EWM25343.1, cds5274 (CDS) Nannochloropsis gaditana

Overview
NameEWM25343.1
Unique Namecds5274
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:626321..626470 +
Alignment locationCM002465.1:626719..627171 +
Alignment locationCM002465.1:627368..627511 +
Alignment locationCM002465.1:627592..627933 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25343.1
Productsubfamily member 9
Orig transcript idgnl|cribi|Naga_100005g80.6637.mrna
GeneDNJC9
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:626321..626470 +
CM002465.1supercontigCM002465.1:626719..627171 +
CM002465.1supercontigCM002465.1:627368..627511 +
CM002465.1supercontigCM002465.1:627592..627933 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018253DnaJ_domain_CS
IPR001623DnaJ_domain
Homology
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|585107104|gb|EWM25343.1| (subfamily member 9 [Nannochloropsis gaditana])

HSP 1 Score: 743.421 bits (1918), Expect = 0.000e+0
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 0
Query:    1 MGALEAMTTPQAQVAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAEVRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSFLQSLEEKYGKGKKPKDRGHRRCGFRAPAGLPLQKESGGATRLAPQIWRATHVLRRARRVDISVVGARGHFVARSVITTPWRSMGWPGVYTRWKTARGRSRVGCATVDELIGWNSLSVSLKHALIDD 362
            MGALEAMTTPQAQVAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAEVRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSFLQSLEEKYGKGKKPKDRGHRRCGFRAPAGLPLQKESGGATRLAPQIWRATHVLRRARRVDISVVGARGHFVARSVITTPWRSMGWPGVYTRWKTARGRSRVGCATVDELIGWNSLSVSLKHALIDD
Sbjct:    1 MGALEAMTTPQAQVAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAEVRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSFLQSLEEKYGKGKKPKDRGHRRCGFRAPAGLPLQKESGGATRLAPQIWRATHVLRRARRVDISVVGARGHFVARSVITTPWRSMGWPGVYTRWKTARGRSRVGCATVDELIGWNSLSVSLKHALIDD 362          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|225708218|gb|ACO09955.1| (DnaJ homolog subfamily C member 9 [Osmerus mordax])

HSP 1 Score: 176.407 bits (446), Expect = 1.062e-49
Identity = 93/231 (40.26%), Postives = 148/231 (64.07%), Query Frame = 0
Query:   20 KKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAE-VRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSF---LQSLEEKYGK 246
            K   LYE++ V KDA+ A +R+ Y+K++LT HPD+ PED +AT +FQAL  V+A LSD D+R  YDE G +  E   ++Q+ + W +YWR +FP +T++ I  F++ Y+ ++EE +D+ + YEE+QG M+ +++SV+ AT EDEGRFR +++ AI    +   K F  E   K   RK++A+KE KEAE++ + +        +A + R +Q   + F   + +LE+KY K
Sbjct:   12 KTSNLYEVIGVTKDASEAEVRRGYYKISLTVHPDRAPEDEQATVKFQALGKVYAVLSDKDQRAIYDEQGIVDEESDSIDQN-RNWEEYWRTMFPKITLQDILDFEKSYKYTDEEKQDLKRVYEESQGDMNKIMESVLCATQEDEGRFRDILQGAIDAGELTAYKGFTHESATKKKSRKRKAQKEEKEAEQMQKEMGMTSESSLVAMIQRKQQANQTEFNYLIANLEDKYCK 241          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|1173958889|gb|OQS05185.1| (hypothetical protein THRCLA_02636 [Thraustotheca clavata])

HSP 1 Score: 168.703 bits (426), Expect = 1.650e-46
Identity = 108/239 (45.19%), Postives = 151/239 (63.18%), Query Frame = 0
Query:    7 MTTPQAQVAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAEVRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSFLQSLEEKYG 245
            MTT   ++ + FG++  LY IL V K   ++ ++ AY K AL  HPDK P+DPEAT +FQ L  +H++LS+ D R  YDETGE+  E  E   S ++W +YWRALFP VTV+ I+ F+  YR+SEEEA+DVLKAYE+ +GKM  ++D +ML+T+ D  RF  +I+ AI  + V  +     +  K  +  K+AE EAK AEEL+  I+ +    ALA     RQQ  +S L +LE KY 
Sbjct:    1 MTTTMEKIEQHFGERD-LYAILGVKKTCTASELKTAYRKTALKFHPDKNPDDPEATTKFQLLCTIHSSLSNPDLRAVYDETGELEVEATE-TASFKDWLEYWRALFPKVTVKDIENFETSYRDSEEEAQDVLKAYEKYKGKMQSILDVIMLSTENDIERFSDIIQRAIDAEEVP-MYPAFKKKPKAKRNNKKAEAEAKAAEELMAKIRGKADGGALAK----RQQGFASLLSNLEAKYA 232          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|742202697|ref|XP_010893939.1| (PREDICTED: dnaJ homolog subfamily C member 9 [Esox lucius] >gi|742202701|ref|XP_010893940.1| PREDICTED: dnaJ homolog subfamily C member 9 [Esox lucius])

