA  LPIHTA   G    I+ L+    D  +   R  N  LH AA   + E VKFL+ HG + + RN   +T YDVA+   +RQ+LLPLQ R E P  AA  L     P V  +     + PPP +  Y+AP  PP  +       + + ++ TH  +P+   S+ A PK  RPI ADGF  SVGN EL AK+G+ +
Sbjct:    1 MFGYFAEKLNVKNLGELLAPTLTPEQEFHAAIEQGLHDKFVRMLDE---LNIDPNAKNDAGNLPIHTAAYYGRVDFIELLLTRNVDVNALCSRE-NSPLHYAAAQSRDEAVKFLVNHGANPALRNRSGRTPYDVAKGDNIRQYLLPLQFRHEDPAQAATMLPPGITPSVDPMAPRPVIAPPPLSGDYAAPQGPPIGMPQQQTPQNNLYAAATHSAIPRGGPSRVARPKDYRPIQADGFGSSVGNEELTAKFGNKR 251          
The following BLAST results are available for this feature:
BLAST of EWM25372.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107133|gb|EWM25372.1|0.000e+0100.00serine threonine-protein phosphatase 6 regulatory ... [more]
gi|325189089|emb|CCA23616.1|1.195e-3639.38conserved hypothetical protein [Albugo laibachii N... [more]
gi|635361313|emb|CCI49697.1|5.176e-3538.78unnamed protein product [Albugo candida][more]
gi|298707864|emb|CBJ30270.1|3.887e-3348.30conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173942413|gb|OQR91424.1|9.727e-3239.39hypothetical protein ACHHYP_04714 [Achlya hypogyna... [more]
gi|669144480|ref|XP_008607802.1|1.403e-2937.69hypothetical protein SDRG_03931 [Saprolegnia dicli... [more]
gi|1173949248|gb|OQR97308.1|1.675e-2938.28hypothetical protein THRCLA_21955 [Thraustotheca c... [more]
gi|813165000|ref|XP_012203560.1|1.699e-2939.77hypothetical protein SPRG_09050 [Saprolegnia paras... [more]
gi|675165561|ref|XP_008891665.1|1.984e-2938.82hypothetical protein PPTG_02352 [Phytophthora para... [more]
gi|570989697|gb|ETP47856.1|2.004e-2938.82hypothetical protein F442_06267 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5314rna5314Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications