EWM25399.1, cds5270 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|585107160|gb|EWM25399.1| (ribosomal rna small subunit methyltransferase nep1 [Nannochloropsis gaditana]) HSP 1 Score: 455.677 bits (1171), Expect = 2.990e-162 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query: 1 MAEPESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAAREAMMTLKLATTCVPVSATLSD 221
MAEPESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAAREAMMTLKLATTCVPVSATLSD
Sbjct: 1 MAEPESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAAREAMMTLKLATTCVPVSATLSD 221
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|298710592|emb|CBJ32022.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 251.906 bits (642), Expect = 1.817e-81 Identity = 117/179 (65.36%), Postives = 145/179 (81.01%), Query Frame = 0
Query: 20 ITVVLDKASLETVKMKSGQYCLLNCDDHQAMM-KKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVS 197
+ V+L +ASLETVK K G + LLNCDDH+ ++ KKSGK+P D RPDI+HQELLALLDSPLNK GKL+VYI ++ NVLIEVN + RIPRT+KRF+GLMVQLLHKLK+R+A LLKV+KNP TR+LP G K +G SV+GTLYNPN A TLPDD P+VF +GAMA+GH+T ++P +
Sbjct: 30 VIVILKRASLETVKTKKGDFQLLNCDDHRRLVTKKSGKDPKDLRPDIVHQELLALLDSPLNKAGKLQVYILTTLNVLIEVNPQIRIPRTFKRFSGLMVQLLHKLKIRAAGNSTMLLKVVKNPPTRHLPPGSKTFGLSVEGTLYNPNHFAATLPDDAPIVFYIGAMASGHLTKDENPEIE 208
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|676394237|ref|XP_009040396.1| (hypothetical protein AURANDRAFT_6205, partial [Aureococcus anophagefferens] >gi|676398797|ref|XP_009042676.1| hypothetical protein AURANDRAFT_7809, partial [Aureococcus anophagefferens] >gi|323446483|gb|EGB02628.1| hypothetical protein AURANDRAFT_7809, partial [Aureococcus anophagefferens] >gi|323448947|gb|EGB04839.1| hypothetical protein AURANDRAFT_6205, partial [Aureococcus anophagefferens]) HSP 1 Score: 236.884 bits (603), Expect = 4.926e-76 Identity = 114/174 (65.52%), Postives = 136/174 (78.16%), Query Frame = 0
Query: 20 ITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDH 193
+ V+LD A LE VK K G++ LLN DDH++++ K G++PA+ RPDI HQEL+AL DSPLNK +LKVY+R+ NVLIE + RIPRTYKRFAGLMVQLLHKLKVR+ADG+ TLLKVIKNP+ R+LP CYGFSVQG Y P A A TLP DKPV FV+GAMAAGH+ DH
Sbjct: 3 VIVLLDLACLEIVKTKRGEFQLLNGDDHRSVLGKHGRDPAECRPDIAHQELMALFDSPLNKAKQLKVYMRTRQNVLIEFHESVRIPRTYKRFAGLMVQLLHKLKVRAADGRETLLKVIKNPIQRHLPPDCVCYGFSVQGDRYTPGAFAATLP-DKPVCFVVGAMAAGHVNQDDH 175
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|953500905|emb|CEG37938.1| (ribosome biogenesis protein [Plasmopara halstedii]) HSP 1 Score: 230.72 bits (587), Expect = 2.031e-73 Identity = 110/185 (59.46%), Postives = 143/185 (77.30%), Query Frame = 0
Query: 12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
+ ++ ++VI V+L++A+LETVK G Y LLNCDDH+ + +K + ++ RPDILHQEL+ALLDSPLNK G LK+YIRS+ +LIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG TLL VIKNPVT+YLPA K Y S GTL NP TLP D+PVVF++GAMA GHI+ ++ Y+
Sbjct: 6 DDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHRKLEREASESRPDILHQELMALLDSPLNKTGYLKIYIRSTKGILIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLSVIKNPVTKYLPANSKKYALSRTGTLVNPWEWVETLPKDEPVVFIIGAMAHGHISKENTNYL 188
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|567954278|gb|ETK79916.1| (hypothetical protein L915_14285 [Phytophthora parasitica] >gi|567982900|gb|ETL33302.1| hypothetical protein L916_14190 [Phytophthora parasitica] >gi|570320531|gb|ETO68479.1| hypothetical protein F444_14670 [Phytophthora parasitica P1976] >gi|570944388|gb|ETP09645.1| hypothetical protein F441_14524 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 230.335 bits (586), Expect = 4.503e-73 Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 0
Query: 12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAA 199
E ++ ++VI V+L++A+LETVK G Y LLNCDDH+ + KK ++ + RPDILHQEL+ALLDSPLNK G LK+YI+S+ VLIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG TLL VIKNPVT+YLPA K Y S GTL NP +LP D+PVVF+ GAMA GHI+ ++ YV A+
Sbjct: 6 EDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHKKLNRDASQSRPDILHQELMALLDSPLNKAGYLKMYIKSTKGVLIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLNVIKNPVTKYLPANCKKYALSRTGTLVNPWEWVESLPKDEPVVFIFGAMAHGHISKENCNYVRAS 191
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|675202953|ref|XP_008910361.1| (hypothetical protein PPTG_15098 [Phytophthora parasitica INRA-310] >gi|568012409|gb|ETL86587.1| hypothetical protein L917_13983 [Phytophthora parasitica] >gi|568089592|gb|ETN04434.1| hypothetical protein PPTG_15098 [Phytophthora parasitica INRA-310] >gi|570975779|gb|ETP37712.1| hypothetical protein F442_14484 [Phytophthora parasitica P10297]) HSP 1 Score: 229.95 bits (585), Expect = 5.852e-73 Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 0
Query: 12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAA 199
E ++ ++VI V+L++A+LETVK G Y LLNCDDH+ + KK ++ + RPDILHQEL+ALLDSPLNK G LK+YI+S+ VLIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG TLL VIKNPVT+YLPA K Y S GTL NP +LP D+PVVF+ GAMA GHI+ ++ YV A+
Sbjct: 6 EDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHKKLNRDASQSRPDILHQELMALLDSPLNKAGYLKMYIKSTKGVLIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLNVIKNPVTKYLPANCKKYALSRTGTLVNPWEWVESLPKDEPVVFIFGAMAHGHISKENCNYVRAS 191
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|566016827|gb|ETI39738.1| (hypothetical protein F443_14664 [Phytophthora parasitica P1569] >gi|568042422|gb|ETM39751.1| hypothetical protein L914_14108 [Phytophthora parasitica]) HSP 1 Score: 229.565 bits (584), Expect = 7.122e-73 Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 0
Query: 12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAA 199
E ++ ++VI V+L++A+LETVK G Y LLNCDDH+ + KK ++ + RPDILHQEL+ALLDSPLNK G LK+YI+S+ VLIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG TLL VIKNPVT+YLPA K Y S GTL NP +LP D+PVVF+ GAMA GHI+ ++ YV A+
Sbjct: 6 EDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHKKLNRDASQSRPDILHQELMALLDSPLNKAGYLKMYIKSTKGVLIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLNVIKNPVTKYLPANCKKYALSRTGTLVNPWEWVESLPKDEPVVFIFGAMAHGHISKENCNYVRAS 191
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|669166810|ref|XP_008618967.1| (hypothetical protein SDRG_14604 [Saprolegnia diclina VS20] >gi|530729305|gb|EQC27547.1| hypothetical protein SDRG_14604 [Saprolegnia diclina VS20]) HSP 1 Score: 227.639 bits (579), Expect = 3.832e-72 Identity = 115/187 (61.50%), Postives = 141/187 (75.40%), Query Frame = 0
Query: 10 VTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
+++ L K + V+L+ A+LETVK G + LLNCDDH+ + KK K+P+ RPDILHQEL+ALLDSPLNK G LKVYIRS+ NVLIEV+++ RIPRTYKRFAGLMVQLLH LK+RS+DGK TLLKVIKNP+ +LPA K YG S G L +P LP + PVVFVLGAMA GH++ + PYV
Sbjct: 1 MSKKLETKPQVIVILENAALETVKTAKG-HQLLNCDDHKGIHKKHNKDPSASRPDILHQELMALLDSPLNKAGYLKVYIRSAKNVLIEVSSQMRIPRTYKRFAGLMVQLLHTLKIRSSDGKTTLLKVIKNPIDAHLPANIKKYGCSCTGNLVDPWEFVSELPRE-PVVFVLGAMAHGHVSKEMCPYV 185
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|675202955|ref|XP_008910362.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566016828|gb|ETI39739.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567954279|gb|ETK79917.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567982901|gb|ETL33303.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568012410|gb|ETL86588.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568042423|gb|ETM39752.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568089593|gb|ETN04435.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570320532|gb|ETO68480.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570944389|gb|ETP09646.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570975780|gb|ETP37713.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970658702|gb|KUF96438.1| hypothetical protein AM588_10007076 [Phytophthora nicotianae]) HSP 1 Score: 226.868 bits (577), Expect = 7.871e-72 Identity = 111/185 (60.00%), Postives = 142/185 (76.76%), Query Frame = 0
Query: 12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
E ++ ++VI V+L++A+LETVK G Y LLNCDDH+ + KK ++ + RPDILHQEL+ALLDSPLNK G LK+YI+S+ VLIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG TLL VIKNPVT+YLPA K Y S GTL NP +LP D+PVVF+ GAMA GHI+ ++ Y+
Sbjct: 6 EDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHKKLNRDASQSRPDILHQELMALLDSPLNKAGYLKMYIKSTKGVLIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLNVIKNPVTKYLPANCKKYALSRTGTLVNPWEWVESLPKDEPVVFIFGAMAHGHISKENCNYL 188
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|698807926|ref|XP_009836992.1| (hypothetical protein H257_11691 [Aphanomyces astaci] >gi|574108057|gb|ETV73566.1| hypothetical protein H257_11691 [Aphanomyces astaci]) HSP 1 Score: 225.328 bits (573), Expect = 2.701e-71 Identity = 116/183 (63.39%), Postives = 137/183 (74.86%), Query Frame = 0
Query: 14 LRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
L K + VVL+ A+LETVK G Y LLNCDDH+ + KK K+P RPDILHQEL+ALLDSPLNK G LKV+IRSS VLI+V+++ RIPRTYKRFAGLMVQLLH LK+RS+DGK TLLKVI+NPV + P K YG SV G L +P A LP + PVVFVLGAMA GHIT++ PY+
Sbjct: 9 LDTKPQVIVVLENAALETVKTTRG-YQLLNCDDHKGIHKKHNKDPTASRPDILHQELMALLDSPLNKAGHLKVFIRSSKGVLIQVSSQMRIPRTYKRFAGLMVQLLHALKIRSSDGKTTLLKVIQNPVDAHFPPNCKKYGCSVTGDLVDPWEFATELPKE-PVVFVLGAMAHGHITMEMCPYI 189 The following BLAST results are available for this feature:
BLAST of EWM25399.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|