EWM25399.1, cds5270 (CDS) Nannochloropsis gaditana

Overview
NameEWM25399.1
Unique Namecds5270
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:614654..614999 +
Alignment locationCM002465.1:615217..615536 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25399.1
Productribosomal rna small subunit methyltransferase nep1
Orig transcript idgnl|cribi|Naga_100005g75.6693.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:614654..614999 +
CM002465.1supercontigCM002465.1:615217..615536 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR005304Rbsml_bgen_MeTrfase_EMG1/NEP1
Homology
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|585107160|gb|EWM25399.1| (ribosomal rna small subunit methyltransferase nep1 [Nannochloropsis gaditana])

HSP 1 Score: 455.677 bits (1171), Expect = 2.990e-162
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MAEPESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAAREAMMTLKLATTCVPVSATLSD 221
            MAEPESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAAREAMMTLKLATTCVPVSATLSD
Sbjct:    1 MAEPESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAAREAMMTLKLATTCVPVSATLSD 221          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|298710592|emb|CBJ32022.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 251.906 bits (642), Expect = 1.817e-81
Identity = 117/179 (65.36%), Postives = 145/179 (81.01%), Query Frame = 0
Query:   20 ITVVLDKASLETVKMKSGQYCLLNCDDHQAMM-KKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVS 197
            + V+L +ASLETVK K G + LLNCDDH+ ++ KKSGK+P D RPDI+HQELLALLDSPLNK GKL+VYI ++ NVLIEVN + RIPRT+KRF+GLMVQLLHKLK+R+A     LLKV+KNP TR+LP G K +G SV+GTLYNPN  A TLPDD P+VF +GAMA+GH+T  ++P + 
Sbjct:   30 VIVILKRASLETVKTKKGDFQLLNCDDHRRLVTKKSGKDPKDLRPDIVHQELLALLDSPLNKAGKLQVYILTTLNVLIEVNPQIRIPRTFKRFSGLMVQLLHKLKIRAAGNSTMLLKVVKNPPTRHLPPGSKTFGLSVEGTLYNPNHFAATLPDDAPIVFYIGAMASGHLTKDENPEIE 208          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|676394237|ref|XP_009040396.1| (hypothetical protein AURANDRAFT_6205, partial [Aureococcus anophagefferens] >gi|676398797|ref|XP_009042676.1| hypothetical protein AURANDRAFT_7809, partial [Aureococcus anophagefferens] >gi|323446483|gb|EGB02628.1| hypothetical protein AURANDRAFT_7809, partial [Aureococcus anophagefferens] >gi|323448947|gb|EGB04839.1| hypothetical protein AURANDRAFT_6205, partial [Aureococcus anophagefferens])

HSP 1 Score: 236.884 bits (603), Expect = 4.926e-76
Identity = 114/174 (65.52%), Postives = 136/174 (78.16%), Query Frame = 0
Query:   20 ITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDH 193
            + V+LD A LE VK K G++ LLN DDH++++ K G++PA+ RPDI HQEL+AL DSPLNK  +LKVY+R+  NVLIE +   RIPRTYKRFAGLMVQLLHKLKVR+ADG+ TLLKVIKNP+ R+LP    CYGFSVQG  Y P A A TLP DKPV FV+GAMAAGH+   DH
Sbjct:    3 VIVLLDLACLEIVKTKRGEFQLLNGDDHRSVLGKHGRDPAECRPDIAHQELMALFDSPLNKAKQLKVYMRTRQNVLIEFHESVRIPRTYKRFAGLMVQLLHKLKVRAADGRETLLKVIKNPIQRHLPPDCVCYGFSVQGDRYTPGAFAATLP-DKPVCFVVGAMAAGHVNQDDH 175          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|953500905|emb|CEG37938.1| (ribosome biogenesis protein [Plasmopara halstedii])

HSP 1 Score: 230.72 bits (587), Expect = 2.031e-73
Identity = 110/185 (59.46%), Postives = 143/185 (77.30%), Query Frame = 0
Query:   12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
            + ++ ++VI V+L++A+LETVK   G Y LLNCDDH+ + +K  +  ++ RPDILHQEL+ALLDSPLNK G LK+YIRS+  +LIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG  TLL VIKNPVT+YLPA  K Y  S  GTL NP     TLP D+PVVF++GAMA GHI+ ++  Y+
Sbjct:    6 DDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHRKLEREASESRPDILHQELMALLDSPLNKTGYLKIYIRSTKGILIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLSVIKNPVTKYLPANSKKYALSRTGTLVNPWEWVETLPKDEPVVFIIGAMAHGHISKENTNYL 188          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|567954278|gb|ETK79916.1| (hypothetical protein L915_14285 [Phytophthora parasitica] >gi|567982900|gb|ETL33302.1| hypothetical protein L916_14190 [Phytophthora parasitica] >gi|570320531|gb|ETO68479.1| hypothetical protein F444_14670 [Phytophthora parasitica P1976] >gi|570944388|gb|ETP09645.1| hypothetical protein F441_14524 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 230.335 bits (586), Expect = 4.503e-73
Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 0
Query:   12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAA 199
            E ++ ++VI V+L++A+LETVK   G Y LLNCDDH+ + KK  ++ +  RPDILHQEL+ALLDSPLNK G LK+YI+S+  VLIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG  TLL VIKNPVT+YLPA  K Y  S  GTL NP     +LP D+PVVF+ GAMA GHI+ ++  YV A+
Sbjct:    6 EDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHKKLNRDASQSRPDILHQELMALLDSPLNKAGYLKMYIKSTKGVLIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLNVIKNPVTKYLPANCKKYALSRTGTLVNPWEWVESLPKDEPVVFIFGAMAHGHISKENCNYVRAS 191          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|675202953|ref|XP_008910361.1| (hypothetical protein PPTG_15098 [Phytophthora parasitica INRA-310] >gi|568012409|gb|ETL86587.1| hypothetical protein L917_13983 [Phytophthora parasitica] >gi|568089592|gb|ETN04434.1| hypothetical protein PPTG_15098 [Phytophthora parasitica INRA-310] >gi|570975779|gb|ETP37712.1| hypothetical protein F442_14484 [Phytophthora parasitica P10297])

HSP 1 Score: 229.95 bits (585), Expect = 5.852e-73
Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 0
Query:   12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAA 199
            E ++ ++VI V+L++A+LETVK   G Y LLNCDDH+ + KK  ++ +  RPDILHQEL+ALLDSPLNK G LK+YI+S+  VLIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG  TLL VIKNPVT+YLPA  K Y  S  GTL NP     +LP D+PVVF+ GAMA GHI+ ++  YV A+
Sbjct:    6 EDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHKKLNRDASQSRPDILHQELMALLDSPLNKAGYLKMYIKSTKGVLIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLNVIKNPVTKYLPANCKKYALSRTGTLVNPWEWVESLPKDEPVVFIFGAMAHGHISKENCNYVRAS 191          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|566016827|gb|ETI39738.1| (hypothetical protein F443_14664 [Phytophthora parasitica P1569] >gi|568042422|gb|ETM39751.1| hypothetical protein L914_14108 [Phytophthora parasitica])

HSP 1 Score: 229.565 bits (584), Expect = 7.122e-73
Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 0
Query:   12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYVSAA 199
            E ++ ++VI V+L++A+LETVK   G Y LLNCDDH+ + KK  ++ +  RPDILHQEL+ALLDSPLNK G LK+YI+S+  VLIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG  TLL VIKNPVT+YLPA  K Y  S  GTL NP     +LP D+PVVF+ GAMA GHI+ ++  YV A+
Sbjct:    6 EDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHKKLNRDASQSRPDILHQELMALLDSPLNKAGYLKMYIKSTKGVLIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLNVIKNPVTKYLPANCKKYALSRTGTLVNPWEWVESLPKDEPVVFIFGAMAHGHISKENCNYVRAS 191          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|669166810|ref|XP_008618967.1| (hypothetical protein SDRG_14604 [Saprolegnia diclina VS20] >gi|530729305|gb|EQC27547.1| hypothetical protein SDRG_14604 [Saprolegnia diclina VS20])

HSP 1 Score: 227.639 bits (579), Expect = 3.832e-72
Identity = 115/187 (61.50%), Postives = 141/187 (75.40%), Query Frame = 0
Query:   10 VTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
            +++ L  K  + V+L+ A+LETVK   G + LLNCDDH+ + KK  K+P+  RPDILHQEL+ALLDSPLNK G LKVYIRS+ NVLIEV+++ RIPRTYKRFAGLMVQLLH LK+RS+DGK TLLKVIKNP+  +LPA  K YG S  G L +P      LP + PVVFVLGAMA GH++ +  PYV
Sbjct:    1 MSKKLETKPQVIVILENAALETVKTAKG-HQLLNCDDHKGIHKKHNKDPSASRPDILHQELMALLDSPLNKAGYLKVYIRSAKNVLIEVSSQMRIPRTYKRFAGLMVQLLHTLKIRSSDGKTTLLKVIKNPIDAHLPANIKKYGCSCTGNLVDPWEFVSELPRE-PVVFVLGAMAHGHVSKEMCPYV 185          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|675202955|ref|XP_008910362.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566016828|gb|ETI39739.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567954279|gb|ETK79917.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567982901|gb|ETL33303.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568012410|gb|ETL86588.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568042423|gb|ETM39752.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568089593|gb|ETN04435.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570320532|gb|ETO68480.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570944389|gb|ETP09646.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570975780|gb|ETP37713.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970658702|gb|KUF96438.1| hypothetical protein AM588_10007076 [Phytophthora nicotianae])

