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Properties
| Property Name | Value |
|---|
| Product | atp-dependent clp protease proteolytic subunit |
| Orig transcript id | gnl|cribi|Naga_100005g83.6735.mrna |
| Orig protein id | gnl|cribi|Naga_100005g83.6735 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:632504..633580 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5290 ID=rna5290|Name=rna5290|organism=Nannochloropsis gaditana|type=mRNA|length=1595bp
TGCTGCTGCTTGCATGCCACTCAAGGGAATTGTCGTGCGTCGCGAACACG
AGAAATAAAATGAAGGACTGAGCAACCCGCTGGCTGCGACGTACCTGTTG
CACGATGGCACGTATAGCTCAACTTTTGTAACCCTAGCAGGCGCTCCTGC
TGCTACTGCATGCGTTTGCCAAGACCTTTCTCGTTCGTTGCAGCCATCAT
GAACACATGTCGTAATGGCATGTGCGAAAACGGGAATAAAATTTCCAACG
CGGTTTCAGCGTCGAGCCGTGTTGACATGTCCCCTTTGCCCGTGGATGGG
GGGCACGTGGTGATTCGCGATCCCGCTTCATTCCTTGCCAAGAAGGCAAA
GATTGCTTCCGACGGGCCCAGTAAATTACAGCTCCTCTTCGACTGGGACT
TCACGCTCACGCACTTCTTCTTGAACGGGCGACGCGCCTGCAGCTGCCAC
AAAGCGATCGAAGACTGCGACCTGCTCTCAGCCGCCTACCACGAGAAAGC
GCAGGCGCTGCAAGAGTACTACTATGCCAAGGAGGTGGATCCCTCCCTGT
CCGTGGCGGAGAAGGTCCCCCTCATGGAGGCCTGGGTGCGGAGAGCCCAC
GACCTCCTCATCCACCATGGCTTCCGCCGATCGCTCCTCCCGCTGGCGGT
CAAGCACGCGCACCTGGCCGTGAGGGAGGGCTGTCAGGAGGTGATTGACT
TGAGTGCGCGGGCGGCGGTGCCCCTCTTGGTCTTCTCGGCGGGCATCGCG
GACGTGCTCGAAGAGGTGTGCCGGCAGCAGCTCCCCAGGCCCTTGCCGGA
CACCGTGCACGTGGTCTCCAACCGAATGGTCTTCTCGCCCGTCGCGGCCG
CGTCCCCCGCCGACGCCGGTGCCGCCAGGCCCTCTGTCGGGGCTCCGCAG
CGGGGTGGTAGGGGCGGGCTGGAGGAGCCGAGTCAGGCAGGGGCCGAGGA
CGGGGTATTGGTGGGCTTTACCGAACCAGTTTTCCACGTTTTCAATAAGC
GAGCAGAGAGTGTGCTCAACACCTCCGCCTACTTCCATCAGATCGACTAC
GAGAAACGGAAGCACGCGATCCTGGTGGGCGACAGCCTCGGAGACCTGCA
CATGAGTGACGGGCTGGAGCTTGAGGAAATCATTAAAGTGGGGCTGCTGA
ACGACAGGGTTGAAGAGCGTCTCGACGAATATAGTCAAAAGTTTGATGTG
GTGTTGCTCGGTGACGGAGACCTGACCTACATAATAGGCTTACTGCGTGA
ATTGATATCCGATGAAGGTCAAAAATAGGAATAAATTAAGCTTTTAGAAA
GTAAAAGTGCACCTGACCTGTCATTGAAATGCATGAGCAAGAGATGTGAC
AATTTGTACGCTAGTTGCTTTAATTGCTTGGGCCCATGGCGCACGTTGCT
GTTCTGTGTCACGCTCGTGGGGGGGAGGTCGCCGGTGCCCTCGCGGCCTC
AGTATCTTGCTGGCCCTTGTCGTTTACAACAAAAACCTCACCGGCTGGAC
TTGTCTTACGGGTGCTTGCCTGGACTAGATAGACATTCTATCCCCTCTGT
CATTGTGTCCTCCACTTTTTGGGAGGATTTCGCATTTTTCCTGGC back to topprotein sequence of rna5290 >rna5290-protein ID=rna5290-protein|Name=rna5290|organism=Nannochloropsis gaditana|type=polypeptide|length=302bp
MRPSIFFTLGVAVCCCFLSTVTRAYRAPSFAAEPSRASKWMLGSRSAGIA
LAPTIKPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNR
LYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIA
GLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIH
QPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDN
YLSAQEALEHGLIDEIVELEKAMEPESPNAQLDPVRAFAGVGKDDDPLKY
LP back to topmRNA from alignment at CM002465.1:632504..633580+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5290 ID=rna5290|Name=rna5290|organism=Nannochloropsis gaditana|type=mRNA|length=1077bp|location=Sequence derived from alignment at CM002465.1:632504..633580+ (Nannochloropsis gaditana)
AGCCTCACACTCCAACGCTATCTTCACAGATCACCCATGCGACCATCAAT
TTTTTTCACACTGGGTGTGGCCGTatgctgctgcttcctctcGACCGTGA
CTAGAGCGTACAGGGCGCCGTCCTTCGCTGCGGAGCCTTCGCGTGCCAGC
AAATGGATGCTCGGAAGCCGCTCAGCAGGCATCGCCCTGGCGCCCACGAT
TAAACCCGCTGCATCTTCCTCACGTGGTGGtcgcggaggagcaggctcGT
TGGTGATGATGCCCATCGGTGTGCCAAAGGTGGCGTACAGGGTACCAGGC
TCAGGAAGCGCGGACTGGGTAGACATCTACAATCGGTTATACAGGGAGCG
CATAATTTTCTTAGGACAGGAAATAGATGATGACTATGCCAACCAAATCA
TAGGTGTGCTCTTGTATCTGGATCAGGAGGATAGCTCCCGGCCCATCTAT
ATGTACATCAACTGCCCGGGGGGCTCGGTGATCGCGGGCTTGGCCATCTA
CGACGTGATGCAGCTCATCCGCTCAGAGATAGTCACGATCAACATTGGGA
TGGCCGCGTCCATGGCTTCCTTTCTGCTGGCagcagggaagaagggcaaa
cgtctcgccctcccccactcgcGCGTGATGATCCATCAGCCCATGGGGGG
CGCCCAGGGTCAGGCGGAAGATatcaaggtggaggcggctcAGATCTTAC
GGATCAAAAAGAACCTGGTGGGCATGTACAGCAAAATGACGGGAAGGGCC
ACGGAGCAGAtcgtgatggatttggacaGAGACAATTACCTGTCGGCGCA
GGAGGCGCTAGAGCACGGTTTGATCGACGAGATCGTGGAGCTagagaagg
cgatggagccAGAGAGCCCCAACGCTCAGCTAGACCCCGTCAGGGCCTtc
gcgggggtggggaaggatgaCGATCCGCTGAAATACTTGCCCTGAGTGCA
CGTCAcggcggagagagggacgggagtCACGGCGGCACCAGGGAAGGGGT
CTTCCAGAGGGTGCGAGGCCGTGCGAGGTCCTTTTCGATAAGAAACCAGT
TGCTGAGGCAATGTGCGTAATTTTGCG back to topCoding sequence (CDS) from alignment at CM002465.1:632504..633580+ >rna5290 ID=rna5290|Name=rna5290|organism=Nannochloropsis gaditana|type=CDS|length=909bp|location=Sequence derived from alignment at CM002465.1:632504..633580+ (Nannochloropsis gaditana)
ATGCGACCATCAATTTTTTTCACACTGGGTGTGGCCGTatgctgctgctt
cctctcGACCGTGACTAGAGCGTACAGGGCGCCGTCCTTCGCTGCGGAGC
CTTCGCGTGCCAGCAAATGGATGCTCGGAAGCCGCTCAGCAGGCATCGCC
CTGGCGCCCACGATTAAACCCGCTGCATCTTCCTCACGTGGTGGtcgcgg
aggagcaggctcGTTGGTGATGATGCCCATCGGTGTGCCAAAGGTGGCGT
ACAGGGTACCAGGCTCAGGAAGCGCGGACTGGGTAGACATCTACAATCGG
TTATACAGGGAGCGCATAATTTTCTTAGGACAGGAAATAGATGATGACTA
TGCCAACCAAATCATAGGTGTGCTCTTGTATCTGGATCAGGAGGATAGCT
CCCGGCCCATCTATATGTACATCAACTGCCCGGGGGGCTCGGTGATCGCG
GGCTTGGCCATCTACGACGTGATGCAGCTCATCCGCTCAGAGATAGTCAC
GATCAACATTGGGATGGCCGCGTCCATGGCTTCCTTTCTGCTGGCagcag
ggaagaagggcaaacgtctcgccctcccccactcgcGCGTGATGATCCAT
CAGCCCATGGGGGGCGCCCAGGGTCAGGCGGAAGATatcaaggtggaggc
ggctcAGATCTTACGGATCAAAAAGAACCTGGTGGGCATGTACAGCAAAA
TGACGGGAAGGGCCACGGAGCAGAtcgtgatggatttggacaGAGACAAT
TACCTGTCGGCGCAGGAGGCGCTAGAGCACGGTTTGATCGACGAGATCGT
GGAGCTagagaaggcgatggagccAGAGAGCCCCAACGCTCAGCTAGACC
CCGTCAGGGCCTtcgcgggggtggggaaggatgaCGATCCGCTGAAATAC
TTGCCCTGA back to top
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