EWM25441.1, cds5277 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|585107202|gb|EWM25441.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana]) HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query: 1 MRPSIFFTLGVAVCCCFLSTVTRAYRAPSFAAEPSRASKWMLGSRSAGIALAPTIKPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESPNAQLDPVRAFAGVGKDDDPLKYLP 302
MRPSIFFTLGVAVCCCFLSTVTRAYRAPSFAAEPSRASKWMLGSRSAGIALAPTIKPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESPNAQLDPVRAFAGVGKDDDPLKYLP
Sbjct: 1 MRPSIFFTLGVAVCCCFLSTVTRAYRAPSFAAEPSRASKWMLGSRSAGIALAPTIKPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESPNAQLDPVRAFAGVGKDDDPLKYLP 302
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|873231363|emb|CEM08610.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 354.369 bits (908), Expect = 1.217e-119 Identity = 167/214 (78.04%), Postives = 192/214 (89.72%), Query Frame = 0
Query: 57 PAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELE 270
PAASS G GSL MMPIGVPKVAYR+PGS +ADW+DIYNRLYRERIIFLGQEIDD++ANQIIGV+LYLD EDS++PIY+Y+NCPGGSVIAGLAIYD MQ I+SE+VTIN+G++ASMASFLLAAG KGKR ALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIK NLV MYS MTG+ EQI+ DLDRDN++SAQ+A E+GLID +++L+
Sbjct: 80 PAASS------GVGSLKMMPIGVPKVAYRIPGSPNADWIDIYNRLYRERIIFLGQEIDDEFANQIIGVMLYLDSEDSTKPIYIYMNCPGGSVIAGLAIYDTMQHIKSEVVTINVGLSASMASFLLAAGTKGKRFALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKDNLVKMYSMMTGQTREQIIKDLDRDNFMSAQQAKEYGLIDHVIDLK 287
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|1210532135|dbj|GAX09294.1| (hypothetical protein FisN_17Lh042 [Fistulifera solaris]) HSP 1 Score: 334.724 bits (857), Expect = 2.185e-112 Identity = 160/221 (72.40%), Postives = 187/221 (84.62%), Query Frame = 0
Query: 56 KPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPE 276
K +ASSSR + MMPIGVPKVAYRVPGS SADWVDIYNRLYRERIIFLG EIDD+ ANQ+IGV+LYLD EDS +PIY+YIN PGGSVIAGLAIYD MQ I+SE++TIN+G+AASM SF+LAAG KGKRLALP SR+MIHQPMGGA+GQAEDIKVEA QI+RI+ NLV MYS MTG+ +QI+ DLDRDN++SAQEALE+GLID ++E K + +
Sbjct: 49 KSSASSSR-----RNDIKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSDKPIYLYINSPGGSVIAGLAIYDCMQHIKSEVITINLGLAASMGSFILAAGSKGKRLALPSSRIMIHQPMGGARGQAEDIKVEAGQIMRIRDNLVKMYSMMTGQTQDQIIKDLDRDNFMSAQEALEYGLIDRVLEYNKQTDTQ 264
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|1072227581|gb|OEU12320.1| (ATP-dependent Clp protease proteolytic subunit [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 328.561 bits (841), Expect = 1.105e-110 Identity = 154/209 (73.68%), Postives = 181/209 (86.60%), Query Frame = 0
Query: 68 GAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPE 276
GA S+ MMPIGVPKVAYRVPGS ADWVDIYNRLYRERIIFLG EIDD+ +NQ+IGV+LYLD EDSS+PIY+YIN PGGSVI+GLAI D MQ I+SE++TIN+G+AASMASF+LAAG KGKRLALP SR MIHQPMGGAQGQAEDIKVEAAQI++I+ NLV MYS MTG+ T+ I+ DLDRDN+LSA EA E+GL+D ++E K + +
Sbjct: 4 GAASVTMMPIGVPKVAYRVPGSQQADWVDIYNRLYRERIIFLGAEIDDELSNQVIGVMLYLDSEDSSKPIYLYINSPGGSVISGLAIIDCMQHIKSEVITINLGLAASMASFILAAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMKIRDNLVKMYSMMTGQTTDTIIKDLDRDNFLSAYEAEEYGLVDRVLEYNKDTDTQ 212
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|1210527998|dbj|GAX13113.1| (hypothetical protein FisN_17Hh042 [Fistulifera solaris]) HSP 1 Score: 330.102 bits (845), Expect = 1.730e-110 Identity = 154/203 (75.86%), Postives = 179/203 (88.18%), Query Frame = 0
Query: 74 MMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPE 276
MMPIGVPKVAYRVPGS SADWVDIYNRLYRERIIFLG EIDD+ ANQ+IGV+LYLD EDS +PIY+YIN PGGSVIAGLAIYD MQ I+SE++TIN+G+AASM SF+LAAG KGKRLALP SR+MIHQPMGGA+GQAEDIKVEA QI+RI+ NLV MYS MTG+ +QI+ DLDRDN++SAQEALE+GLID ++E K + +
Sbjct: 62 MMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSDKPIYLYINSPGGSVIAGLAIYDCMQHIKSEVITINLGLAASMGSFILAAGSKGKRLALPSSRIMIHQPMGGARGQAEDIKVEAGQIMRIRDNLVKMYSMMTGQTQDQIIKDLDRDNFMSAQEALEYGLIDRVLEYNKQTDTQ 264
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|224007247|ref|XP_002292583.1| (catalytic subunit of clp protease [Thalassiosira pseudonana CCMP1335] >gi|220971445|gb|EED89779.1| catalytic subunit of clp protease [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 326.635 bits (836), Expect = 3.287e-110 Identity = 153/204 (75.00%), Postives = 180/204 (88.24%), Query Frame = 0
Query: 75 MPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESP 278
MPIGVPKVAYRVPGS +WVDIYNRLYRERIIFLG EIDD+ ANQIIGV+LYLD+EDS++PIY+YIN PGGSVI+GLAI+D MQLI+SE++TIN+G+AASMASF+L+AG KGKRLALP SR+MIHQPMGGAQGQA+DIKVEAAQI+RI+ NLV MYS TG+ TEQI DLDRDN++SAQEALE+GLID ++E P +P
Sbjct: 1 MPIGVPKVAYRVPGSSGGEWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDEEDSTKPIYLYINSPGGSVISGLAIFDAMQLIKSEVITINLGLAASMASFILSAGSKGKRLALPSSRIMIHQPMGGAQGQAQDIKVEAAQIMRIRDNLVKMYSMFTGQTTEQITKDLDRDNFMSAQEALEYGLIDRVLE-----RPNTP 199
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|219124070|ref|XP_002182335.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406296|gb|EEC46236.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 325.094 bits (832), Expect = 2.076e-109 Identity = 149/206 (72.33%), Postives = 180/206 (87.38%), Query Frame = 0
Query: 71 SLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPE 276
++ MMPIGVPKVAYRVPGS SADWVDIYNRLYRERIIFLG EIDD+ ANQ+IGV+LYLD EDSS+PIY+YIN PGGSVI+GLAI+D MQ I+SE++TIN+G+AASM SF+L AG KGKRLALP SR MIHQPMGGAQGQAEDIKVEAAQI+RI+ NLV YS MTG+ ++I+ DLDRDN++SAQEA+E+GL+D +++ K + +
Sbjct: 8 TITMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSSKPIYLYINSPGGSVISGLAIFDAMQHIKSEVITINLGLAASMGSFILGAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKSYSMMTGQTQDRIIQDLDRDNFMSAQEAMEYGLVDRVLDYNKNTDSQ 213
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|397613755|gb|EJK62404.1| (hypothetical protein THAOC_16984 [Thalassiosira oceanica]) HSP 1 Score: 327.791 bits (839), Expect = 2.839e-109 Identity = 155/209 (74.16%), Postives = 181/209 (86.60%), Query Frame = 0
Query: 72 LVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESPNA 280
+ MMPIGVPKVAYRVPG A+WVDIYNRLYRERIIFLG EIDD+ ANQIIGV+LYLD+EDSS+PIY+YIN PGGSVIAGLAI+D MQLI+SE++TIN+G+AASMASF+L+AG KGKRLALP SR+MIHQPMGGAQGQA+DIKVEAAQI+RI+ NLV MYS TG+ T+QI DLDRDN++SAQ ALE+GLID ++E P P A
Sbjct: 57 ITMMPIGVPKVAYRVPGGAGAEWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDEEDSSKPIYLYINSPGGSVIAGLAIFDAMQLIKSEVITINLGLAASMASFILSAGSKGKRLALPSSRIMIHQPMGGAQGQAQDIKVEAAQIMRIRDNLVKMYSMFTGQTTDQITKDLDRDNFMSAQTALEYGLIDRVLE-----RPSGPGA 260
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|399949673|gb|AFP65331.1| (ATP-dependent, proteolytic subunit (nucleomorph) [Chroomonas mesostigmatica CCMP1168]) HSP 1 Score: 323.939 bits (829), Expect = 1.416e-108 Identity = 149/210 (70.95%), Postives = 184/210 (87.62%), Query Frame = 0
Query: 61 SSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELE 270
S + + + ++ MMPIGVPKVAYRVPG+ SADWVDIYNRLYRERIIFLGQEIDD+ ANQII V+LYLD ED+S+PIY+YIN PGGSVI+GLA+YD M+ I+SE+VTIN+G+AASMASF+LAAG+KGKRLALPHSR+MIHQPMGGAQGQA DIKVEA QILRI+K+L Y++MTGR E+++ D+DRDN++SA EA+E+GLID ++E
Sbjct: 25 SKKIHKKNSATIKMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMYDTMRHIKSEVVTINVGLAASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQQILRIRKSLTEDYAQMTGRPYEKVLQDMDRDNFMSAYEAVEYGLIDRVIEFN 234
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|676395251|ref|XP_009040903.1| (hypothetical protein AURANDRAFT_32730 [Aureococcus anophagefferens] >gi|323448447|gb|EGB04345.1| hypothetical protein AURANDRAFT_32730 [Aureococcus anophagefferens]) HSP 1 Score: 322.398 bits (825), Expect = 1.532e-108 Identity = 148/193 (76.68%), Postives = 178/193 (92.23%), Query Frame = 0
Query: 75 MPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIV 267
MPIGVPKVAYRVPG+ SADW+DIYNRLYRERIIFLGQEIDD+ ANQIIGV+LYLD EDS++PIY+YINCPGGSVIAGLAI+D M I+S++VTINIG++ASMASFLL G KG RLALP+SRVMIHQPMGGAQGQAEDIKVEAAQI+RIK+NLV +Y+ MTG+ +QI++DLDRDN++SAQEA ++G+ID+++
Sbjct: 1 MPIGVPKVAYRVPGAPSADWIDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYLYINCPGGSVIAGLAIFDTMNHIKSKVVTINIGLSASMASFLLCGGTKGSRLALPNSRVMIHQPMGGAQGQAEDIKVEAAQIIRIKENLVKLYAMMTGQTQDQIILDLDRDNFMSAQEACDYGIIDKVI 193 The following BLAST results are available for this feature:
BLAST of EWM25441.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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