EWM25450.1, cds5285 (CDS) Nannochloropsis gaditana

Overview
NameEWM25450.1
Unique Namecds5285
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:652950..654260 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25450.1
Producttrna guanosine-2 -o-methyltransferase trm11-like protein
Orig transcript idgnl|cribi|Naga_100005g91.6744.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:652950..654260 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|585107211|gb|EWM25450.1| (trna guanosine-2 -o-methyltransferase trm11-like protein [Nannochloropsis gaditana])

HSP 1 Score: 867.455 bits (2240), Expect = 0.000e+0
Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 0
Query:    1 MYHDDRREMYGLGRASVPYLFFSRLLLLLYPPGASSFLPSSHPPPTHLPVTVTLAVGDAAPVVGPLPSPGVACRAPPRSKFLLLFKGGAADSGDQGTSLACLREAEFRGLAYRELQDLDAVAALRFEDALKTDLSLSGGRRKADKNEGRGRGCSSSSLVYVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHFLRQVPGPVDLKAPDVRLVLLEDGDAEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGGRPASSCPARSPGDGGSRRERQHRHRSRHRQLPRPGPETSRGLPFRARGRPQGPRTPPTLGPFRRPGRRSSLWKEGKGACSRGRCHTRSRLHAL 436
            MYHDDRREMYGLGRASVPYLFFSRLLLLLYPPGASSFLPSSHPPPTHLPVTVTLAVGDAAPVVGPLPSPGVACRAPPRSKFLLLFKGGAADSGDQGTSLACLREAEFRGLAYRELQDLDAVAALRFEDALKTDLSLSGGRRKADKNEGRGRGCSSSSLVYVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHFLRQVPGPVDLKAPDVRLVLLEDGDAEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGGRPASSCPARSPGDGGSRRERQHRHRSRHRQLPRPGPETSRGLPFRARGRPQGPRTPPTLGPFRRPGRRSSLWKEGKGACSRGRCHTRSRLHAL
Sbjct:    1 MYHDDRREMYGLGRASVPYLFFSRLLLLLYPPGASSFLPSSHPPPTHLPVTVTLAVGDAAPVVGPLPSPGVACRAPPRSKFLLLFKGGAADSGDQGTSLACLREAEFRGLAYRELQDLDAVAALRFEDALKTDLSLSGGRRKADKNEGRGRGCSSSSLVYVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHFLRQVPGPVDLKAPDVRLVLLEDGDAEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGGRPASSCPARSPGDGGSRRERQHRHRSRHRQLPRPGPETSRGLPFRARGRPQGPRTPPTLGPFRRPGRRSSLWKEGKGACSRGRCHTRSRLHAL 436          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|909131781|gb|KNE58381.1| (hypothetical protein AMAG_18236 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 80.8777 bits (198), Expect = 2.389e-13
Identity = 51/170 (30.00%), Postives = 86/170 (50.59%), Query Frame = 0
Query:  174 IVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHF-LRQVPGPVDLKAPDVRLVLLEDGDAEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGG 342
            +V+ A+LV A YA+W  + ++         +L ++ R    R N  +   S+ F  ++        L  K+  +  F      GP+DLK PDV   +LED D ++   P  ++    +  G+R   ++ SL++R Y+ TTSM+P+ SL+M ++  +R G  V DP  G G
Sbjct:   89 LVRRAILVKAIYALWEESSSYD--------VLFDEIRRKPER-NTPYMTCSFKFVVETFNNSRA--LDYKVAVINRFAFMAFTGPIDLKNPDVTFGVLEDYDYKSDV-PRHLYFGIHLGSGNRAAIDKFSLKKRTYLGTTSMDPQLSLIMGNLGLVRPGTLVYDPFVGTG 246          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|471208676|ref|XP_004260933.1| (hypothetical protein EIN_185590 [Entamoeba invadens IP1] >gi|440301776|gb|ELP94162.1| hypothetical protein EIN_185590 [Entamoeba invadens IP1])

HSP 1 Score: 81.6481 bits (200), Expect = 4.582e-13
Identity = 51/197 (25.89%), Postives = 91/197 (46.19%), Query Frame = 0
Query:  154 SSSSLVYVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHFLRQVPGPVDLKAPDVRLVLLEDGD--AEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGGRPASS 348
            S+   VY++   D  + ++ +   +VL+   Y +W  A  + E   +      +   L  +    ++  +   F  K+ R  +   +  K  + +  L    G VDLK PD+ + ++E+     +    P  ++   E+  G+R L    SL+ RPY+ TTSM+P+   +MS+    REG  +CDP AG G    +S
Sbjct:   47 STICNVYLYADFDSLEDIKKVCSRSVLIETVYEIWGEAKTYEELVPIVYS---KADELIPIYKGKTFKLKVTCF-GKNYRIPEQVKIFDKFKDFK--LYDYLGAVDLKNPDLNISIMENIGHLKKTSDVPQNIYYGIELCYGNRKLMTHFSLKVRPYIGTTSMDPELCCLMSNFGCCREGSVMCDPFAGTGSTLVTS 237          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|780061141|ref|XP_011670421.1| (PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog, partial [Strongylocentrotus purpuratus])

HSP 1 Score: 80.8777 bits (198), Expect = 7.795e-13
Identity = 58/180 (32.22%), Postives = 92/180 (51.11%), Query Frame = 0
Query:  171 MQAIVQSAVLVHAAYAVWACAPAFSE-CA--DVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHFLRQVP--GPVDLKAPDVRLVLLEDGDAE---AGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGG 342
            MQ ++  +VL  +A  VWA    +SE CA  D   R  +E       + + S+  + + F    G++   A    KL  M+     +P  GPV ++ PD    + ED   +   A  +PH++++ R I+ G + L  R S++ R ++  TSM+   SLVM++ AG+REGD V DP  G G
Sbjct:   44 MQKLMNRSVLSRSAIEVWAHGSTYSEVCAGLDAVPRDEME----KYCKEDVSFCFKVHTF----GKQLSSA---AKLDTMKRLQDHLPLKGPVKMRDPDQVFYIFEDYGVQPNQAPDKPHRIFVGRWISDGQKRLAHRYSVKTRHFIGNTSMDALLSLVMTNQAGVREGDLVLDPFVGTG 212          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|1133419286|ref|XP_019865191.1| (PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog [Aethina tumida])

HSP 1 Score: 78.9518 bits (193), Expect = 2.376e-12
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 0
Query:  254 VPGPVDLKAPDVRLVLLEDGDAEAG---ARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGG 343
            V GPV+LK PDV    +E    +A      P+QV+  R IA G R L ++ SL+ R ++  TSM+P+ SL+M++ A ++EGD V DP  G G 
Sbjct:  134 VQGPVNLKNPDVLFQYIEYYGTKANNPPEYPYQVFFGRWIANGLRQLIKKFSLKTRKFIGNTSMDPQLSLLMANQAKIKEGDLVLDPFVGSGS 226          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|909150811|gb|KNE72886.1| (hypothetical protein AMAG_17123 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 79.7221 bits (195), Expect = 2.754e-12
Identity = 53/170 (31.18%), Postives = 90/170 (52.94%), Query Frame = 0
Query:  174 IVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHF-LRQVPGPVDLKAPDVRLVLLEDGDAEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGG 342
            +V+ ++LV A YA+W  + ++          LL+  R    R NA +   S+ F  ++    +   L  K+  +  F      GP+DLK+PDV L +LED D ++   P  ++   ++  G+R   ++ SL++R Y+ TTSM+P+ SL+M ++  +R G  V DP  G G
Sbjct:  116 LVRRSILVKAIYALWEESRSYE--------ALLDQIRRKPER-NAPYMTCSFKFVVET--FNNSRALDYKVAIINRFAFMAFTGPIDLKSPDVTLGVLEDYDYKSDV-PRYLYFGIQLGFGNRPAIDKFSLKKRTYLGTTSMDPQLSLIMGNLGLVRPGTLVYDPFVGTG 273          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|1069673232|ref|XP_018318156.1| (PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog isoform X2 [Trachymyrmex zeteki])

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-11
Identity = 51/187 (27.27%), Postives = 85/187 (45.45%), Query Frame = 0
Query:  160 YVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHFLRQVPGPVDLKAPDVRLVLLED---GDAEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGG 343
            ++  L D+  V Q I   AV +     +WA A    E  +      +++    ++    S+      F     +R+ +  +    Y        + GPV LK PD+ L  +E       +    PH+ +  + IA G R L ++LSL+ R ++  TSM+P+ SL+M++ A +R GD V DP  G G 
Sbjct:   15 WIVDLSDENLVHQ-IASRAVSLRFCLQLWAQAEQNKELHNSLKAYSIKNLETLTIDKKKSFKIVVETFCKHYSQREKINKIESFSY------LPLEGPVKLKNPDITLCYIEYYGLNPNDIPEEPHEYFFGKWIADGQRELIQKLSLKTRKFIGNTSMDPQLSLIMANQAQIRNGDLVFDPFVGTGS 194          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|1069673229|ref|XP_018318155.1| (PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog isoform X1 [Trachymyrmex zeteki])

HSP 1 Score: 77.0258 bits (188), Expect = 1.250e-11
Identity = 51/187 (27.27%), Postives = 85/187 (45.45%), Query Frame = 0
Query:  160 YVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHFLRQVPGPVDLKAPDVRLVLLED---GDAEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGG 343
            ++  L D+  V Q I   AV +     +WA A    E  +      +++    ++    S+      F     +R+ +  +    Y        + GPV LK PD+ L  +E       +    PH+ +  + IA G R L ++LSL+ R ++  TSM+P+ SL+M++ A +R GD V DP  G G 
Sbjct:   50 WIVDLSDENLVHQ-IASRAVSLRFCLQLWAQAEQNKELHNSLKAYSIKNLETLTIDKKKSFKIVVETFCKHYSQREKINKIESFSY------LPLEGPVKLKNPDITLCYIEYYGLNPNDIPEEPHEYFFGKWIADGQRELIQKLSLKTRKFIGNTSMDPQLSLIMANQAQIRNGDLVFDPFVGTGS 229          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|672809220|ref|XP_008859648.1| (RNA methylase family UPF0020 protein [Entamoeba nuttalli P19] >gi|407036126|gb|EKE38018.1| RNA methylase family UPF0020 protein [Entamoeba nuttalli P19])

HSP 1 Score: 76.6406 bits (187), Expect = 1.791e-11
Identity = 47/193 (24.35%), Postives = 89/193 (46.11%), Query Frame = 0
Query:  159 VYVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHF-LRQVPGPVDLKAPDVRLVLLEDGD--AEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGGRPASS 348
            VY++   +    ++ I   +VL+   Y +W  A  + E   +      E   L  +    ++  +   F    GR        ++  + + F L    G V+LK P++ + ++E+     +A  +P  ++    + +G+R L    SL+ RPY+ TTSM+P+  ++MS++   R G  +CDP  G G    +S
Sbjct:   40 VYMYATFESLDDIKKICSRSVLIKTVYEIWGEAKTYEELVPIVYSKADE---LIPIHKGKTFRLKVTCF----GRNYKQPEQIERFDKFKDFKLYDYLGSVNLKKPELSIAIMENIGHLKKATEQPKNIYFGYSLCKGNRKLVNHFSLKVRPYIGTTSMDPELCVIMSNMGCCRPGTVMCDPFTGTGSTLVTS 225          
BLAST of EWM25450.1 vs. NCBI_GenBank
Match: gi|183230417|ref|XP_655659.2| (hypothetical protein [Entamoeba histolytica HM-1:IMSS] >gi|169802922|gb|EAL50235.2| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS] >gi|449705862|gb|EMD45822.1| RNA methylase family UPF0020 protein [Entamoeba histolytica KU27] >gi|480522848|gb|ENY62202.1| RNA methylase family UPF0020 protein, putative [Entamoeba histolytica HM-1:IMSS-A] >gi|1033410525|dbj|GAT92324.1| hypothetical protein conserved [Entamoeba histolytica])

HSP 1 Score: 76.6406 bits (187), Expect = 1.841e-11
Identity = 47/193 (24.35%), Postives = 89/193 (46.11%), Query Frame = 0
Query:  159 VYVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHF-LRQVPGPVDLKAPDVRLVLLEDGD--AEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGGRPASS 348
            VY++   +    ++ I   +VL+   Y +W  A  + E   +      E   L  +    ++  +   F    GR        ++  + + F L    G V+LK P++ + ++E+     +A  +P  ++    + +G+R L    SL+ RPY+ TTSM+P+  ++MS++   R G  +CDP  G G    +S
Sbjct:   40 VYMYATFESLDDIKKICSRSVLIKTVYEIWGEAKTYEELVPIVYSKADE---LIPIHKGKTFRLKVTCF----GRNYKQPEQIERFDKFKDFKLYDYLGSVNLKKPELSIAIMENIGHLKKATEQPKNIYFGYSLCKGNRKLVNHFSLKVRPYIGTTSMDPELCVIMSNMGCCRPGTVMCDPFTGTGSTLVTS 225          
The following BLAST results are available for this feature:
BLAST of EWM25450.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107211|gb|EWM25450.1|0.000e+0100.00trna guanosine-2 -o-methyltransferase trm11-like p... [more]
gi|909131781|gb|KNE58381.1|2.389e-1330.00hypothetical protein AMAG_18236 [Allomyces macrogy... [more]
gi|471208676|ref|XP_004260933.1|4.582e-1325.89hypothetical protein EIN_185590 [Entamoeba invaden... [more]
gi|780061141|ref|XP_011670421.1|7.795e-1332.22PREDICTED: tRNA (guanine(10)-N2)-methyltransferase... [more]
gi|1133419286|ref|XP_019865191.1|2.376e-1241.94PREDICTED: tRNA (guanine(10)-N2)-methyltransferase... [more]
gi|909150811|gb|KNE72886.1|2.754e-1231.18hypothetical protein AMAG_17123 [Allomyces macrogy... [more]
gi|1069673232|ref|XP_018318156.1|1.106e-1127.27PREDICTED: tRNA (guanine(10)-N2)-methyltransferase... [more]
gi|1069673229|ref|XP_018318155.1|1.250e-1127.27PREDICTED: tRNA (guanine(10)-N2)-methyltransferase... [more]
gi|672809220|ref|XP_008859648.1|1.791e-1124.35RNA methylase family UPF0020 protein [Entamoeba nu... [more]
gi|183230417|ref|XP_655659.2|1.841e-1124.35hypothetical protein [Entamoeba histolytica HM-1:I... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5298rna5298Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications