EWM25441.1, cds5277 (CDS) Nannochloropsis gaditana

Overview
NameEWM25441.1
Unique Namecds5277
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:632540..633448 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25441.1
Productatp-dependent clp protease proteolytic subunit
Orig transcript idgnl|cribi|Naga_100005g83.6735.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:632540..633448 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR018215ClpP_AS
IPR023562ClpP/TepA
IPR029045ClpP/crotonase-like_dom
IPR001907ClpP
Homology
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|585107202|gb|EWM25441.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query:    1 MRPSIFFTLGVAVCCCFLSTVTRAYRAPSFAAEPSRASKWMLGSRSAGIALAPTIKPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESPNAQLDPVRAFAGVGKDDDPLKYLP 302
            MRPSIFFTLGVAVCCCFLSTVTRAYRAPSFAAEPSRASKWMLGSRSAGIALAPTIKPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESPNAQLDPVRAFAGVGKDDDPLKYLP
Sbjct:    1 MRPSIFFTLGVAVCCCFLSTVTRAYRAPSFAAEPSRASKWMLGSRSAGIALAPTIKPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESPNAQLDPVRAFAGVGKDDDPLKYLP 302          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|873231363|emb|CEM08610.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 354.369 bits (908), Expect = 1.217e-119
Identity = 167/214 (78.04%), Postives = 192/214 (89.72%), Query Frame = 0
Query:   57 PAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELE 270
            PAASS      G GSL MMPIGVPKVAYR+PGS +ADW+DIYNRLYRERIIFLGQEIDD++ANQIIGV+LYLD EDS++PIY+Y+NCPGGSVIAGLAIYD MQ I+SE+VTIN+G++ASMASFLLAAG KGKR ALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIK NLV MYS MTG+  EQI+ DLDRDN++SAQ+A E+GLID +++L+
Sbjct:   80 PAASS------GVGSLKMMPIGVPKVAYRIPGSPNADWIDIYNRLYRERIIFLGQEIDDEFANQIIGVMLYLDSEDSTKPIYIYMNCPGGSVIAGLAIYDTMQHIKSEVVTINVGLSASMASFLLAAGTKGKRFALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKDNLVKMYSMMTGQTREQIIKDLDRDNFMSAQQAKEYGLIDHVIDLK 287          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|1210532135|dbj|GAX09294.1| (hypothetical protein FisN_17Lh042 [Fistulifera solaris])

HSP 1 Score: 334.724 bits (857), Expect = 2.185e-112
Identity = 160/221 (72.40%), Postives = 187/221 (84.62%), Query Frame = 0
Query:   56 KPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPE 276
            K +ASSSR        + MMPIGVPKVAYRVPGS SADWVDIYNRLYRERIIFLG EIDD+ ANQ+IGV+LYLD EDS +PIY+YIN PGGSVIAGLAIYD MQ I+SE++TIN+G+AASM SF+LAAG KGKRLALP SR+MIHQPMGGA+GQAEDIKVEA QI+RI+ NLV MYS MTG+  +QI+ DLDRDN++SAQEALE+GLID ++E  K  + +
Sbjct:   49 KSSASSSR-----RNDIKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSDKPIYLYINSPGGSVIAGLAIYDCMQHIKSEVITINLGLAASMGSFILAAGSKGKRLALPSSRIMIHQPMGGARGQAEDIKVEAGQIMRIRDNLVKMYSMMTGQTQDQIIKDLDRDNFMSAQEALEYGLIDRVLEYNKQTDTQ 264          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|1072227581|gb|OEU12320.1| (ATP-dependent Clp protease proteolytic subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 328.561 bits (841), Expect = 1.105e-110
Identity = 154/209 (73.68%), Postives = 181/209 (86.60%), Query Frame = 0
Query:   68 GAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPE 276
            GA S+ MMPIGVPKVAYRVPGS  ADWVDIYNRLYRERIIFLG EIDD+ +NQ+IGV+LYLD EDSS+PIY+YIN PGGSVI+GLAI D MQ I+SE++TIN+G+AASMASF+LAAG KGKRLALP SR MIHQPMGGAQGQAEDIKVEAAQI++I+ NLV MYS MTG+ T+ I+ DLDRDN+LSA EA E+GL+D ++E  K  + +
Sbjct:    4 GAASVTMMPIGVPKVAYRVPGSQQADWVDIYNRLYRERIIFLGAEIDDELSNQVIGVMLYLDSEDSSKPIYLYINSPGGSVISGLAIIDCMQHIKSEVITINLGLAASMASFILAAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMKIRDNLVKMYSMMTGQTTDTIIKDLDRDNFLSAYEAEEYGLVDRVLEYNKDTDTQ 212          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|1210527998|dbj|GAX13113.1| (hypothetical protein FisN_17Hh042 [Fistulifera solaris])

HSP 1 Score: 330.102 bits (845), Expect = 1.730e-110
Identity = 154/203 (75.86%), Postives = 179/203 (88.18%), Query Frame = 0
Query:   74 MMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPE 276
            MMPIGVPKVAYRVPGS SADWVDIYNRLYRERIIFLG EIDD+ ANQ+IGV+LYLD EDS +PIY+YIN PGGSVIAGLAIYD MQ I+SE++TIN+G+AASM SF+LAAG KGKRLALP SR+MIHQPMGGA+GQAEDIKVEA QI+RI+ NLV MYS MTG+  +QI+ DLDRDN++SAQEALE+GLID ++E  K  + +
Sbjct:   62 MMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSDKPIYLYINSPGGSVIAGLAIYDCMQHIKSEVITINLGLAASMGSFILAAGSKGKRLALPSSRIMIHQPMGGARGQAEDIKVEAGQIMRIRDNLVKMYSMMTGQTQDQIIKDLDRDNFMSAQEALEYGLIDRVLEYNKQTDTQ 264          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|224007247|ref|XP_002292583.1| (catalytic subunit of clp protease [Thalassiosira pseudonana CCMP1335] >gi|220971445|gb|EED89779.1| catalytic subunit of clp protease [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 326.635 bits (836), Expect = 3.287e-110
Identity = 153/204 (75.00%), Postives = 180/204 (88.24%), Query Frame = 0
Query:   75 MPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESP 278
            MPIGVPKVAYRVPGS   +WVDIYNRLYRERIIFLG EIDD+ ANQIIGV+LYLD+EDS++PIY+YIN PGGSVI+GLAI+D MQLI+SE++TIN+G+AASMASF+L+AG KGKRLALP SR+MIHQPMGGAQGQA+DIKVEAAQI+RI+ NLV MYS  TG+ TEQI  DLDRDN++SAQEALE+GLID ++E      P +P
Sbjct:    1 MPIGVPKVAYRVPGSSGGEWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDEEDSTKPIYLYINSPGGSVISGLAIFDAMQLIKSEVITINLGLAASMASFILSAGSKGKRLALPSSRIMIHQPMGGAQGQAQDIKVEAAQIMRIRDNLVKMYSMFTGQTTEQITKDLDRDNFMSAQEALEYGLIDRVLE-----RPNTP 199          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|219124070|ref|XP_002182335.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406296|gb|EEC46236.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 325.094 bits (832), Expect = 2.076e-109
Identity = 149/206 (72.33%), Postives = 180/206 (87.38%), Query Frame = 0
Query:   71 SLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPE 276
            ++ MMPIGVPKVAYRVPGS SADWVDIYNRLYRERIIFLG EIDD+ ANQ+IGV+LYLD EDSS+PIY+YIN PGGSVI+GLAI+D MQ I+SE++TIN+G+AASM SF+L AG KGKRLALP SR MIHQPMGGAQGQAEDIKVEAAQI+RI+ NLV  YS MTG+  ++I+ DLDRDN++SAQEA+E+GL+D +++  K  + +
Sbjct:    8 TITMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSSKPIYLYINSPGGSVISGLAIFDAMQHIKSEVITINLGLAASMGSFILGAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKSYSMMTGQTQDRIIQDLDRDNFMSAQEAMEYGLVDRVLDYNKNTDSQ 213          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|397613755|gb|EJK62404.1| (hypothetical protein THAOC_16984 [Thalassiosira oceanica])

