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Properties
| Property Name | Value |
|---|
| Product | ribosomal rna small subunit methyltransferase nep1 |
| Orig transcript id | gnl|cribi|Naga_100005g75.6693.mrna |
| Orig protein id | gnl|cribi|Naga_100005g75.6693 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:614448..616059 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5283 ID=rna5283|Name=rna5283|organism=Nannochloropsis gaditana|type=mRNA|length=4253bp
AGACATTGACCCGAGTTTCCGCTTCAAACCGTACCATACTCACAGGAAGG
GCATGCGTGTCTCATGAACTTCAATTTCATTCACGGATTCCTGCCCTTTG
TCGCGTTTTCTAACTTCAACTAGTCGGTACTGGCAGCCCCGTGTGCATCG
TCAAGTTTAGGAGCGACGACAGAATGGACCTCGCATGCTTTTCTTCAGGC
GTGTCCTACCGTTGCATTTCAATGGATTGAATATTGAATACATTATAGCA
AAGTTTGTCCTTCAGGTCGATGGCGAGTGCGCGTTCCTACCGCTTCATCG
TCCATCCCGGTCGCACTTCCGCCGTTCTGGCCATCTCTTTGCTAGGTATG
GCCTTGCTAATAGCGACTTCGCGGACGCATGGTCTCCCAGTCAGCACAGC
GACCACACTCGTGAACGCCACAAAGAATATTAGCCTCCATGGTAGGCAAC
CGGTCGAGCAATTAGGCACATTACTGGTGCCTGCGCCGGAAGCGAATTTC
ATTACGTCGGGCGAGCAAAGCGCTGTGGTCCAAGTCACCTTCCCGCGGCC
ATTTCCTTGTGACATTTCGCCCCTAGTGGTAGTGACACCTCGTTTCCACG
TATTGAATCAGGATGAGAGCAAGAGCGACCGTGAGGAAGCAGAGATTGTG
GAAGAAGACAGAGATTTCCTTGTTTTGGCAGCCAGCACCTTCGACGTGGG
GTCTGTGGGTTTTCGGCTTTTCGTTCAGGCCATTGATAGAGGTCGCGTGT
TGCCTTGGCGAGACGCTATGGTCCTCGTGTCATGGGTAGCTTGGGACCCC
GCTGGCTTTCCTCCCGCAGCAAGTGGGGTGGGTACCCAGGGTGGTCAAGT
TCCTGTCCCGCCTGAACCCGCGGAGGATTTCGCCGGGGACGTCGTGATCG
AGTTCCCGCAAGCTTTTTTGGAGCCGCCCGTTCTTGTGGCTACCGTGCGT
GGAAATGGCGAAAGTAGTCGCACAGCTGTCGCCACCGACACCAGAGCAGT
CAAGAATCCGTTGCCCTTCGCCTTGACTTTCTCGAAGGTGACTCAGACCT
TTGCCGTACTCAATGTCTTCAATTTGGGCGAAGCCAGGAGCTGGACGGAC
CTTGTCCACGTGGACTGGCGGGCCTGGAGTGTTAGTCGTGGTAGGGGCGA
CAAGGAGGGCCGGCCAGAGGGCGAGGTGAACTGGGAGAGCGCCTGGACCG
TGCTCCCCGAGCCCGAGGCGACTGTGGGCCTCTCGCACGCCTTCAAGTCG
GAGCCCATCATCCTGGCCAGCATCCTCAACGATTTGGACGGAGAGAGTGT
GTTGACTGGTGATGCCGGTGCTAACCATGTAGGGGGGGGCGAGAACGTTC
CTACGTGGGGGGGGAAGAGGGGTCGATTTAGGCCTGAGGGAGTCCAGCAA
GACGCTCTGCTGGCGGTGCAGGGAAGCGATAGACTTCTAAAGCTTCTAAG
CTATGCCACTGGCTTTTTTCCATCGGAAGCCACGACAAAAATCCGGGCGG
CGCCCAAAGCGTGGGACACGTATGTGCCGACTCTGTACAACATAAGCAAA
GCCTCTTTCGCCGTGAGGGTGGCGCGTGTCTATCAGACAAACCTGTGGAA
AAGCGGTGTTAAGATGGGTTGGGTCGCGCAGAACGCCACGCGCATGTGCT
CGGACAGCTGTCTGGGCCACGGGGTGTGCGTGGAGGGGCGCTGCGAGTGC
GACCGGGGCTGGACAGGGAACGGCAGCTGCTCGACGTGCCTGCCGGGCTA
CTGGGGCCCGACCTGTGCGCCTTGCCTGGGTCGGAACGACACCGGTTTTG
GGGAGAGCGTCTGGTGCTCCGGCCATGGCGTTTGCGACGGCAGTGGCACT
ACTCATGGAAGCGGCGTTTGTATGTGCGAGATAGGCTATGAAGGGAGAGA
CTGTGGGAGTTGTGCGAGCGGGTTTTACCCAGATTTTGCCGGTTCAGGGA
CATGCAGTCTCTGCCCGAAGGTGGGAAACCTGACATGTGCAGACCATGGA
TCGTGCCAGGTGCTTCATGGCAACGGCAGTGACGAAAGGTTTCGGGTCTG
CGTGTGCGACGGTGTATGGGATGGCGAGTACTGCACCGTGTGTCAGCGAG
GCTACACTGGGGAGGCCTGCAATATTCCTTGCCCCGACCTTTGCGCGGGT
CGCGGGAGTTGCGTGCTGGAAGGAAGGCCGTTTCCGCGGCTAGAAGGTGC
CGAGGAAATATCACAGAGTCAAAGGAAGCTTGCCCGCATGGAACTTGAAC
CGGTCTGTCATTGTGACGAGGGATGGGATGACGCCACGCAATGCGGGAGG
TGCGCCCTGGGTTTTTATGGCGAAAACTGTGAAGGTCGGTGTCCAAACTG
TGGCGAACACGGCCGATGCGACGACGGAATCGGGGGCTCGGGGAACTGTA
CCTGCGACAGTGGTTACACACCGCAATCCCTTTGTCAGGACTGCGCCTTT
GGATTTTACTTGCATTTAGGCGAGGGATCTTGCCTTAGCTGTCCAGGGGG
ACCAGAAAGTCCCTGCAGCGGGCACAGTGATCCGCCCTGGCAGTGCCCTG
GTGGCCAGTGTTTCTGCACGGCTGGCTATCACGGGGAGGATTGCAGCAGA
TTGGGAGGAAGCATGAGCTGGGTGGTAGTGCTCTCTGTCATTTTGGGCGC
TGCCCTGGTGTTAGGGTTGCTAGGATTGGGACTACGGACTCACCGACGGT
GGCAAGCAGATAGCGATGATGAAGATACTCACGCTGGCCTTAAAACCCGC
TCGAGGTTCCTAAGGAAAGTGGGTGGTGGCTCGAAGGGCCGAGGCGACAG
GCGGCGAAAGTCTCATGGCCGTCATCGCCATGGCTTGGATCCGGGACTCC
GCAAGAAGCTCTTGGAGCAGTGTCCCGAATTGCGCGGGATGGAGGACGCG
CTCTCCACATTGGGGTCGGACGCCACAGACTGGCTGATCGATTTCGACAA
ATTGGAAGTAGGGACGCGCATTGGGGCGGGCAACTCCTCACTTGTCTATC
GAGGCCTTTTCTTTGACGAGCTGGTGGCCATCAAGAAGCTGCAAGGTCGG
TGCGACCCGGCTTTTTTTGGACTTTTTTTCCAGCAGGAGGCGGAGCTTCT
GTCAAAATTGCACCATCCACACGTTGTGCGCTTTTTTGGAGTGTGCTACC
ACGCTGGGGATTTCTACATCGTCACTGAATATTGCGAAAACACGTTGCAG
CGGCTTTTGCAGCAGTGTTACGCTCAGGGCAAGCGTTTGCTACCCGAACA
CCTGTATAGGGTGGCCTTTCAGGTGGCCAACGGGATGGCATACCTCCATG
CGCGACATGTGGTGCATCGGGACCTCAAGCCTGAAAATATCTTAATAGAT
GAGCGGGGAGACGTCAAGATATGTGATTTTGGGCTTTCCAAATTGTTGAG
CAAAGACAACACACAGATGACGGTGCAGGTGGGGACACCGGCTTTCATGT
GCCCAGAGATGGCGCACGGCTGCTCGGACATGTCGGAGTCCGTGGATGTG
TACTCTTTTGGTGTTCTTCTATGGTCTCTTTGGTCCTGTCGCGACCCTTA
CTGGTATTTAAATGTGACGCCTGTCCAGCTTCTTTCCCGTGTCGTGGCCG
GGCTTCGGCCTCGCATCGATAGCGACATGCCTGTGAAGCTTGCGAATCTA
ATGCAAGAATGCTGGCAGCAGGAGGCGGCGGCCCGCCCGAAGTTTGAAGC
CTTGGTAATTCAGCTTCGGTACCTTTTGAAGAGCTACCAGGGTGCGACTT
TTACATCGGTGGTCGCGCACTCTCAGAGGTTTTCTTTACCCGGTCCTTTC
AAAGCCGTGCCGTCACCTGACAACTCCTATCCATCGTTTTCTAGACTTCA
TAGCAGAGAAATATTAGATGTCGTCGACCAATCGCGAAGGGACGGATGCG
TCCAACAGCCCTCGGAGCAGACCACAGGGGAAAGTATTTCTGAAGGGGGC
GGGAGTAATGCACGTGATATTCTGTGCACCCTATAGGCGAATAGCACATT
TCCTTTAAAACAGTGTGAGCGAGAATACTGAGGTACATACCATATGTACA
TACGAGCAAAAAGAGAAAATTCATACAGCGACTAATGTAGGAATCCCACG
GGACAGCCTTGCTGTGGTCCCTTGTTTGTGCATTTGTTGGTGAAATGTTG
AAATTATTTTACTAGAACGCTGAAAACCAACAACGCTGGATCTGTCTTCA
TCCATGTACACTGGGAAAATATTTGCTTCACAGGGGAGAAATAATCGAAG
ACT back to topprotein sequence of rna5283 >rna5283-protein ID=rna5283-protein|Name=rna5283|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MAEPESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAM
MKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNA
KCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFK
CYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAAR
EAMMTLKLATTCVPVSATLSD back to topmRNA from alignment at CM002465.1:614448..616059+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5283 ID=rna5283|Name=rna5283|organism=Nannochloropsis gaditana|type=mRNA|length=1612bp|location=Sequence derived from alignment at CM002465.1:614448..616059+ (Nannochloropsis gaditana)
GATGCGAAGGGTTGAAAGTAGGATAGTCATAGAGCTGTATAAGGTAATGG
AGGTGGCAATGAGAAGTGGGTTTGCTCTTCTAGCTAATGCTGAAGCCGGA
AAAGTATCTGATGGCCATGCCGTATTTACTGCTACCAGACCTTTCTCCTG
TCGCAGGCTGCTCCGACACAAAATAATCAATTCATTGAATTCAAAGGCAA
CGCGTAATGGCCGAACCCGAGAGCAGCCATGATGTCACAGAGTCTTTGCG
GAACAAAGAGGTTATCACGGTTGTACTTGACAAGGCGTCACTGGAAACAG
TCAAGATGAAGAGCGGGCAGTATTGTCTTCTAAATTGTGACGATCATCAG
GCAATGATGAAAAAAAGTGGGAAAAATCCAGCAGATTATAGACCAGATAT
CCTACATCAGGAGTTATTGGCTTTGTTGGACAGTCCTTTGAATAAAGTGG
GAAAGCTCAAGGTGTATATCCGCTCGTCCTCGAATGTCCTCATCGAGGTC
AACGCAAAATGCCGCATTCCAAGGACCTACAAGCGATTTGCCGGACTTAT
GGGTGCGTACTTCATATACACCCCCGTTGATCCCTTGTTGGGATGCATGC
GTGGAAAAGGGGTCGCCGAGTAtcaaaaaggggaagaaatttAATATGCG
AAGAATGTTCAAGACAAGACAGGCATACGCTCGTTCACGAGGCTTTTGAA
TCCGTGTTCTTGAGATAGAAAGCACATTTGAATACATATCGTCACTTACA
ACATTTTTCATTATTACAGTTCAGCTCCTTCACAAACTGAAAGTGCGCTC
GGCTGACGGGAAGGCCACACTCCTCAAAGTCATAAAAAATCCTGTTACTC
GGTACTTGCCCGCGGGCTTCAAGTGCTACGGATTTTCAGTGCAGGGCACC
CTATACAACCCGAACGCTTTAGCCTGTACGTTACCTGACGACAAACCTGT
CGTCTTTGTGTTGGGCGCGATGGCTGCAGGACACATCACTGTGCAAGACC
ATCCCTATGTAAGtgcagcgagggaggccatgATGACTTTAAAGCTTGCA
ACAACGTGCGTGCCGGTGTCGGCTACTTTATCTGACTGAAAGGAGCGCCA
CGTATCAAGTATTGCATTTACACTGTGAATCGCGGACGCAGACGAGGCTT
GAGGACTTCGCAGGCCTGGATATCACGCTTGATTCCAGAGATGCAGTCTT
TCACTTGCTTCAGATAAGCAGTGTATGAACTTCACTCATGTCGACCATAC
TCTTACAATGTTCTAACTCGTTTTTGTACATGCAAATCACATGACCCGAC
CTGCGCACAGATTGAAGAGATGGTCTCCGTATCCGATTTCCCGGTAAGCC
TCAGATTCGTGAATGATATAGCGAACGCTCCGATGTGGTGAATTGCGACC
AGCCAAATGGTCCCGTGCCGTGTATTACACTCTCTTTCATTTAAAATACT
TTGCTTCTCTTACTATCCACGCCCGTATAACTGAACAGCTCAGTGGTGCC
ACGGCGATCAATCGCTTGCTAGGTGCAATAGAAAACTACTGGGGTATTGT
ATAGCTTCACACTAATAAAGCAAAActaaaagaagaaggaaaatatCAAA
ACTCTACTTTCA back to topCoding sequence (CDS) from alignment at CM002465.1:614448..616059+ >rna5283 ID=rna5283|Name=rna5283|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002465.1:614448..616059+ (Nannochloropsis gaditana)
ATGGCCGAACCCGAGAGCAGCCATGATGTCACAGAGTCTTTGCGGAACAA
AGAGGTTATCACGGTTGTACTTGACAAGGCGTCACTGGAAACAGTCAAGA
TGAAGAGCGGGCAGTATTGTCTTCTAAATTGTGACGATCATCAGGCAATG
ATGAAAAAAAGTGGGAAAAATCCAGCAGATTATAGACCAGATATCCTACA
TCAGGAGTTATTGGCTTTGTTGGACAGTCCTTTGAATAAAGTGGGAAAGC
TCAAGGTGTATATCCGCTCGTCCTCGAATGTCCTCATCGAGGTCAACGCA
AAATGCCGCATTCCAAGGACCTACAAGCGATTTGCCGGACTTATGGTTCA
GCTCCTTCACAAACTGAAAGTGCGCTCGGCTGACGGGAAGGCCACACTCC
TCAAAGTCATAAAAAATCCTGTTACTCGGTACTTGCCCGCGGGCTTCAAG
TGCTACGGATTTTCAGTGCAGGGCACCCTATACAACCCGAACGCTTTAGC
CTGTACGTTACCTGACGACAAACCTGTCGTCTTTGTGTTGGGCGCGATGG
CTGCAGGACACATCACTGTGCAAGACCATCCCTATGTAAGtgcagcgagg
gaggccatgATGACTTTAAAGCTTGCAACAACGTGCGTGCCGGTGTCGGC
TACTTTATCTGACTGAATGGCCGAACCCGAGAGCAGCCATGATGTCACAG
AGTCTTTGCGGAACAAAGAGGTTATCACGGTTGTACTTGACAAGGCGTCA
CTGGAAACAGTCAAGATGAAGAGCGGGCAGTATTGTCTTCTAAATTGTGA
CGATCATCAGGCAATGATGAAAAAAAGTGGGAAAAATCCAGCAGATTATA
GACCAGATATCCTACATCAGGAGTTATTGGCTTTGTTGGACAGTCCTTTG
AATAAAGTGGGAAAGCTCAAGGTGTATATCCGCTCGTCCTCGAATGTCCT
CATCGAGGTCAACGCAAAATGCCGCATTCCAAGGACCTACAAGCGATTTG
CCGGACTTATGGTTCAGCTCCTTCACAAACTGAAAGTGCGCTCGGCTGAC
GGGAAGGCCACACTCCTCAAAGTCATAAAAAATCCTGTTACTCGGTACTT
GCCCGCGGGCTTCAAGTGCTACGGATTTTCAGTGCAGGGCACCCTATACA
ACCCGAACGCTTTAGCCTGTACGTTACCTGACGACAAACCTGTCGTCTTT
GTGTTGGGCGCGATGGCTGCAGGACACATCACTGTGCAAGACCATCCCTA
TGTAAGtgcagcgagggaggccatgATGACTTTAAAGCTTGCAACAACGT
GCGTGCCGGTGTCGGCTACTTTATCTGACTGA back to top
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