HSP 1 Score: 164.466 bits (415), Expect = 4.567e-45
Identity = 92/234 (39.32%), Postives = 148/234 (63.25%), Query Frame = 0
Query:   20 KKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAE-VRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQ----MSSFLQSLEEKYGKGK 248
            K   LY+++ V KDA+ A IR+ Y+K++L  HPD+   D +ATA+FQAL  V+A LSDAD+R  YDE G I  E   +++ ++ W +YWR +FP +T++ I  F++ Y++SEEE  D+++AYEE +G M  ++++V+ AT EDE R R +++ A+ +K +   + F  E  +K   RK++A+KE KEAEE+ + +      D+L  M +  Q+      ++ +  LE KY K K
Sbjct:   12 KTSNLYDVIGVTKDASEAEIRRGYYKVSLQVHPDRATGDEQATAKFQALGKVYAVLSDADQRAIYDEQGVIDEESDSVDR-DRNWEEYWRTMFPKITLQDILDFEKSYKDSEEEKHDLMRAYEEHKGDMDKIMENVLCATQEDEPRIRAILQCALDSKELPPHRAFTNESAKKKSVRKRKADKERKEAEEMQKEM-GLDSEDSLVAMIKKNQKSKEAGFNNLMDDLEAKYCKKK 243          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|673023174|ref|XP_008865548.1| (hypothetical protein H310_03455 [Aphanomyces invadans] >gi|574478776|gb|ETW05771.1| hypothetical protein H310_03455 [Aphanomyces invadans])

HSP 1 Score: 164.466 bits (415), Expect = 9.394e-45
Identity = 97/242 (40.08%), Postives = 140/242 (57.85%), Query Frame = 0
Query:    7 MTTPQAQVAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAE---VRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSFLQSLEEKYG 245
            M++   ++   FG    LY IL V K A  + ++ AY K AL  HPDK  ++ +AT +FQ L  +HA LS+AD R  YDETGEI ++ +   +S  +W  YWRALFP +T   I  F+  YR S EE++D+L+AY++ +GK   ++D V+LA DED  RF  +I+ AI +  V     FK +    +K    +K+ + EAK AE+L+  I+ R G  A+A     R  Q  S L  LE+KY 
Sbjct:    1 MSSTLDRIRAHFGHT-DLYRILHVKKTATESELKTAYRKQALKHHPDKNLDNDDATEKFQLLCTIHAVLSNADSRAVYDETGEIEADSSTDTKSFNDWVAYWRALFPPLTENDITSFEATYRGSAEESKDLLEAYKKHKGKWQNILDVVILARDEDIDRFEDIIQAAIDDGSVPLFPAFKKKPVVAKKSASARKKQDAEAKAAEDLIAQIRGRNGRSAMAK----RSAQFDSLLSKLEDKYA 237          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|669141406|ref|XP_008606265.1| (hypothetical protein SDRG_02454 [Saprolegnia diclina VS20] >gi|530742324|gb|EQC40566.1| hypothetical protein SDRG_02454 [Saprolegnia diclina VS20])

HSP 1 Score: 164.081 bits (414), Expect = 1.213e-44
Identity = 99/224 (44.20%), Postives = 139/224 (62.05%), Query Frame = 0
Query:   14 VAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAEVRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSFL 237
            V  +FG++  LY IL V   A +A ++ AY K AL  HPDK P+D EAT +FQ L  +HA LS  + R  YDETGE+ +E  E + S ++W DYWR LFP VT + I  F++EYR S+EEARDVL AYE+ +GK + ++D VML++D+D  RF K+I+EAI    V     F    +K +K + +++K A EA+   E +   RG  A   + + RQQ  +S L
Sbjct:    9 VEASFGQRD-LYAILGVEASATTAQLKTAYRKKALKYHPDKNPDDDEATTKFQLLCTIHAALSSPELRAVYDETGELETEATETS-SFRDWVDYWRNLFPKVTTKDIQSFEQEYRGSDEEARDVLNAYEKYKGKWTSIMDVVMLSSDDDMDRFSKIIQEAIDANEVPLYPAF---TKKTIKTRSKSKKVAAEAKAAEELLAKIRGNQAGGALAK-RQQGFASLL 226          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|1158922585|ref|XP_020309085.1| (dnaJ homolog subfamily C member 9-like [Oncorhynchus kisutch] >gi|1158922587|ref|XP_020309086.1| dnaJ homolog subfamily C member 9-like [Oncorhynchus kisutch] >gi|1158922589|ref|XP_020309087.1| dnaJ homolog subfamily C member 9-like [Oncorhynchus kisutch])

HSP 1 Score: 162.155 bits (409), Expect = 3.544e-44
Identity = 94/243 (38.68%), Postives = 152/243 (62.55%), Query Frame = 0
Query:   20 KKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAE-VRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQ----MSSFLQSLEEKYGKGKKPKDRGHRR 257
            K   LY+++ V  DA+ A +R+ Y+K++L  HPD+ P D +ATA+FQ L  V+A LSD D+R  YDE G +  E   L+Q ++ W +YWR +FP +T++ I  F++ Y++SEEE  D+++ YEE +G M +++++V+ AT EDE R R +++ AI +K +   K F  E  +K   RK++A+KE KEAEE+ + +      D+L  M +  Q+      ++F+ +LE KY K K+P     R+
Sbjct:   12 KTSNLYDVIGVTNDASEAEVRRGYYKVSLQVHPDRSPGDGQATAKFQTLGKVYAVLSDKDQRAIYDEQGIVDEESDSLDQ-DRNWEEYWRTMFPKITLQDILNFEKSYKDSEEEKHDLMRVYEEHKGDMDMIMENVLCATQEDEPRIRAVLQCAIDSKVLLAHKAFTNESAKKKSSRKRKADKERKEAEEMQKEM-GLNSEDSLVAMIKKNQKSKEAGFNNFMDNLEAKYCK-KRPSSSSGRK 251          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|1168912011|ref|XP_020498731.1| (dnaJ homolog subfamily C member 9 [Labrus bergylta])

HSP 1 Score: 161.77 bits (408), Expect = 4.656e-44
Identity = 98/242 (40.50%), Postives = 149/242 (61.57%), Query Frame = 0
Query:   20 KKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCF-KAEVRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQ----QMSSFLQSLEEKYGKGKKPKDRGHR 256
            K + LYE+L V K+AA A IR++Y+K++L  HPD+ PEDP AT +FQ L  ++A LSDA++R  YDE G +  E   L+Q ++ W DYWR LFP +TV+ I  F+++Y+ S+EE +D+++ Y + QG M  +  S +  + EDE R   +I+ AI N+ V     F + + +K   R+KRA++E +EAEE+ + +      D+L  M + RQQ      +SFL  LE KY K  +   +G R
Sbjct:   12 KTQNLYEVLGVNKEAAEADIRRSYYKVSLRVHPDRAPEDPLATEKFQVLGKLYAVLSDAEQRAVYDEQGLVDEESDALSQ-DRCWEDYWRLLFPKITVQDILEFEKKYKGSDEERQDLIQLYVQHQGDMDAITASALCCSQEDEPRLCGIIQAAIQNEEVTAFPAFTQEKEKKKKARRKRADRERQEAEEMQKEMGLGDEDDSLVMMLKQRQQSREKNFNSFLSDLEAKYSKKGEKSQKGKR 252          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|1211273333|ref|XP_021420518.1| (dnaJ homolog subfamily C member 9-like [Oncorhynchus mykiss] >gi|642125623|emb|CDQ61431.1| unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 161.77 bits (408), Expect = 4.775e-44
Identity = 93/243 (38.27%), Postives = 152/243 (62.55%), Query Frame = 0
Query:   20 KKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAE-VRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQ----MSSFLQSLEEKYGKGKKPKDRGHRR 257
            K   LY+++ V  DA+ A +R+ Y+K++L  HPD+ P D +ATA+FQ L  V+A LSD D+R  YDE G +  E   L+Q ++ W +YWR +FP +T++ I  F++ Y++SEEE  D+++ YEE +G M +++++V+ AT EDE R R +++ AI +K +   K F  E  +K   RK++A+KE KEAEE+ + +      D+L  M +  Q+      ++F+ ++E KY K K+P     R+
Sbjct:   12 KTSNLYDVIGVTNDASEAEVRRGYYKVSLQVHPDRSPGDGQATAKFQTLGKVYAVLSDKDQRAIYDEQGIVDEESDSLDQ-DRNWEEYWRTMFPKITLQDILNFEKSYKDSEEEKHDLMRVYEEHKGDMDMIMENVLCATQEDEPRIRAVLQCAIDSKVLPAHKAFTNESAKKKSSRKRKADKERKEAEEMQKEM-GLNSEDSLVAMIKKNQKSKEAGFNNFMDNMEAKYCK-KRPSSSSGRK 251          
BLAST of EWM25343.1 vs. NCBI_GenBank
Match: gi|929274236|ref|XP_014013821.1| (PREDICTED: dnaJ homolog subfamily C member 9 [Salmo salar] >gi|929274238|ref|XP_014013822.1| PREDICTED: dnaJ homolog subfamily C member 9 [Salmo salar])

HSP 1 Score: 161.384 bits (407), Expect = 7.389e-44
Identity = 93/243 (38.27%), Postives = 152/243 (62.55%), Query Frame = 0
Query:   20 KKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAE-VRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQ----MSSFLQSLEEKYGKGKKPKDRGHRR 257
            K   LY+++ V  DA+ A +R+ Y+K++L  HPD+ P D +ATA+FQ L  V+A LS+ D+R  YDE G +  E   L+Q ++ W +YWR +FP +T++ I  F++ Y++SEEE  D+++ YEE +G M +++++V+ AT EDE R R +++ AI +K +   K F  E  +K   RK++A+KE KEAEE+ + +      D+L  M +  Q+      ++F+ +LE KY K K+P     R+
Sbjct:   12 KTSNLYDVIGVTNDASEAEVRRGYYKVSLQVHPDRSPGDGQATAKFQTLGKVYAVLSNKDQRAIYDEQGIVDEESDSLDQ-DRNWEEYWRTMFPKITLQDILNFEKSYKDSEEEKHDLMRVYEEHKGDMDMIMENVLCATQEDEPRIRAILQCAIDSKELLAHKAFTNESAKKKSSRKRKADKERKEAEEMQKEM-GLNSEDSLVAMIKKNQKSKEAGFNNFMDNLEAKYCK-KRPSSSSGRK 251          
The following BLAST results are available for this feature:
BLAST of EWM25343.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107104|gb|EWM25343.1|0.000e+0100.00subfamily member 9 [Nannochloropsis gaditana][more]
gi|225708218|gb|ACO09955.1|1.062e-4940.26DnaJ homolog subfamily C member 9 [Osmerus mordax][more]
gi|1173958889|gb|OQS05185.1|1.650e-4645.19hypothetical protein THRCLA_02636 [Thraustotheca c... [more]
gi|742202697|ref|XP_010893939.1|4.567e-4539.32PREDICTED: dnaJ homolog subfamily C member 9 [Esox... [more]
gi|673023174|ref|XP_008865548.1|9.394e-4540.08hypothetical protein H310_03455 [Aphanomyces invad... [more]
gi|669141406|ref|XP_008606265.1|1.213e-4444.20hypothetical protein SDRG_02454 [Saprolegnia dicli... [more]
gi|1158922585|ref|XP_020309085.1|3.544e-4438.68dnaJ homolog subfamily C member 9-like [Oncorhynch... [more]
gi|1168912011|ref|XP_020498731.1|4.656e-4440.50dnaJ homolog subfamily C member 9 [Labrus bergylta... [more]
gi|1211273333|ref|XP_021420518.1|4.775e-4438.27dnaJ homolog subfamily C member 9-like [Oncorhynch... [more]
gi|929274236|ref|XP_014013821.1|7.389e-4438.27PREDICTED: dnaJ homolog subfamily C member 9 [Salm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5287rna5287Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications