rna5311, rna5311 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5311
Unique Name	rna5311
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1038
Alignment location	CM002465.1:682126..683633 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100005g106.6761.mrna
Orig protein id	gnl\|cribi\|Naga_100005g106.6761
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:682126..683633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g106	gene5131	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5311	rna5311-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25467.1	cds5298	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:682126..683633+
coding sequence from alignment at CM002465.1:682126..683633+

mRNA sequence

>rna5311 ID=rna5311|Name=rna5311|organism=Nannochloropsis gaditana|type=mRNA|length=1038bp
ATGTACGCGCACCAATTACGGATTGCGTCCCGCGTTGGCCTAGGGCTGGG
GGTAGCAGCTCTGGTGAGGAGCAACAGCAACAGCAACAGCACCACAATCT
CCAAGCCCACGCGCTGTGAGACCGCGCAGCACCAGCAGCAGCTCCGACGA
CCATCAAGTCAACAACAAACATATTTTGACCACGCATTAGACGACCGCGA
AAAGGACACGGCGGGCTTTGTGGGAGTTTTTCTGGACGCGGCCTCAGTGA
AGCGCGTGCAAAATGCCGTGGGGGGCTCCCTGGGCCGAAACGCTCATGCC
TTGGTCCAGTTACATCCTGAACCTGGGGTAAAGCGGTCATTTGCCCCCTT
ATTTGGCAGCAAGGCCGAGGTAGTGGTAAGAGGCGTGGCTGAAGACGTGT
CCACACGCCAAAAGGTTATTATCGTCGATGTTAACGTGGGTGGAGGTCGC
CTGTACCCCTCCAGAAACGGCCACGGGAGCATTCCCACAATAGCCATGGC
CTCGGAGAGCTGGGACGATGACGTGGCGGATCTATTGGGCGTGGATCTGG
CGCGTCGGCTCCTAGAGAACGGAATATTGCACGCAAAGGGATCCTGGGAC
GGCGTGCTCCCAGGTCAACTTTTGGACGGGATCAAATATCCGCCTACGCG
AGCCGTCTTCCAGGAGCTCGACGCACCCGTCGCTTGTGAAGGCACGATCT
GCGCGTCCACAGACTACGATAAGCAGTCGGATAAGTGCATAATTCGAGCC
GATACAGCATCGGGAATGGCGGAAAAAAGCCAGGACGAGGCGGAGGAGGT
AGAAGGCGAATGCCCCCTGTGCACGTACATGATGAACAGTCCCTGCAAGG
ATGTCTTCGTGGTGTTCAAGTCCTGCATCGATAAAGCTGGCAGCACTGAC
GAGCGAGAGGATCTGACACGCTGTGAAGCATCGGCGGCCTTTGTCCATGA
GTGTATCCAAAATTTTGGACTTTTCCGAGAGCATCTGCAGGAAGAGGCTG
AGGAGGCAGCTGAGATATCAGATGAGGGGAAGGCGTGA

protein sequence of rna5311

>rna5311-protein ID=rna5311-protein|Name=rna5311|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MRHFYRYRICGVMLNARNKSSLPSCHVRLTIVGFRCKCVVYGREVGKERK
RIMNFGLFLFAILPFPACAFFTAPAVTQSRVGSTVLRAIHEVHDFSTRQQ
HLSSTFQSLVLAGLGTTAGIALSTAPANAATKVEYLKEPTPEFEEMQKRA
MAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVG
IKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDL
TNPL

mRNA from alignment at CM002465.1:682126..683633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5311 ID=rna5311|Name=rna5311|organism=Nannochloropsis gaditana|type=mRNA|length=1508bp|location=Sequence derived from alignment at CM002465.1:682126..683633+ (Nannochloropsis gaditana)
ATGAGACATTTTTACAGGTACAGGATTTGTGGGGTAATGCTTAATGCACG
GAATAAGTCCTCACTGCCGAGCTGCGTAAGACGTGGCGAAAAAAGATGGG
ACCCTTGAAGAGGGCGTGTAGATAGCATGTGAGATTGACTATTGTAGGGT
TTCGGTGTAAATGTGTGGTGTATGGTAGGGAGGTAGGCAAAGAACGGAAA
CGGGTTTGGACAGGATGTCCGAGCCCGCCACGTACTGACGAACAGCTCTG
CTGCTATTTTTGTTGTCTTTTTGCTTGGTGGTCCTTTGTAGGGATGTACA
GGGCTATTTGTGTATGCATCGGTCCTCTATACTTCATTGCTGTGACACAA
GTATATTTCACCAAGGAGAGCCCATCTATCTGTCTCATGTGGGCAGCTCA
GCTCTAGCCTCCTTGGTTGCTCGCTGTCACACCGTGCCACCCACAACGTG
ATGGCTTGAACATAGTCAACGCTGGTAGACAAACGCTCTGCGCATAAAGA
TCTCATTTATCTCTGTTCCTATATCACCGTAATATCCATTCAAACATCTA
TGTGCATGCCTACGTGTTGCCTGTCGGGGAGGCCAGATCATGAATTTcgg
cctctttctcttcgcgATACTGCCCTTTCCGGCTTGCGCCTTCTTCACAG
CCCCCGCTGTGACGCAAAGCCGAGTAGGTTCCACGGTTCTCCGAGCAATT
CATGAGGTACATGACTTCTCCACTCGACAGCAGCATCTAAGTAGCACCTT
TCAATCTTTAGTCTTGGCTGGCTTGGGTACCACAGCCGGGATTGCTCTGA
GCACGGCGCCGGCGAATGCGGCAACCAAGGTCGAATACTTGAAAGAGCCT
ACTCCTGAATTCGAGGTAAGCTTATAGGGGCCGTAGTGCTTAATTCTGCT
TTCTGAAAGCAACTTCAGGAATTCGGAGGCGCTCTTGTCGGGCAATTACT
TCAGTCGCTGCTATCGGCATGGTTCCGCTTGAGGTCCTTTTAGAGCACGC
AACTTCGTTTTTTCAACTATGTACAAGGCGTCGCAAATGCCCCTGTCCTC
ACGCAACCGATTTTATCTTCCCTAAGGAAATGCAAAAACGCGCGATGGCA
TTCGAGAGAGCGGCgcttgaaaagaagaaggtaTGGAAAGACAAATATGC
GGTGTTGCCGCAGGCCAAGACAGAGCAAGAGCTTGTCGCAGCTTTGGATG
GGCTCACAAAGTTTGTTCTTGAAGAACGCGGTCTTCCTGTTGGTATCAAA
ATGCAGGTACGCACAGCTTTAATCGAAAGGACTGCTAGAAATCacaaggg
aagaggcgccCTTGGATCCATGGACTCACGCCTAGCATGTCTTTATCACG
GACAGACACTAGTGAGCGATATTCGCAAAGtgaagagggcagggaaagaT
GCGAAAATCTGGAATAAAGAAGCTGAGATTTCCTACGAGAAATTGATTTA
CGCAATCAATTACCAGCAAAGCCCCAACACAAGTCGAGACTTGACCAACC
CTCTTTGA

Coding sequence (CDS) from alignment at CM002465.1:682126..683633+

>rna5311 ID=rna5311|Name=rna5311|organism=Nannochloropsis gaditana|type=CDS|length=3825bp|location=Sequence derived from alignment at CM002465.1:682126..683633+ (Nannochloropsis gaditana)
ATGAGACATTTTTACAGGTACAGGATTTGTGGGGTAATGCTTAATGCACG
GAATAAGTCCTCACTGCCGAGCTGCCATGTGAGATTGACTATTGTAGGGT
TTCGGTGTAAATGTGTGGTGTATGGTAGGGAGGTAGGCAAAGAACGGAAA
CGGATCATGAATTTcggcctctttctcttcgcgATACTGCCCTTTCCGGC
TTGCGCCTTCTTCACAGCCCCCGCTGTGACGCAAAGCCGAGTAGGTTCCA
CGGTTCTCCGAGCAATTCATGAGGTACATGACTTCTCCACTCGACAGCAG
CATCTAAGTAGCACCTTTCAATCTTTAGTCTTGGCTGGCTTGGGTACCAC
AGCCGGGATTGCTCTGAGCACGGCGCCGGCGAATGCGGCAACCAAGGTCG
AATACTTGAAAGAGCCTACTCCTGAATTCGAGGAAATGCAAAAACGCGCG
ATGGCATTCGAGAGAGCGGCgcttgaaaagaagaaggtaTGGAAAGACAA
ATATGCGGTGTTGCCGCAGGCCAAGACAGAGCAAGAGCTTGTCGCAGCTT
TGGATGGGCTCACAAAGTTTGTTCTTGAAGAACGCGGTCTTCCTGTTGGT
ATCAAAATGCAGACACTAGTGAGCGATATTCGCAAAGtgaagagggcagg
gaaagaTGCGAAAATCTGGAATAAAGAAGCTGAGATTTCCTACGAGAAAT
TGATTTACGCAATCAATTACCAGCAAAGCCCCAACACAAGTCGAGACTTG
ACCAACCCTCTTTGAATGAGACATTTTTACAGGTACAGGATTTGTGGGGT
AATGCTTAATGCACGGAATAAGTCCTCACTGCCGAGCTGCCATGTGAGAT
TGACTATTGTAGGGTTTCGGTGTAAATGTGTGGTGTATGGTAGGGAGGTA
GGCAAAGAACGGAAACGGATCATGAATTTcggcctctttctcttcgcgAT
ACTGCCCTTTCCGGCTTGCGCCTTCTTCACAGCCCCCGCTGTGACGCAAA
GCCGAGTAGGTTCCACGGTTCTCCGAGCAATTCATGAGGTACATGACTTC
TCCACTCGACAGCAGCATCTAAGTAGCACCTTTCAATCTTTAGTCTTGGC
TGGCTTGGGTACCACAGCCGGGATTGCTCTGAGCACGGCGCCGGCGAATG
CGGCAACCAAGGTCGAATACTTGAAAGAGCCTACTCCTGAATTCGAGGAA
ATGCAAAAACGCGCGATGGCATTCGAGAGAGCGGCgcttgaaaagaagaa
ggtaTGGAAAGACAAATATGCGGTGTTGCCGCAGGCCAAGACAGAGCAAG
AGCTTGTCGCAGCTTTGGATGGGCTCACAAAGTTTGTTCTTGAAGAACGC
GGTCTTCCTGTTGGTATCAAAATGCAGACACTAGTGAGCGATATTCGCAA
AGtgaagagggcagggaaagaTGCGAAAATCTGGAATAAAGAAGCTGAGA
TTTCCTACGAGAAATTGATTTACGCAATCAATTACCAGCAAAGCCCCAAC
ACAAGTCGAGACTTGACCAACCCTCTTTGAATGAGACATTTTTACAGGTA
CAGGATTTGTGGGGTAATGCTTAATGCACGGAATAAGTCCTCACTGCCGA
GCTGCCATGTGAGATTGACTATTGTAGGGTTTCGGTGTAAATGTGTGGTG
TATGGTAGGGAGGTAGGCAAAGAACGGAAACGGATCATGAATTTcggcct
ctttctcttcgcgATACTGCCCTTTCCGGCTTGCGCCTTCTTCACAGCCC
CCGCTGTGACGCAAAGCCGAGTAGGTTCCACGGTTCTCCGAGCAATTCAT
GAGGTACATGACTTCTCCACTCGACAGCAGCATCTAAGTAGCACCTTTCA
ATCTTTAGTCTTGGCTGGCTTGGGTACCACAGCCGGGATTGCTCTGAGCA
CGGCGCCGGCGAATGCGGCAACCAAGGTCGAATACTTGAAAGAGCCTACT
CCTGAATTCGAGGAAATGCAAAAACGCGCGATGGCATTCGAGAGAGCGGC
gcttgaaaagaagaaggtaTGGAAAGACAAATATGCGGTGTTGCCGCAGG
CCAAGACAGAGCAAGAGCTTGTCGCAGCTTTGGATGGGCTCACAAAGTTT
GTTCTTGAAGAACGCGGTCTTCCTGTTGGTATCAAAATGCAGACACTAGT
GAGCGATATTCGCAAAGtgaagagggcagggaaagaTGCGAAAATCTGGA
ATAAAGAAGCTGAGATTTCCTACGAGAAATTGATTTACGCAATCAATTAC
CAGCAAAGCCCCAACACAAGTCGAGACTTGACCAACCCTCTTTGAATGAG
ACATTTTTACAGGTACAGGATTTGTGGGGTAATGCTTAATGCACGGAATA
AGTCCTCACTGCCGAGCTGCCATGTGAGATTGACTATTGTAGGGTTTCGG
TGTAAATGTGTGGTGTATGGTAGGGAGGTAGGCAAAGAACGGAAACGGAT
CATGAATTTcggcctctttctcttcgcgATACTGCCCTTTCCGGCTTGCG
CCTTCTTCACAGCCCCCGCTGTGACGCAAAGCCGAGTAGGTTCCACGGTT
CTCCGAGCAATTCATGAGGTACATGACTTCTCCACTCGACAGCAGCATCT
AAGTAGCACCTTTCAATCTTTAGTCTTGGCTGGCTTGGGTACCACAGCCG
GGATTGCTCTGAGCACGGCGCCGGCGAATGCGGCAACCAAGGTCGAATAC
TTGAAAGAGCCTACTCCTGAATTCGAGGAAATGCAAAAACGCGCGATGGC
ATTCGAGAGAGCGGCgcttgaaaagaagaaggtaTGGAAAGACAAATATG
CGGTGTTGCCGCAGGCCAAGACAGAGCAAGAGCTTGTCGCAGCTTTGGAT
GGGCTCACAAAGTTTGTTCTTGAAGAACGCGGTCTTCCTGTTGGTATCAA
AATGCAGACACTAGTGAGCGATATTCGCAAAGtgaagagggcagggaaag
aTGCGAAAATCTGGAATAAAGAAGCTGAGATTTCCTACGAGAAATTGATT
TACGCAATCAATTACCAGCAAAGCCCCAACACAAGTCGAGACTTGACCAA
CCCTCTTTGAATGAGACATTTTTACAGGTACAGGATTTGTGGGGTAATGC
TTAATGCACGGAATAAGTCCTCACTGCCGAGCTGCCATGTGAGATTGACT
ATTGTAGGGTTTCGGTGTAAATGTGTGGTGTATGGTAGGGAGGTAGGCAA
AGAACGGAAACGGATCATGAATTTcggcctctttctcttcgcgATACTGC
CCTTTCCGGCTTGCGCCTTCTTCACAGCCCCCGCTGTGACGCAAAGCCGA
GTAGGTTCCACGGTTCTCCGAGCAATTCATGAGGTACATGACTTCTCCAC
TCGACAGCAGCATCTAAGTAGCACCTTTCAATCTTTAGTCTTGGCTGGCT
TGGGTACCACAGCCGGGATTGCTCTGAGCACGGCGCCGGCGAATGCGGCA
ACCAAGGTCGAATACTTGAAAGAGCCTACTCCTGAATTCGAGGAAATGCA
AAAACGCGCGATGGCATTCGAGAGAGCGGCgcttgaaaagaagaaggtaT
GGAAAGACAAATATGCGGTGTTGCCGCAGGCCAAGACAGAGCAAGAGCTT
GTCGCAGCTTTGGATGGGCTCACAAAGTTTGTTCTTGAAGAACGCGGTCT
TCCTGTTGGTATCAAAATGCAGACACTAGTGAGCGATATTCGCAAAGtga
agagggcagggaaagaTGCGAAAATCTGGAATAAAGAAGCTGAGATTTCC
TACGAGAAATTGATTTACGCAATCAATTACCAGCAAAGCCCCAACACAAG
TCGAGACTTGACCAACCCTCTTTGA

Synonyms

Publications