rna5298, rna5298 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5298
Unique Name	rna5298
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2241
Alignment location	CM002465.1:652577..654447 -

Link to JBrowse

Properties


Property Name	Value
Product	trna guanosine-2 -o-methyltransferase trm11-like protein
Orig transcript id	gnl\|cribi\|Naga_100005g91.6744.mrna
Orig protein id	gnl\|cribi\|Naga_100005g91.6744
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:652577..654447 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g91	gene5118	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25450.1	cds5285	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5298	rna5298-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:652577..654447-
coding sequence from alignment at CM002465.1:652577..654447-

mRNA sequence

>rna5298 ID=rna5298|Name=rna5298|organism=Nannochloropsis gaditana|type=mRNA|length=2241bp
ATGGCGCGGGCGAGTGTGTATCGAAGATGGAGAATGTTGTCAGTTGGGAA
CAAGTATGCGCCCAGCATCCCGACCCTTGGAGCGTGCTTTCAGTACACGC
TTTCACCACCAGCCAGAGTATGGCGTCGACATCACTCGATCAGGGCTTCC
TGCGTATCAAAGCCCTTTTCCACAGCCGCCCCGTTTGTGATCCCGGCAAC
ACCAGGCCTGTTTGGAGTGACAGGCCTTCGTCACCCAGAGGACTTTCTGC
GTCTGGCCCGGGAGTCTGTGAGCCGCTGCGAGAATTTGAAGCACGGCCTT
CTCACAGGGCGCGTCCCAGCGGGGGTTGATGTCATCCGCGACATGGACGC
AATTTCAAACACTCTTTGCATCGCGATCGATGCCGCGGAGCTTGCTCGAA
ATGTTCACTCCGAAGAAGCTTGGAGGGAAGCCGCTGAAGAGGCGTTCGCG
GGTTTGTCAGGCTATATTCACGAATTGAACACCGACGTTGGTTTGTATCA
AGCCGTGTGCTCAGTGGTGAAGGATCCTCATGTGGCTGCGACGTTAGATG
AGGAAGGAAGTCGGACAGCTCAGCTATTAAAGGCGGAGTTTGAGAGCAGT
GGCATTCACTTGCCCGATTTGGAGCGACAAGAAGTGCGGGCGCTTCTGAA
TGAAATCACCAGCTTGGAAACTATGTTCAGCAACAACCTCATTCTCGGCC
GTCGCTCATTCCAGGTCAGCAAATCTGATATCCTTGCGCAGATTCCTTCG
GAGATCGTGCAAAACGTGATACTTCCCCACCAGCCGCCGGGGCAGCCGCC
ACACCTCCTCACTCTCACCACGGATACAGCCGTCGCCAATGCCGTCCTGC
GGTACGCGCGGGACGGCAATTTGCGGCGGCGTATGTATCAGGAGGTAAAT
ACGAGTCCGCGAGAGAATTTGGAGGTGCTTTCGCGTCTCATCAAGTCGCG
CGACACTCTGGCCAGGAAGCTTGGGTTCCCAAGTTACGCCCATCGCTTCC
TAGCCGACAAGATGGCGAAATGCCCCGAGGAAGTGGACCGTTTCCTTCGT
GCCCTGGCCGAAAATGTCCGAGCCAAGGCGGGGAAAGAGTTAGAGGTCTT
GCAACGGGCAAAGCAGGAAGACGAAGGCGGTTGGGGGGACAGCGCGGATT
TTCACAGTTGGGACCTGTCTTACTATATGGGTGCTGTCAAGTCTGCCCGC
CACGGCGCCAGCACCGATGGAAAAGGTGTCTCCGCCTATCTGTCCCTCGA
GAACTGCCTACGAGGACTCGCTCTTCTCTCCCAGCGCCTGTTCGGGATAG
AGCTGCGGGAAGTAGCTCTCGACGAAACAGAGGCCTGGGCGCCCGCTGAG
TCGAAGTTGAAAAAAGTGGTCTTGCTCCACCCCCGGCACGGACAGCTCGG
AACCATCTATTTAGACCTCTATCCCCGCCAGGCTAAGTACACGCACCATG
CGCAGTTCACGGTCCGCTGTGGCTGTCTTCCCGCTGGGGCTTCCTCCTAC
CAGCTCCCCGTGGTGGCCCTGGTCTGCAATTTCTCTCCGTGCGACCCCGC
CGGGCCCGTCCTTCTCACGCATGCCGAATTGGAGGCGCTCTTCCATGAGT
TCGGGCACGCTCTCCACTCCTTACTCTCCCGCACGCGCTTTCAGCACGTG
GCGGGGACCAGGGCCCCCGTCGATTTCGTGGAAACCCCAAGCCACTTGCT
CGAGTATTTCGTCTGGGATCAGCGCGTGCTCGCCCAGTTCGCGCACCACC
ACCAGACGGGACGGCCCATCCCCGCCGAACTCACAGCTGCCTTGCGGGCA
GCAAAGAGGGAGTTCTCGGGGCTGGACACCCAGATCCAGGTCTTATACTC
CCTTGTCGATCAGAAGCTCTTCGGACCGCAGCCCCTGGCGGAGGACCCGA
CCACCTCGGCCTTCCTGGCCTCGGTGCAGGAGAAGGTGATGCAGATGCCG
CACTCGGAGGGGGCGGTCTGGCATGCTCGATTCGGGCATCTGACAGGGTA
CGGGGCGGGATACTACGGGTATCTGTACGATCGAGTCTTTGCCTCCCACT
TGTGGGAGAGGCTCTTTGTGCAAGACCCCTGGAGTAGAGAGGCGGGCGAG
CGCCTGTGGAAAGAGATGCTAGTGCACGGGGGTGGGAAGGATCCGTGTCA
TATACTCAGGGACGTGCTGGGGGAGGAACCAGCATTGGACAGTTTTCTCG
CGGAGCTAGAGGATGAAGGGGAAATAGAGCATAGGGCGTAG

protein sequence of rna5298

>rna5298-protein ID=rna5298-protein|Name=rna5298|organism=Nannochloropsis gaditana|type=polypeptide|length=436bp
MYHDDRREMYGLGRASVPYLFFSRLLLLLYPPGASSFLPSSHPPPTHLPV
TVTLAVGDAAPVVGPLPSPGVACRAPPRSKFLLLFKGGAADSGDQGTSLA
CLREAEFRGLAYRELQDLDAVAALRFEDALKTDLSLSGGRRKADKNEGRG
RGCSSSSLVYVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADV
ATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHF
LRQVPGPVDLKAPDVRLVLLEDGDAEAGARPHQVWLTREIARGSRGLTER
LSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGGRPASSCP
ARSPGDGGSRRERQHRHRSRHRQLPRPGPETSRGLPFRARGRPQGPRTPP
TLGPFRRPGRRSSLWKEGKGACSRGRCHTRSRLHAL

mRNA from alignment at CM002465.1:652577..654447-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5298 ID=rna5298|Name=rna5298|organism=Nannochloropsis gaditana|type=mRNA|length=1871bp|location=Sequence derived from alignment at CM002465.1:652577..654447- (Nannochloropsis gaditana)
GTCGTGATAATAAAAGGAATCTACGGGAGACAAGCACGGCCTTGTCCTTA
TTGAGCAGTGCAAGCGCCCGCCTCGTCACTAACGAGGGACTTGAAGCACG
TCGCGTGATTGTAAACCGGCCTATTTCTAGAAGTGCACGAGAAGGCGAGC
ATGCGCTTTCCTTGGTACCTCAACTAAGCCGTGCATAATGTATCATGACG
ACAGGAGGGAAATGTACGGGCTAGGACGCGCGTCCGTACCTTATCTTTTT
TTTAGCCGCCTCCTCCTCCTCCTGTACCCCCCCGGCGCCTCATCTTTCCT
GCCCTCCTCCCACCCCCCACCGACACACCTACCTGTTACCGTCACCCTCG
CTGTGGGAGACGCCGCGCCTGTCGTAGGTCCGTTGCCATCACCAGGGGTG
GCTTGTCGCGCCCCCCCGCGCTCGAAATTCCTCCTTCTCTTCAAGGGCGG
CGCCGCGGACAGTGGCGATCAAGGCACATCCCTGGCATGCCTCCGAGAGG
CAGAATTTCGAGGCCTGGCCTACCGAGAGCTGCAGGACCTAGACGCGGTG
GCGGCTCTACGATTCGAAGATGCCTTGAAGACTGACCTGTCCCTTTCAGG
AGGGCGTCGCAAGGCTGATAAGAATGAGGGAAGGGGGAGGGGCTGCTCCT
CCTCGTCCTTGGTGTATGTGCACGGTCTTCCCGACGACGGAAAGGTCATG
CAGGCGATTGTGCAGAGCGCAGTCTTGGTACACGCCGCCTACGCGGTGTG
GGCCTGTGCTCCCGCCTTCTCCGAGTGCGCGGACGTGGCGACTCGCATGC
TTCTTGAGGACGCGCGCTTGAGCTCTCTGAGGGCGAACGCCTCCTGGGCG
GCAGAGAGCTACGTCTTCAGTGCCAAAAGCGGGCGACGAAAGGATGTGGC
GCTCCTTCCACAGAAACTGTACGAGATGAGGCACTTCTTGAGGCAGGTGC
CCGGCCCCGTAGACCTCAAAGCTCCCGACGTGCGCTTGGTCCTGCTCGAG
GACGGCGACGCGGAGGCCGGGGCGCGGCCACACCAGGTGTGGCTCACGCG
AGAGATCGCCCGAGGATCTCGGGGACTAACAGAGCGCTTGTCTCTGAGGC
GGCGGCCGTACGTGACGACGACGAGCATGGAGCCGAAAGCCAGCCTTGTC
ATGTCCCATGTGGCGGGCCTCCGGGAGGGCGACAAAGTCTGCGACCCGAT
GGCGGGGGGGGGGGGGCGTCCTGCTAGCAGCTGCCCAGCTCGGAGCCCAG
GTGACGGTGGGAGTCGACGTGAACGCCAGCATCGACATCGGTCGCGTCAC
CGACAACTTCCGCGTCCTGGGCCTGAGACCTCCCGAGGACTTCCTTTTCG
GGCGCGCGGACGACCCCAAGGTCCACGCACGCCTCCGACGCTGGGGCCCT
TTCGACGTCCTGGTCGTAGATCCTCCTTATGGAAAGAGGGAAAAGGGGCC
TGTTCGCGCGGAAGGTGTCATACAAGAAGCCGTCTACACGCTCTATGAGC
TGGCATCCAAGGACGAGATCCTGCGGGTGGGGGGACGCCTTGTCTTCTTC
TTGCCCATGGACCCCAGGTGGGCATCGCGGGACATCGTTCCGTTGCTGCC
GACGCACCCGTCTCTGGTCATCGTCAGCATTTCGAGGCAACCTTTGAACA
CCAGGTTGGATCGGTATTTGATCGCCTTGCAGAAAACCCAAGCTTCCCGC
GAGGGAGATAGAGTTATTGCGCCACGGGAAGAAATGGAACGTGGAGCTGC
GGATGACCTGTCATACATTGATGCAAAAGTCCCATCTTGTACTTGGCATT
ATAAATAGAGCGTTACGAATAGTTGTGTAGATCAAGGCTGTAAAAAGAAA
GCATTTTTCCAAACGTGAGAC

Coding sequence (CDS) from alignment at CM002465.1:652577..654447-

>rna5298 ID=rna5298|Name=rna5298|organism=Nannochloropsis gaditana|type=CDS|length=1311bp|location=Sequence derived from alignment at CM002465.1:652577..654447- (Nannochloropsis gaditana)
ATGTATCATGACGACAGGAGGGAAATGTACGGGCTAGGACGCGCGTCCGT
ACCTTATCTTTTTTTTAGCCGCCTCCTCCTCCTCCTGTACCCCCCCGGCG
CCTCATCTTTCCTGCCCTCCTCCCACCCCCCACCGACACACCTACCTGTT
ACCGTCACCCTCGCTGTGGGAGACGCCGCGCCTGTCGTAGGTCCGTTGCC
ATCACCAGGGGTGGCTTGTCGCGCCCCCCCGCGCTCGAAATTCCTCCTTC
TCTTCAAGGGCGGCGCCGCGGACAGTGGCGATCAAGGCACATCCCTGGCA
TGCCTCCGAGAGGCAGAATTTCGAGGCCTGGCCTACCGAGAGCTGCAGGA
CCTAGACGCGGTGGCGGCTCTACGATTCGAAGATGCCTTGAAGACTGACC
TGTCCCTTTCAGGAGGGCGTCGCAAGGCTGATAAGAATGAGGGAAGGGGG
AGGGGCTGCTCCTCCTCGTCCTTGGTGTATGTGCACGGTCTTCCCGACGA
CGGAAAGGTCATGCAGGCGATTGTGCAGAGCGCAGTCTTGGTACACGCCG
CCTACGCGGTGTGGGCCTGTGCTCCCGCCTTCTCCGAGTGCGCGGACGTG
GCGACTCGCATGCTTCTTGAGGACGCGCGCTTGAGCTCTCTGAGGGCGAA
CGCCTCCTGGGCGGCAGAGAGCTACGTCTTCAGTGCCAAAAGCGGGCGAC
GAAAGGATGTGGCGCTCCTTCCACAGAAACTGTACGAGATGAGGCACTTC
TTGAGGCAGGTGCCCGGCCCCGTAGACCTCAAAGCTCCCGACGTGCGCTT
GGTCCTGCTCGAGGACGGCGACGCGGAGGCCGGGGCGCGGCCACACCAGG
TGTGGCTCACGCGAGAGATCGCCCGAGGATCTCGGGGACTAACAGAGCGC
TTGTCTCTGAGGCGGCGGCCGTACGTGACGACGACGAGCATGGAGCCGAA
AGCCAGCCTTGTCATGTCCCATGTGGCGGGCCTCCGGGAGGGCGACAAAG
TCTGCGACCCGATGGCGGGGGGGGGGGGGCGTCCTGCTAGCAGCTGCCCA
GCTCGGAGCCCAGGTGACGGTGGGAGTCGACGTGAACGCCAGCATCGACA
TCGGTCGCGTCACCGACAACTTCCGCGTCCTGGGCCTGAGACCTCCCGAG
GACTTCCTTTTCGGGCGCGCGGACGACCCCAAGGTCCACGCACGCCTCCG
ACGCTGGGGCCCTTTCGACGTCCTGGTCGTAGATCCTCCTTATGGAAAGA
GGGAAAAGGGGCCTGTTCGCGCGGAAGGTGTCATACAAGAAGCCGTCTAC
ACGCTCTATGA

Synonyms

Publications