HSP 1 Score: 226.868 bits (577), Expect = 7.871e-72
Identity = 111/185 (60.00%), Postives = 142/185 (76.76%), Query Frame = 0
Query:   12 ESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
            E ++ ++VI V+L++A+LETVK   G Y LLNCDDH+ + KK  ++ +  RPDILHQEL+ALLDSPLNK G LK+YI+S+  VLIEV+++ R+PRTYKRFAGLMVQLLH LK+RS+DG  TLL VIKNPVT+YLPA  K Y  S  GTL NP     +LP D+PVVF+ GAMA GHI+ ++  Y+
Sbjct:    6 EDVKRRQVI-VILEQAALETVKTSKG-YQLLNCDDHKGIHKKLNRDASQSRPDILHQELMALLDSPLNKAGYLKMYIKSTKGVLIEVSSQMRVPRTYKRFAGLMVQLLHTLKIRSSDGNHTLLNVIKNPVTKYLPANCKKYALSRTGTLVNPWEWVESLPKDEPVVFIFGAMAHGHISKENCNYL 188          
BLAST of EWM25399.1 vs. NCBI_GenBank
Match: gi|698807926|ref|XP_009836992.1| (hypothetical protein H257_11691 [Aphanomyces astaci] >gi|574108057|gb|ETV73566.1| hypothetical protein H257_11691 [Aphanomyces astaci])

HSP 1 Score: 225.328 bits (573), Expect = 2.701e-71
Identity = 116/183 (63.39%), Postives = 137/183 (74.86%), Query Frame = 0
Query:   14 LRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
            L  K  + VVL+ A+LETVK   G Y LLNCDDH+ + KK  K+P   RPDILHQEL+ALLDSPLNK G LKV+IRSS  VLI+V+++ RIPRTYKRFAGLMVQLLH LK+RS+DGK TLLKVI+NPV  + P   K YG SV G L +P   A  LP + PVVFVLGAMA GHIT++  PY+
Sbjct:    9 LDTKPQVIVVLENAALETVKTTRG-YQLLNCDDHKGIHKKHNKDPTASRPDILHQELMALLDSPLNKAGHLKVFIRSSKGVLIQVSSQMRIPRTYKRFAGLMVQLLHALKIRSSDGKTTLLKVIQNPVDAHFPPNCKKYGCSVTGDLVDPWEFATELPKE-PVVFVLGAMAHGHITMEMCPYI 189          
The following BLAST results are available for this feature:
BLAST of EWM25399.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107160|gb|EWM25399.1|2.990e-162100.00ribosomal rna small subunit methyltransferase nep1... [more]
gi|298710592|emb|CBJ32022.1|1.817e-8165.36conserved unknown protein [Ectocarpus siliculosus][more]
gi|676394237|ref|XP_009040396.1|4.926e-7665.52hypothetical protein AURANDRAFT_6205, partial [Aur... [more]
gi|953500905|emb|CEG37938.1|2.031e-7359.46ribosome biogenesis protein [Plasmopara halstedii][more]
gi|567954278|gb|ETK79916.1|4.503e-7360.11hypothetical protein L915_14285 [Phytophthora para... [more]
gi|675202953|ref|XP_008910361.1|5.852e-7360.11hypothetical protein PPTG_15098 [Phytophthora para... [more]
gi|566016827|gb|ETI39738.1|7.122e-7360.11hypothetical protein F443_14664 [Phytophthora para... [more]
gi|669166810|ref|XP_008618967.1|3.832e-7261.50hypothetical protein SDRG_14604 [Saprolegnia dicli... [more]
gi|675202955|ref|XP_008910362.1|7.871e-7260.00hypothetical protein, variant [Phytophthora parasi... [more]
gi|698807926|ref|XP_009836992.1|2.701e-7163.39hypothetical protein H257_11691 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5283rna5283Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications