rna5287, rna5287 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5287
Unique Name	rna5287
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2300
Alignment location	CM002465.1:626321..627933 +

Link to JBrowse

Properties


Property Name	Value
Product	subfamily member 9
Orig transcript id	gnl\|cribi\|Naga_100005g80.6637.mrna
Orig protein id	gnl\|cribi\|Naga_100005g80.6637
Gene	DNJC9
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:626321..627933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
DNJC9	gene5107	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5287	rna5287-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25343.1	cds5274	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:626321..627933+
coding sequence from alignment at CM002465.1:626321..627933+

mRNA sequence

>rna5287 ID=rna5287|Name=rna5287|organism=Nannochloropsis gaditana|type=mRNA|length=2300bp
GAGACGGTGGTGGTCCTTACGGCTCGATACTCAGAGCGAAAGGGCAGCTC
TGATGATCTGGAGGGAAAAGCGTCTCATGCCTTTTTTGTGAAAACGATAG
AGCAAAGACAGCATGGCCAATGCTTCGACGACAGAGGCAGGGAGGCGGTT
GCGGGATATGATGCAAGTTTTTTACAAGAAGGCCCCTCGTTTGCGTCCCA
ATCTGGTTCCCAAAAGCTGTAAGCCTTTCATGGACGTCATGGCTATGTGC
AGCACCGGGTCCCAGCGTGACAACGTGCAGCGCATTTTAGAGCAGCAGAA
AAGCAAGTTGGTTAGAAGAGCAATCGGGGCAGATGGGGACGAGGACAGGC
ACCTGACTCTCAAGGCAAACGTGAACCTTGACAAGGGCACTTGCAATATT
TACGCCGCCACGTATGTGAGCCAAGTTGAGGCGGACCTTTACAGCACAGA
GAGTATCTTGAACATGCATAGTCGTGGAGATAATGATGAGTTGCGTATTC
GTTTGGAATACTTTTTATCGGTCAATGGATATGACGGAGGCAAGGCTGAT
ATGATTGAAGCACAGGAAGTATACAGCCTAGCCTACGCGATCATCATTTG
CCTGAGTGCTGCACCATTCAGAGCCACGGTAGGGCCTAAAGGCTTGGCAC
TGCCCCTTTCTGGCGAAGTGGATGCGGGTGCGGTAATCTTGGCCTTATTC
GGGGATGACGCACACCTTATTGGGTACAACGAGAGGACTGATCCGCCAAG
AGCGAGATAATTCACATATCAAAGAGCATATTATAAGATAGATTGTCAAA
AATCGTCAGCTAAATAACCGTTTAGCTTCTTAATTACGACGGTGTCAGCA
GGGTCATTCTTTTACATCATTGGAATACCAGACCATGCTGTGGTCAAAAT
TTGTCGAAAATGCTTTGAGGCCCTTTGTATGGTACAACTTTTTCATCGTC
CGGGTAGGGGTCAATACTTGAGACGTCCATTGGATCGCGAATAGAGGGAT
GGAAGGGGGCAGAAATGGTCTTCCGACGCAGTTGACTCCAATCCAGCCCT
GAAAAGAAGGGATGCTCCATTATCTCTGTTGGCCCTCCGAGGAGATTTCC
AAGGCGAACGGCAGGGTTTGGGCTCATCAGGCTCTTGATCAAGTCGATAC
AATCGTTGTCCAGCCCTCGCGGAAATGTGAGGTTTGTGGAAGAATGTATT
ATTTTCTTGAAGATTTCGTCGTGTTGCTCGTCTTGAAAGGGCGTTCGGCC
GACCATAAGCTCATAGACGAGGCAACCGAAAGCCCAGTAATCTACGCTCT
TATCATGGCCGCGGCTCAAAACCAATTCAGGTGCAAGATACTCGGGTGTG
CCACACAATGTAAAAGTCTTGAGCTGCAGGTTGCCGTTCTTCTGGAAAGG
AACAGTCTTGGCGAAGCCGAAATCAATTATCTTGAGGTATCCTTGGGAGT
CAAGCAATAGATTTTCGGGTTTAAGGTCACGGTATGCAACATCTCTCTTG
TGGATGTAATCCAAAGCGGACAGCACACAGGCTGCATAGAACTGGGTGTG
TACTTTCAGAAATCCTCCAAATTTTGTTCTCGGAAGTGAATCAAAACGAT
CATATATGTACATCCAAAGTTCTCCTCCTTGCACCAATTCCATAAGCATA
TAAATCTGATCGGCGTCCTTAAGCGTGCCGAGAAGTTTGAGGATGAAGGG
ATGATTGCATGATGACAAGATGTTTTTCTCGTTCATGATATTCCGTTCCT
GATGGCAAGCGACAATATGGGCTTTTTGCATGCACTTCAGTGCTCCCATC
GCGTGCTGTATTTTTGGGTTCGAAACATCTGGACATGAGTCCTCGAATAT
CCTGCTCTCTTTGCGATCTCCTTCTAATTGTCATCGTCAAAATGAATGGA
AACGCTAAGGCATCGAGGAGCTTCGCATCTTTCTCAGTGCTTATTCTTGA
ATTCAAAAAGACGCATGATACTCTAGGGCAGAATAGAGCGCATATCTTAT
AGAATACCCTTACCGAGTTTACAAACTGTACAAGCTTTACGCGCCCAAAC
GTCCCTGTCCCAAGCGTCCGCTGCTGCATGAAAAGGAGAAGAATGATTCT
TACGTATATTGTTTTAGGTGACGCAATTCAGTAACACGATATAAAAGTAT
AAATTGAATACACCTACCACATTCAGATCCTCCATCTTGAAGCTGCTCTG
CGACACATCTTCACCAGCTGCGCTAGGTGCGGCACTCTCAACATTATAAA
CGGGTTTCGTTTCAGATGCGATGCCGACAACCTCTTGTGACTGTCTTCGC

protein sequence of rna5287

>rna5287-protein ID=rna5287-protein|Name=rna5287|organism=Nannochloropsis gaditana|type=polypeptide|length=362bp
MGALEAMTTPQAQVAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTC
HPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQS
EQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSL
VIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAEVRKDLKRKKRAE
KEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSFLQSLEEKYGKGKKP
KDRGHRRCGFRAPAGLPLQKESGGATRLAPQIWRATHVLRRARRVDISVV
GARGHFVARSVITTPWRSMGWPGVYTRWKTARGRSRVGCATVDELIGWNS
LSVSLKHALIDD

mRNA from alignment at CM002465.1:626321..627933+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5287 ID=rna5287|Name=rna5287|organism=Nannochloropsis gaditana|type=mRNA|length=1613bp|location=Sequence derived from alignment at CM002465.1:626321..627933+ (Nannochloropsis gaditana)
ATGGGGGCATTGGAAGCAATGACGACCCCTCAAGCGCAGGTTGCCAAGGC
AttcgggaaaaaaaagacgcTTTACGAGATCCTAGACGTCGCTAAGGATG
CGGCCTCGGCGGTAATTCGCAAGGCTTACTTCAAAATGGCATTGACATGC
GTAAGTAAGGAGGCAACGTTGGCGAACAAAAGAAAAATTGGCTTTGTTTT
TCATAAATTCGAACGCCAACTGAAAGCGAGGCTGAAAGCGTACCCAATTT
TGCGGAAGCATAGGcttgacgagggaggagacggagacagcaaggagaag
gagcgccAGCACCGCTTTACATGACCCACTGAACTTCTTACCGAGATGTC
TTCTTATTACCATTCCTTTTTCAACGTGGGGCTTCTTCCATTTCGTAGCA
CCCCGACAAGTGCCCCGAAGACCCCGAGGCCACCGCGCGCTTCCAAGCCC
TCTCCATCGTCCATGCAACTCTAAGTGACGCCGACAAACGCCGCAACTAC
GACGAAACGGGTGAGATCGGATCGGAGGACGCTGAGCTCAACCAAAGCGA
GCAAGAGTGGTACGACTACTGGCGCGCGCTCTTCCCCACCGTGACGGTGG
AGAAGATTGACCGGTTCAAGGAGGAGTAccgggaaagcgaggaggaggcc
agggacGTCTTGAAGGCCTACGAAGAGGCGCAGGGAAAGATGAGTCTAGT
GATCGACAGCGTCATGCTCGCcacggatgaggacgagggacGTTTCCGAA
AGATGATTGAGGAAGCGATTGTGAATAAGAGGGTCAAGCGCTTGAAATGT
TTTAAGGCCGAGGTACGGAAGGACCTCAAGCGAAAGAAGCGGGCCGAAAA
GGTAAAAGTGAAAGCACGCTGTGTACATGTGCCATGGCCTCAGAAAGGCA
TTCAAGACAGATTGTCGTCAAGACACCTTGCTTAGCATCCTGctgtttct
ccctcttctcagCCCCCCACAATGCACAATCGTTGACCCGAACGCTCGCT
CTTTCCCATTACGACGGAATGTCCCTCTTGACCTTCCATGAGCacaggag
gcgaaggaggcagaggagctCTTGGAAGCCATCCAGGCCCGAAGAGGCCC
CGACGCCCTGGCGACCATGGGCCGCGACAGACAGCAGCAGATGTCGAGCT
TCTTGCAATCGCTTGAGGAGAAGTATGGGAAAGGCAAGAAGGTAGGCGGC
AGTGGCTGTAAGGAGgctggtgggaaagggagaaagagggatggaggggc
gcGAGAGGGCGCGCGAGGCAGCCAAAGGACCGAGGACATCGACGATGCGG
ATTTCGAGCGCCTGCGGGACTCCCTCTGCAAaaagaaagtggaggagcgA
CGAGACTAGCACCACAAATCTGGAGAGCTActcacgtcctccgtcgAGCA
CGGCGTGTTGATATCTCTGTCGTGGGCGCAAGAGGACACTTTGTGGCGCG
ATCAGTCATCACCACCCCCTGGCGTTCGATGGGTTGGCCTGGTGTGTACA
CACGCTGGAAGACAGCAAGGGGCCGGTCGCGGGTAGGATGTGCTACTGTG
GATGAACTGATAGGATGGAACAGCTTGAGTGTGAGCTTGAAACATGCTCT
GATAGATGACTAA

