EWM25467.1, cds5298 (CDS) Nannochloropsis gaditana

Overview
NameEWM25467.1
Unique Namecds5298
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:682126..682200 +
Alignment locationCM002465.1:682251..682328 +
Alignment locationCM002465.1:682712..682990 +
Alignment locationCM002465.1:683202..683381 +
Alignment locationCM002465.1:683481..683633 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25467.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g106.6761.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:682126..682200 +
CM002465.1supercontigCM002465.1:682251..682328 +
CM002465.1supercontigCM002465.1:682712..682990 +
CM002465.1supercontigCM002465.1:683202..683381 +
CM002465.1supercontigCM002465.1:683481..683633 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|585107228|gb|EWM25467.1| (hypothetical protein Naga_100005g106 [Nannochloropsis gaditana])

HSP 1 Score: 529.25 bits (1362), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MRHFYRYRICGVMLNARNKSSLPSCHVRLTIVGFRCKCVVYGREVGKERKRIMNFGLFLFAILPFPACAFFTAPAVTQSRVGSTVLRAIHEVHDFSTRQQHLSSTFQSLVLAGLGTTAGIALSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 254
            MRHFYRYRICGVMLNARNKSSLPSCHVRLTIVGFRCKCVVYGREVGKERKRIMNFGLFLFAILPFPACAFFTAPAVTQSRVGSTVLRAIHEVHDFSTRQQHLSSTFQSLVLAGLGTTAGIALSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL
Sbjct:    1 MRHFYRYRICGVMLNARNKSSLPSCHVRLTIVGFRCKCVVYGREVGKERKRIMNFGLFLFAILPFPACAFFTAPAVTQSRVGSTVLRAIHEVHDFSTRQQHLSSTFQSLVLAGLGTTAGIALSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 254          
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|553178646|ref|XP_005852586.1| (hypothetical protein NGA_0714200 [Nannochloropsis gaditana CCMP526] >gi|422295950|gb|EKU23249.1| hypothetical protein NGA_0714200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 272.322 bits (695), Expect = 1.663e-90
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0
Query:  122 LSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 254
            +STAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL
Sbjct:    1 MSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 133          
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|219128929|ref|XP_002184653.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403762|gb|EEC43712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.6557 bits (213), Expect = 5.608e-17
Identity = 50/142 (35.21%), Postives = 83/142 (58.45%), Query Frame = 0
Query:  119 GIALSTAP---ANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWK---DKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 254
            G   +T+P   A    + ++L+EPT +F+  +++A  F+RAAL++K+ ++   D++   P  +T   L + LD L + V +  GLP GI  +  V  IR+  R  +  + W  + EI+Y+ L+  I YQQSPNT RD+ NP+
Sbjct:   74 GNVEATSPQSYAAPGARPKWLEEPTEDFKRNEQKATEFKRAALQRKQEFQAILDRFQEEPNDETI--LASDLDDLRRRVKQNGGLPQGISKEDTVKQIRR--RKARKPRYWPTQVEIAYQDLVSEILYQQSPNTDRDMDNPM 211          
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|224010319|ref|XP_002294117.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970134|gb|EED88472.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 84.7297 bits (208), Expect = 2.494e-16
Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = 0
Query:  124 TAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVL-PQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 254
            ++PA+A     YL EPT EF+E +++ M F +  L  K  +    A L  ++ TE+ELV  L  L + V++  GLP+GIK +    D+ KV R  K    W    EI+Y+KL   I YQQSPNT +DL NPL
Sbjct:   78 SSPASALET--YLTEPTEEFKESERQRMEFRKKQLLLKGGFVKVLARLTSESNTEEELVRDLSELKELVIQTGGLPLGIKKE----DMYKVIRGKKAKGNWPTNVEIAYQKLKSEIAYQQSPNTEKDLENPL 203          
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|1072228656|gb|OEU13391.1| (hypothetical protein FRACYDRAFT_269797 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.0333 bits (201), Expect = 2.101e-15
Identity = 70/203 (34.48%), Postives = 98/203 (48.28%), Query Frame = 0
Query:   59 LFAILPFPACAFFTAPAVTQSRVGSTVLRAIHEVHDFSTRQQHLSSTFQSLVLAGLGTTAGIA--LSTAP---ANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWK---DKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNP 253
            L A++P  +   FTAP  T S   ST  R+   V         LS+  + ++   + + AGIA     AP   A A  +  YL EPT EF+E + + MAF+R  L  KK +    D +  L +A     LV  L  L   +++  GLP+GIK   L   IR  K  G     W   AE++Y+ LI  I +QQSPN  ++  NP
Sbjct:   10 LLAVMP-SSVYSFTAPTNTNS-CQST--RSCSHVS--------LSANRREILETAVASAAGIASFFVLAPPQEAMAEARPMYLSEPTDEFKENEAKGMAFKREQLAVKKEFNAALDTF--LNEANDSDALVKDLKDLQNLIVKAAGLPLGIKKDDLFKQIRSKKGKG----FWPVPAEVAYQSLIGEIRFQQSPNLDKENGNP 194          
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|397640667|gb|EJK74246.1| (hypothetical protein THAOC_04086 [Thalassiosira oceanica])

HSP 1 Score: 81.6481 bits (200), Expect = 2.286e-15
Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 0
Query:   52 IMNFGLFLFAILPFPACAFFTAPAVTQSRVGSTVLRAIHEVHDFSTRQQHLSSTFQSLVLAGLGTTAGIALSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLP-QAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 254
            +M   L + +I   P  AF  AP+       +T L A  +      R+  ++ST  +       ++  +AL T          YL EPT EF+E +++ + F R  L  K  +    A L  ++ TE++L+  L+ L   V++  GLP+GIK +    ++ KV R+ K    W    EI+Y+ L   I YQQSPNT +DL NPL
Sbjct:    1 MMKSTLVILSIAAAPCTAF--APSSPAPHRAATDLSATTD------RRAMIASTLTAAASVAASSSPALALET----------YLTEPTEEFKESERQRLEFRRKQLALKGEFVKVIARLTTESTTEEQLIGDLEELRGLVVKTGGLPIGIKKE----EMYKVIRSKKAKGFWPTNVEIAYQGLKSEIRYQQSPNTEKDLENPL 182          
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|298708974|emb|CBJ30927.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.9442 bits (180), Expect = 1.715e-12
Identity = 47/144 (32.64%), Postives = 76/144 (52.78%), Query Frame = 0
Query:   96 STRQQHLSSTFQSLVLAGLGTTAGIALSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAIN 239
            +TR+  LS      + AG+    G+ L+T  A A  K EYLKEPT EF+ M+ R   F  A    K+ +  K       +T++E V+ L+ ++  V++  GLP  +++  L+   R+ K A KD+  W+   +I+YE L+   N
Sbjct:   48 ATRRAFLSDQLVGAIGAGV---LGLGLATERATAYEK-EYLKEPTAEFKAMEARQADFSAAQRAYKQEFVKKLDAFLAVETDEEAVSTLNAMSNTVIQRGGLPESVRINDLLKTCRRKKAAMKDSGKWSTPVQIAYETLVQTTN 187          
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|1210521592|dbj|GAX19582.1| (hypothetical protein FisN_19Hh160 [Fistulifera solaris])

HSP 1 Score: 65.0846 bits (157), Expect = 3.559e-9
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 0
Query:  129 AATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQ-----AKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTS 247
            A  +  YL EPT EF + +K+A  F+R   E+ KV K ++  L Q        E  L   LD L + V +  GLP+GI  + +V  +R+ K      K W    EI+Y+ L+  I YQQSPNT 
Sbjct:   84 APKRPTYLAEPTEEFRQNEKKASDFKR---EQLKV-KGQFMALLQKLQDDPNDETTLANDLDELRRLVRKGGGLPLGITKEEVVKQVRRRKAR----KFWPVNVEIAYQDLLAEIAYQQSPNTD 199          
BLAST of EWM25467.1 vs. NCBI_GenBank
Match: gi|1210531726|dbj|GAX09693.1| (hypothetical protein FisN_19Lh160 [Fistulifera solaris])

HSP 1 Score: 64.6994 bits (156), Expect = 6.057e-9
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 0
Query:  129 AATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQ-----AKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTS 247
            A  +  YL EPT EF + +K+A  F+R   E+ KV K ++  L Q        E  L   LD L + V +  GLP+GI    +V  +R+ K      K W    EI+Y+ L+  I YQQSPNT 
Sbjct:   85 APKRPTYLAEPTEEFRQNEKKASDFKR---EQLKV-KGQFTALLQKLQDDPNDETTLANDLDELRRLVRKGGGLPLGITKDEVVKQVRRRKAR----KFWPVNVEIAYQDLLAEIAYQQSPNTD 200          
The following BLAST results are available for this feature:
BLAST of EWM25467.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585107228|gb|EWM25467.1|0.000e+0100.00hypothetical protein Naga_100005g106 [Nannochlorop... [more]
gi|553178646|ref|XP_005852586.1|1.663e-9099.25hypothetical protein NGA_0714200 [Nannochloropsis ... [more]
gi|219128929|ref|XP_002184653.1|5.608e-1735.21predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224010319|ref|XP_002294117.1|2.494e-1641.67predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072228656|gb|OEU13391.1|2.101e-1534.48hypothetical protein FRACYDRAFT_269797 [Fragilario... [more]
gi|397640667|gb|EJK74246.1|2.286e-1531.86hypothetical protein THAOC_04086 [Thalassiosira oc... [more]
gi|298708974|emb|CBJ30927.1|1.715e-1232.64conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210521592|dbj|GAX19582.1|3.559e-937.10hypothetical protein FisN_19Hh160 [Fistulifera sol... [more]
gi|1210531726|dbj|GAX09693.1|6.057e-937.10hypothetical protein FisN_19Lh160 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5311rna5311Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications