rna5310, rna5310 (mRNA) Nannochloropsis gaditana

Overview
Namerna5310
Unique Namerna5310
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1263
Alignment locationCM002465.1:680879..682008 +

Link to JBrowse

Properties
Property NameValue
ProductGCK domain-containing protein
Orig transcript idgnl|cribi|Naga_100005g105.6689.mrna
Orig protein idgnl|cribi|Naga_100005g105.6689
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:680879..682008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g105gene5130Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5310rna5310-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25395.1cds5297Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5310 ID=rna5310|Name=rna5310|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp
ATGTTCATACAATATTTCACCTCTTCTGACACCGCTTTGACCCGCTTCTT
CTCTGCGCCTGCGCCTTGCCGATCGATAGTCCGCGAGAGGGCTTCCGCCC
CGGAGCCTGAGGCCTCCCTGCTCGCCTCGCGTCCCCCCCCCACCGCCCCG
CCTGGCCCCTCGGAGCCCCCCTGGCAGGCGGCCGACCTGACCGTCCTTGA
CAAGGAACAGTTCTTTGAGGAGCTCAAGCGCCTGTACCGCAAGAAGGTCC
TCCCCCTCGAGCTCGCGTCCAAGTACGCCCAGTTCCACTCAGCCCCCCTG
AACCCTGCGGACTTCGAGGCCAAGCCCATGGTCTTGTTGCTAGGCCAGTA
CTCGGTGGGCAAGACCTCCTTCATCCGCTCTCTCCTCCAGGGCGACTTCC
CAGGCCAGCGGGTGGGCCCGGAGCCCACGACGGACCGGTTCATGGCGGTC
ATGCACGGGCCGGAGCCCCGCTTGGTGCCGGGACACGCCCTGGCCATGCA
GGCGGACAAGCCCTTTCGGGGCGTGGCCTCCTTCGGAAACAATTTCCTGA
CCAAGTTCGAAGCTGCGGAGGTGCCGGCGCCAATTTTGAGGAACATCACC
CTCATCGACTCCCCCGGAATCCTCTCGGGGGAGAAGCAGCGGCTGGGTCG
CGACTACGACTACCAGGCCGTGATCCAGTGGTTCGCCGACCGTGCCGACC
TCATCATTATCATGTTCGACGCGCATAAGCTCGACATCTCGGACGAGCTT
CGCATCGTCATGGATGCGCTTCGGATCCACCAGGACAAGATCCGCATTTT
GCTCAACAAGGCGGACCAGATCGACTCCCAGCAGCTCATGCGCATCTACG
GCGCCTTGATGTGGAGCCTAGGGAAGGTGGTGAACACGCCGGAGGTCTGC
CGCGTGTACATTGGCTCTTTCTGGGAGCACCCGCTCAAGCATTCCCAGAA
TCGCTTCCTGCTCGAGAAGGAGAAGGCGGACCTCCTGGCCGAGCTGGACG
GACTCCCTCAGAACGCGGTGGTGCGTCGTATCAACGAGTTGGTCAAGCGC
GCGCGGTCTGTGAAAGTGCACGCCTACCTCATCCATTATTTGCGGAAGCA
GGTGCCCACGGTGTTTGGGAAGTCAGAGAAGCAAGCCAAGCTCCTCCAGA
CGCTGCCTCGCGAGTTTGTCGCCTGCGCGCGGAGGTATGGCCTCCCTCTG
GGCGATTTCCCGGACATCAACAAGTTCCGGGCACGGCTGGGGGAAGTGAA
GGACCTAAGGTAG
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protein sequence of rna5310

>rna5310-protein ID=rna5310-protein|Name=rna5310|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MYAHQLRIASRVGLGLGVAALVRSNSNSNSTTISKPTRCETAQHQQQLRR
PSSQQQTYFDHALDDREKDTAGFVGVFLDAASVKRVQNAVGGSLGRNAHA
LVQLHPEPGVKRSFAPLFGSKAEVVVRGVAEDVSTRQKVIIVDVNVGGGR
LYPSRNGHGSIPTIAMASESWDDDVADLLGVDLARRLLENGILHAKGSWD
GVLPGQLLDGIKYPPTRAVFQELDAPVACEGTICASTDYDKQSDKCIIRA
DTASGMAEKSQDEAEEVEGECPLCTYMMNSPCKDVFVVFKSCIDKAGSTD
EREDLTRCEASAAFVHECIQNFGLFREHLQEEAEEAAEISDEGKA
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mRNA from alignment at CM002465.1:680879..682008+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5310 ID=rna5310|Name=rna5310|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp|location=Sequence derived from alignment at CM002465.1:680879..682008+ (Nannochloropsis gaditana)
ATGTACGCGCACCAATTACGGATTGCGTCCCGCGTTGGCCTAGGGCTGGG
GGTAGCAGCTCTGGTGaggagcaacagcaacagcaacagcaccacAATCT
CCAAGCCCACGCGCTGTGAGACCgcgcagcaccagcagcagctccGACGA
CCATCAAGTCAACAACAAACATATTTTGACCACGCATTAGACGACCGCGA
AAAGGACACGGCGGGCTTTGTGGGAGTTTTTCTGGACGCGGCCTCAGTGA
AGCGCGTGCAAAATGCCGTGGGGGGCTCCCTGGGCCGAAACGCTCATGCC
TTGGTCCAGTTACATCCTGAACCTGGGGTAAAGCGGTCATTTGCCCCCTT
ATTTGGCAGCAAGGTACGAAGGTTCTAGGATAAAGTGCTGTTTTATGGTA
CTCTTGAGATTGATGGACTCAcccatcctctctcttccctttgcACACGT
GATAGGCCGAGGTAGTGGTAAGAGGCGTGGCTGAAGACGTGTCCACACGC
CAAAAGGTTATTATCGTCGATGTTAACGTGGGTGGAGGTCGCCTGTACCC
CTCCAGAAACGGCCACGGGAGCATTCCCACAATAGCCATGGCCTCGGAGA
GCTGGGACGATGACGTGGCGGATCTATTGGGCGTGGATCTGGCGCGTCGG
CTCCTAGAGAACGGAATATTGCACGCAAAGGGATCCTGGGACGGCGTGCT
CCCAGGTCAACTTTTGGACGGGATCAAATATCCGCCTACGCGAGCCGTCT
TCCAGGAGCTCGACGCACCCGTCGCTTGTGAAGGCACGATCTGCGCGTCC
ACAGACTACGATAAGCAGTCGGATAAGTGCATAATTCGAGCCGATACAGC
ATCGGGAATGGCGGAAAAAAgccaggacgaggcggaggaggtagaaggcG
AATGCCCCCTGTGCACGTACATGATGAACAGTCCCTGCAAGGATGTCTTC
GTGGTGTTCAAGTCCTGCATCGATAAAGCTGGCAGCACTGACGAGCGAGA
GGATCTGACACGCTGTGAAGCATCGGCGGCCTTTGTCCATGAGTGTATCC
AAAATTTTGGACTTTTCCGAGAGCATCTGCAggaagaggctgaggaggca
GCTGAGATATCAGATGAGGGGAAGGCGTGA
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Coding sequence (CDS) from alignment at CM002465.1:680879..682008+

>rna5310 ID=rna5310|Name=rna5310|organism=Nannochloropsis gaditana|type=CDS|length=2076bp|location=Sequence derived from alignment at CM002465.1:680879..682008+ (Nannochloropsis gaditana)
ATGTACGCGCACCAATTACGGATTGCGTCCCGCGTTGGCCTAGGGCTGGG
GGTAGCAGCTCTGGTGaggagcaacagcaacagcaacagcaccacAATCT
CCAAGCCCACGCGCTGTGAGACCgcgcagcaccagcagcagctccGACGA
CCATCAAGTCAACAACAAACATATTTTGACCACGCATTAGACGACCGCGA
AAAGGACACGGCGGGCTTTGTGGGAGTTTTTCTGGACGCGGCCTCAGTGA
AGCGCGTGCAAAATGCCGTGGGGGGCTCCCTGGGCCGAAACGCTCATGCC
TTGGTCCAGTTACATCCTGAACCTGGGGTAAAGCGGTCATTTGCCCCCTT
ATTTGGCAGCAAGGCCGAGGTAGTGGTAAGAGGCGTGGCTGAAGACGTGT
CCACACGCCAAAAGGTTATTATCGTCGATGTTAACGTGGGTGGAGGTCGC
CTGTACCCCTCCAGAAACGGCCACGGGAGCATTCCCACAATAGCCATGGC
CTCGGAGAGCTGGGACGATGACGTGGCGGATCTATTGGGCGTGGATCTGG
CGCGTCGGCTCCTAGAGAACGGAATATTGCACGCAAAGGGATCCTGGGAC
GGCGTGCTCCCAGGTCAACTTTTGGACGGGATCAAATATCCGCCTACGCG
AGCCGTCTTCCAGGAGCTCGACGCACCCGTCGCTTGTGAAGGCACGATCT
GCGCGTCCACAGACTACGATAAGCAGTCGGATAAGTGCATAATTCGAGCC
GATACAGCATCGGGAATGGCGGAAAAAAgccaggacgaggcggaggaggt
agaaggcGAATGCCCCCTGTGCACGTACATGATGAACAGTCCCTGCAAGG
ATGTCTTCGTGGTGTTCAAGTCCTGCATCGATAAAGCTGGCAGCACTGAC
GAGCGAGAGGATCTGACACGCTGTGAAGCATCGGCGGCCTTTGTCCATGA
GTGTATCCAAAATTTTGGACTTTTCCGAGAGCATCTGCAggaagaggctg
aggaggcaGCTGAGATATCAGATGAGGGGAAGGCGTGAATGTACGCGCAC
CAATTACGGATTGCGTCCCGCGTTGGCCTAGGGCTGGGGGTAGCAGCTCT
GGTGaggagcaacagcaacagcaacagcaccacAATCTCCAAGCCCACGC
GCTGTGAGACCgcgcagcaccagcagcagctccGACGACCATCAAGTCAA
CAACAAACATATTTTGACCACGCATTAGACGACCGCGAAAAGGACACGGC
GGGCTTTGTGGGAGTTTTTCTGGACGCGGCCTCAGTGAAGCGCGTGCAAA
ATGCCGTGGGGGGCTCCCTGGGCCGAAACGCTCATGCCTTGGTCCAGTTA
CATCCTGAACCTGGGGTAAAGCGGTCATTTGCCCCCTTATTTGGCAGCAA
GGCCGAGGTAGTGGTAAGAGGCGTGGCTGAAGACGTGTCCACACGCCAAA
AGGTTATTATCGTCGATGTTAACGTGGGTGGAGGTCGCCTGTACCCCTCC
AGAAACGGCCACGGGAGCATTCCCACAATAGCCATGGCCTCGGAGAGCTG
GGACGATGACGTGGCGGATCTATTGGGCGTGGATCTGGCGCGTCGGCTCC
TAGAGAACGGAATATTGCACGCAAAGGGATCCTGGGACGGCGTGCTCCCA
GGTCAACTTTTGGACGGGATCAAATATCCGCCTACGCGAGCCGTCTTCCA
GGAGCTCGACGCACCCGTCGCTTGTGAAGGCACGATCTGCGCGTCCACAG
ACTACGATAAGCAGTCGGATAAGTGCATAATTCGAGCCGATACAGCATCG
GGAATGGCGGAAAAAAgccaggacgaggcggaggaggtagaaggcGAATG
CCCCCTGTGCACGTACATGATGAACAGTCCCTGCAAGGATGTCTTCGTGG
TGTTCAAGTCCTGCATCGATAAAGCTGGCAGCACTGACGAGCGAGAGGAT
CTGACACGCTGTGAAGCATCGGCGGCCTTTGTCCATGAGTGTATCCAAAA
TTTTGGACTTTTCCGAGAGCATCTGCAggaagaggctgaggaggcaGCTG
AGATATCAGATGAGGGGAAGGCGTGA
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Synonyms
Publications