Coding sequence (CDS) from alignment at CM002465.1:626321..627933+

>rna5287 ID=rna5287|Name=rna5287|organism=Nannochloropsis gaditana|type=CDS|length=4356bp|location=Sequence derived from alignment at CM002465.1:626321..627933+ (Nannochloropsis gaditana)
ATGGGGGCATTGGAAGCAATGACGACCCCTCAAGCGCAGGTTGCCAAGGC
AttcgggaaaaaaaagacgcTTTACGAGATCCTAGACGTCGCTAAGGATG
CGGCCTCGGCGGTAATTCGCAAGGCTTACTTCAAAATGGCATTGACATGC
CACCCCGACAAGTGCCCCGAAGACCCCGAGGCCACCGCGCGCTTCCAAGC
CCTCTCCATCGTCCATGCAACTCTAAGTGACGCCGACAAACGCCGCAACT
ACGACGAAACGGGTGAGATCGGATCGGAGGACGCTGAGCTCAACCAAAGC
GAGCAAGAGTGGTACGACTACTGGCGCGCGCTCTTCCCCACCGTGACGGT
GGAGAAGATTGACCGGTTCAAGGAGGAGTAccgggaaagcgaggaggagg
ccagggacGTCTTGAAGGCCTACGAAGAGGCGCAGGGAAAGATGAGTCTA
GTGATCGACAGCGTCATGCTCGCcacggatgaggacgagggacGTTTCCG
AAAGATGATTGAGGAAGCGATTGTGAATAAGAGGGTCAAGCGCTTGAAAT
GTTTTAAGGCCGAGGTACGGAAGGACCTCAAGCGAAAGAAGCGGGCCGAA
AAGgaggcgaaggaggcagaggagctCTTGGAAGCCATCCAGGCCCGAAG
AGGCCCCGACGCCCTGGCGACCATGGGCCGCGACAGACAGCAGCAGATGT
CGAGCTTCTTGCAATCGCTTGAGGAGAAGTATGGGAAAGGCAAGAAGCCA
AAGGACCGAGGACATCGACGATGCGGATTTCGAGCGCCTGCGGGACTCCC
TCTGCAAaaagaaagtggaggagcgACGAGACTAGCACCACAAATCTGGA
GAGCTActcacgtcctccgtcgAGCACGGCGTGTTGATATCTCTGTCGTG
GGCGCAAGAGGACACTTTGTGGCGCGATCAGTCATCACCACCCCCTGGCG
TTCGATGGGTTGGCCTGGTGTGTACACACGCTGGAAGACAGCAAGGGGCC
GGTCGCGGGTAGGATGTGCTACTGTGGATGAACTGATAGGATGGAACAGC
TTGAGTGTGAGCTTGAAACATGCTCTGATAGATGACTAAATGGGGGCATT
GGAAGCAATGACGACCCCTCAAGCGCAGGTTGCCAAGGCAttcgggaaaa
aaaagacgcTTTACGAGATCCTAGACGTCGCTAAGGATGCGGCCTCGGCG
GTAATTCGCAAGGCTTACTTCAAAATGGCATTGACATGCCACCCCGACAA
GTGCCCCGAAGACCCCGAGGCCACCGCGCGCTTCCAAGCCCTCTCCATCG
TCCATGCAACTCTAAGTGACGCCGACAAACGCCGCAACTACGACGAAACG
GGTGAGATCGGATCGGAGGACGCTGAGCTCAACCAAAGCGAGCAAGAGTG
GTACGACTACTGGCGCGCGCTCTTCCCCACCGTGACGGTGGAGAAGATTG
ACCGGTTCAAGGAGGAGTAccgggaaagcgaggaggaggccagggacGTC
TTGAAGGCCTACGAAGAGGCGCAGGGAAAGATGAGTCTAGTGATCGACAG
CGTCATGCTCGCcacggatgaggacgagggacGTTTCCGAAAGATGATTG
AGGAAGCGATTGTGAATAAGAGGGTCAAGCGCTTGAAATGTTTTAAGGCC
GAGGTACGGAAGGACCTCAAGCGAAAGAAGCGGGCCGAAAAGgaggcgaa
ggaggcagaggagctCTTGGAAGCCATCCAGGCCCGAAGAGGCCCCGACG
CCCTGGCGACCATGGGCCGCGACAGACAGCAGCAGATGTCGAGCTTCTTG
CAATCGCTTGAGGAGAAGTATGGGAAAGGCAAGAAGCCAAAGGACCGAGG
ACATCGACGATGCGGATTTCGAGCGCCTGCGGGACTCCCTCTGCAAaaag
aaagtggaggagcgACGAGACTAGCACCACAAATCTGGAGAGCTActcac
gtcctccgtcgAGCACGGCGTGTTGATATCTCTGTCGTGGGCGCAAGAGG
ACACTTTGTGGCGCGATCAGTCATCACCACCCCCTGGCGTTCGATGGGTT
GGCCTGGTGTGTACACACGCTGGAAGACAGCAAGGGGCCGGTCGCGGGTA
GGATGTGCTACTGTGGATGAACTGATAGGATGGAACAGCTTGAGTGTGAG
CTTGAAACATGCTCTGATAGATGACTAAATGGGGGCATTGGAAGCAATGA
CGACCCCTCAAGCGCAGGTTGCCAAGGCAttcgggaaaaaaaagacgcTT
TACGAGATCCTAGACGTCGCTAAGGATGCGGCCTCGGCGGTAATTCGCAA
GGCTTACTTCAAAATGGCATTGACATGCCACCCCGACAAGTGCCCCGAAG
ACCCCGAGGCCACCGCGCGCTTCCAAGCCCTCTCCATCGTCCATGCAACT
CTAAGTGACGCCGACAAACGCCGCAACTACGACGAAACGGGTGAGATCGG
ATCGGAGGACGCTGAGCTCAACCAAAGCGAGCAAGAGTGGTACGACTACT
GGCGCGCGCTCTTCCCCACCGTGACGGTGGAGAAGATTGACCGGTTCAAG
GAGGAGTAccgggaaagcgaggaggaggccagggacGTCTTGAAGGCCTA
CGAAGAGGCGCAGGGAAAGATGAGTCTAGTGATCGACAGCGTCATGCTCG
CcacggatgaggacgagggacGTTTCCGAAAGATGATTGAGGAAGCGATT
GTGAATAAGAGGGTCAAGCGCTTGAAATGTTTTAAGGCCGAGGTACGGAA
GGACCTCAAGCGAAAGAAGCGGGCCGAAAAGgaggcgaaggaggcagagg
agctCTTGGAAGCCATCCAGGCCCGAAGAGGCCCCGACGCCCTGGCGACC
ATGGGCCGCGACAGACAGCAGCAGATGTCGAGCTTCTTGCAATCGCTTGA
GGAGAAGTATGGGAAAGGCAAGAAGCCAAAGGACCGAGGACATCGACGAT
GCGGATTTCGAGCGCCTGCGGGACTCCCTCTGCAAaaagaaagtggagga
gcgACGAGACTAGCACCACAAATCTGGAGAGCTActcacgtcctccgtcg
AGCACGGCGTGTTGATATCTCTGTCGTGGGCGCAAGAGGACACTTTGTGG
CGCGATCAGTCATCACCACCCCCTGGCGTTCGATGGGTTGGCCTGGTGTG
TACACACGCTGGAAGACAGCAAGGGGCCGGTCGCGGGTAGGATGTGCTAC
TGTGGATGAACTGATAGGATGGAACAGCTTGAGTGTGAGCTTGAAACATG
CTCTGATAGATGACTAAATGGGGGCATTGGAAGCAATGACGACCCCTCAA
GCGCAGGTTGCCAAGGCAttcgggaaaaaaaagacgcTTTACGAGATCCT
AGACGTCGCTAAGGATGCGGCCTCGGCGGTAATTCGCAAGGCTTACTTCA
AAATGGCATTGACATGCCACCCCGACAAGTGCCCCGAAGACCCCGAGGCC
ACCGCGCGCTTCCAAGCCCTCTCCATCGTCCATGCAACTCTAAGTGACGC
CGACAAACGCCGCAACTACGACGAAACGGGTGAGATCGGATCGGAGGACG
CTGAGCTCAACCAAAGCGAGCAAGAGTGGTACGACTACTGGCGCGCGCTC
TTCCCCACCGTGACGGTGGAGAAGATTGACCGGTTCAAGGAGGAGTAccg
ggaaagcgaggaggaggccagggacGTCTTGAAGGCCTACGAAGAGGCGC
AGGGAAAGATGAGTCTAGTGATCGACAGCGTCATGCTCGCcacggatgag
gacgagggacGTTTCCGAAAGATGATTGAGGAAGCGATTGTGAATAAGAG
GGTCAAGCGCTTGAAATGTTTTAAGGCCGAGGTACGGAAGGACCTCAAGC
GAAAGAAGCGGGCCGAAAAGgaggcgaaggaggcagaggagctCTTGGAA
GCCATCCAGGCCCGAAGAGGCCCCGACGCCCTGGCGACCATGGGCCGCGA
CAGACAGCAGCAGATGTCGAGCTTCTTGCAATCGCTTGAGGAGAAGTATG
GGAAAGGCAAGAAGCCAAAGGACCGAGGACATCGACGATGCGGATTTCGA
GCGCCTGCGGGACTCCCTCTGCAAaaagaaagtggaggagcgACGAGACT
AGCACCACAAATCTGGAGAGCTActcacgtcctccgtcgAGCACGGCGTG
TTGATATCTCTGTCGTGGGCGCAAGAGGACACTTTGTGGCGCGATCAGTC
ATCACCACCCCCTGGCGTTCGATGGGTTGGCCTGGTGTGTACACACGCTG
GAAGACAGCAAGGGGCCGGTCGCGGGTAGGATGTGCTACTGTGGATGAAC
TGATAGGATGGAACAGCTTGAGTGTGAGCTTGAAACATGCTCTGATAGAT
GACTAA

Synonyms

Publications