HSP 1 Score: 327.791 bits (839), Expect = 2.839e-109
Identity = 155/209 (74.16%), Postives = 181/209 (86.60%), Query Frame = 0
Query:   72 LVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAMEPESPNA 280
            + MMPIGVPKVAYRVPG   A+WVDIYNRLYRERIIFLG EIDD+ ANQIIGV+LYLD+EDSS+PIY+YIN PGGSVIAGLAI+D MQLI+SE++TIN+G+AASMASF+L+AG KGKRLALP SR+MIHQPMGGAQGQA+DIKVEAAQI+RI+ NLV MYS  TG+ T+QI  DLDRDN++SAQ ALE+GLID ++E      P  P A
Sbjct:   57 ITMMPIGVPKVAYRVPGGAGAEWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDEEDSSKPIYLYINSPGGSVIAGLAIFDAMQLIKSEVITINLGLAASMASFILSAGSKGKRLALPSSRIMIHQPMGGAQGQAQDIKVEAAQIMRIRDNLVKMYSMFTGQTTDQITKDLDRDNFMSAQTALEYGLIDRVLE-----RPSGPGA 260          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|399949673|gb|AFP65331.1| (ATP-dependent, proteolytic subunit (nucleomorph) [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 323.939 bits (829), Expect = 1.416e-108
Identity = 149/210 (70.95%), Postives = 184/210 (87.62%), Query Frame = 0
Query:   61 SSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELE 270
            S +  +  + ++ MMPIGVPKVAYRVPG+ SADWVDIYNRLYRERIIFLGQEIDD+ ANQII V+LYLD ED+S+PIY+YIN PGGSVI+GLA+YD M+ I+SE+VTIN+G+AASMASF+LAAG+KGKRLALPHSR+MIHQPMGGAQGQA DIKVEA QILRI+K+L   Y++MTGR  E+++ D+DRDN++SA EA+E+GLID ++E  
Sbjct:   25 SKKIHKKNSATIKMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMYDTMRHIKSEVVTINVGLAASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQQILRIRKSLTEDYAQMTGRPYEKVLQDMDRDNFMSAYEAVEYGLIDRVIEFN 234          
BLAST of EWM25441.1 vs. NCBI_GenBank
Match: gi|676395251|ref|XP_009040903.1| (hypothetical protein AURANDRAFT_32730 [Aureococcus anophagefferens] >gi|323448447|gb|EGB04345.1| hypothetical protein AURANDRAFT_32730 [Aureococcus anophagefferens])

HSP 1 Score: 322.398 bits (825), Expect = 1.532e-108
Identity = 148/193 (76.68%), Postives = 178/193 (92.23%), Query Frame = 0
Query:   75 MPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIV 267
            MPIGVPKVAYRVPG+ SADW+DIYNRLYRERIIFLGQEIDD+ ANQIIGV+LYLD EDS++PIY+YINCPGGSVIAGLAI+D M  I+S++VTINIG++ASMASFLL  G KG RLALP+SRVMIHQPMGGAQGQAEDIKVEAAQI+RIK+NLV +Y+ MTG+  +QI++DLDRDN++SAQEA ++G+ID+++
Sbjct:    1 MPIGVPKVAYRVPGAPSADWIDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYLYINCPGGSVIAGLAIFDTMNHIKSKVVTINIGLSASMASFLLCGGTKGSRLALPNSRVMIHQPMGGAQGQAEDIKVEAAQIIRIKENLVKLYAMMTGQTQDQIILDLDRDNFMSAQEACDYGIIDKVI 193          
The following BLAST results are available for this feature:
BLAST of EWM25441.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107202|gb|EWM25441.1|0.000e+0100.00atp-dependent clp protease proteolytic subunit [Na... [more]
gi|873231363|emb|CEM08610.1|1.217e-11978.04unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210532135|dbj|GAX09294.1|2.185e-11272.40hypothetical protein FisN_17Lh042 [Fistulifera sol... [more]
gi|1072227581|gb|OEU12320.1|1.105e-11073.68ATP-dependent Clp protease proteolytic subunit [Fr... [more]
gi|1210527998|dbj|GAX13113.1|1.730e-11075.86hypothetical protein FisN_17Hh042 [Fistulifera sol... [more]
gi|224007247|ref|XP_002292583.1|3.287e-11075.00catalytic subunit of clp protease [Thalassiosira p... [more]
gi|219124070|ref|XP_002182335.1|2.076e-10972.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397613755|gb|EJK62404.1|2.839e-10974.16hypothetical protein THAOC_16984 [Thalassiosira oc... [more]
gi|399949673|gb|AFP65331.1|1.416e-10870.95ATP-dependent, proteolytic subunit (nucleomorph) [... [more]
gi|676395251|ref|XP_009040903.1|1.532e-10876.68hypothetical protein AURANDRAFT_32730 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5290rna5290Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications