rna5280, rna5280 (mRNA) Nannochloropsis gaditana

Overview
Namerna5280
Unique Namerna5280
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length387
Alignment locationCM002465.1:605986..608070 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF2993
Orig transcript idgnl|cribi|Naga_100005g72.6690.mrna
Orig protein idgnl|cribi|Naga_100005g72.6690
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:605986..608070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g72gene5100Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5280rna5280-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25396.1cds5267Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5280 ID=rna5280|Name=rna5280|organism=Nannochloropsis gaditana|type=mRNA|length=387bp
ATGCTCATCGCGCTTTCTTTTTCTGCTTCATCCCGCGGTGACATGTCTGC
GACCCCATCACGTCAGCACGTCTTGGGGTTATTTCGCTCTTTGCTTCGAC
AGGCGGGGCGCTTAGAAGATTACAATTTCCGTTCCTACGCAAAGCGTCGA
GTCGCGTTAGGTTTTCAGGAGGGTCGATCTTCGAGTGGAGAAGAAGCAGC
GCGGGAGTACAGGGACGGAGTCAAGAATTTGGAAATGCTCAAGCGACAGG
CCTTGATAAGCCACCTCTACCCGTCGAAACGTTCTTACGGAGGGCGCAGG
GCCGTGCAAGAAAATCATAATCGAGGAACAGAAAGGCCAGATGTTGTGCA
GATTTACGGGCCAACTAATAACCAGATAGGCTGGTGA
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protein sequence of rna5280

>rna5280-protein ID=rna5280-protein|Name=rna5280|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MRGLPSMVLCLLLQPALVEAFTSRLSPLTIPDTVIMTSRQKPPPIMTPTK
QISQHTRIRPLLSSTLPQDRPERQGRRWRRSQIPGEAIEYSMSERKPILS
TVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVL
ENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVS
ASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTA
NVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSI
RAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFL
YDMGAFFSSFFGFTHFSDLNLDG
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mRNA from alignment at CM002465.1:605986..608070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5280 ID=rna5280|Name=rna5280|organism=Nannochloropsis gaditana|type=mRNA|length=2085bp|location=Sequence derived from alignment at CM002465.1:605986..608070- (Nannochloropsis gaditana)
CGCCTGCTGGAACAACTTTCGGGGGCTTGTAATCCCCACTCATGTCATCC
GCTGCTATTGTTCCTCTTCTTACTTACCTTTGCCATTTTTTTTCAAATTT
GGTCACAGGGATATCAACGAAACCATTGGGAGGTTGAAGTGGTGTATAAT
TCAGCATTTTTTTGGCTTGCCTCCCGTCCACGCCTCGTCCCTGTTGCCAC
GTCTCACCCTTGCCACACAAGTATTTTTTTGCAACGCAGTCTTTTCTCGC
GGTAACTCCGAAGCGCAAGGACAAAACAACAAGTAATATCAAAAAACATG
AGAGGCCTGCCGTCTATGGTGCTATGCCTGCTTTTGCAACCCGCGCTCGT
TGAGGCTTTCACGTCCCGTCTGTCGCCTTTGACGATCCCCGACACAGTGA
TAATGACATCGAGACAGAAACCGCCACCAATAATGACTCCAACCAAGCAG
ATTTCTCAGCACACTAGAATAAGACCATTGTTATCTAGCACATTGCCGCA
AGACAGGCCTGAGCGGCAAGGGAGGCGGTGGAGAAGAAGTCAAATACCCG
GCGAGGCGATTGAATACAGTATGAGTGAACGGAAACCGATTTTGTCCACC
GTCGTGGAGGTTCTTGCATCAAAACTAGTCCGCAAAACAGCAAGACGCGT
GACAGGCTTGGACGTTGATGTGGGGGCACGCTCTAATTCGGATGTTCTTG
CTGGGAACTTGCCGTTAGTGAAGGTGCGTGAGGCTGCAGTTTGAAGGAAT
TCGTTTGTAGGACCGCCGACGTTTCAGAGTAGTAGAAGAGTTGTGGCCCT
ATACCTTTTATGTCGAATGGCTCCCACAATAGTCCCTGCTTCTTACAATT
TGGTGCCATGCATCACAGGCGAAGTTCAGCCGCATTGTCCTTGAAAACCT
GCAAATCAGCGGGGGAGGGCGCATGGAGATCACCGGGCTGAACATCAGGC
TGTTGGCCCTACTTCTAGCTCGCCGACTGTCTCTCATTCGAAAACCTTTC
GAGGTATGCGGAGAATACGTGCTTACCCAGCAAGACGTGTCCGCCTCCAA
GCTCATCCGCGACATGGTTCAGCTCCTCGTCAACAACGTCCTCCGCACCC
TCTTCCCCTCCCTGCACTTGACCTTCTTCGACGTTTCCATCGACTCCGTC
CGCATCTCCCCCCGGAGAAAGCTAGCAGTGCACGGAACGGCCAACGTGGC
GGAGTCAGCCTCGGGGATGCCCTTCACGCTCCTGACGGGGGTGGGCCTGG
CGGGGGACGGGCACATCGTGTACCTGGACGACCCGGAGCTAGTGCTCAAC
CCCGAGGCGCCCCTGCCAGTGAAGGTGCCCTTGGGCTCCATTCGGGCGTT
TGACGTGGACATCGGAGACAACGCGCGCATCGAGCGACTGGAGATAGATG
AGGCAAGGGGTGTGACGGTGACGGCCCGCACCCTTATCACACCGGCACCG
CCATTTCAGGTCACGGATGTGGGGAAGCGGGCGGCCTTTTTGTATGACAT
GGGGGCGTTCTTCAGCAGTTTTTTCGGGTTCACCCATTTTTCTGATCTGA
ACCTGGATGGCTAATGCCGAGTGACGGAACGGCGGTCAGGGAGGGGGACG
GAGGGTGAGGAAGCGAGCTAGAACAGACATAGGGGCGTATGGGGAGTACC
ACAGGAACTAGAAGCCATAAAATTGTGGACGTCAGAGGCGAAAGAGGCGC
TTGGATGGCAGACGCAGCCGATGACTGGGTGGATGCCGAGGCCGGCCATG
AAAGGATGCCGAGGCCGGCCATGAGGAGCGTGGCGGAGGGCGAATGCTTC
GAAAGGGAGTTCCAGTGAGTGCATGTGCAGGGAATAGACAGGTAATTTAA
GAAAGTGTGACAACTGAGCGCTAGAGAACGGCTGCATACATTGCTGGTCA
GTTTGAATGTAGCGCAAACCGCTTGTACAGATAGACATAGAGAATGCAAC
ACAGACGCGAATGCTTGTATATAACTGCTTAGAATTGATTTTTGTCATAG
AGTACAATTGAGGCATTAAGTAAGGTTCAAAGGAAGTGATTGACGAAGTT
GTCACAAATATTTCAAGTTCACCAGCCTATCTGGT
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Coding sequence (CDS) from alignment at CM002465.1:605986..608070-

>rna5280 ID=rna5280|Name=rna5280|organism=Nannochloropsis gaditana|type=CDS|length=2244bp|location=Sequence derived from alignment at CM002465.1:605986..608070- (Nannochloropsis gaditana)
GCGAAGTTCAGCCGCATTGTCCTTGAAAACCTGCAAATCAGCGGGGGAGG
GCGCATGGAGATCACCGGGCTGAACATCAGGCTGTTGGCCCTACTTCTAG
CTCGCCGACTGTCTCTCATTCGAAAACCTTTCGAGGTATGCGGAGAATAC
GTGCTTACCCAGCAAGACGTGTCCGCCTCCAAGCTCATCCGCGACATGGT
TCAGCTCCTCGTCAACAACGTCCTCCGCACCCTCTTCCCCTCCCTGCACT
TGACCTTCTTCGACGTTTCCATCGACTCCGTCCGCATCTCCCCCCGGAGA
AAGCTAGCAGTGCACGGAACGGCCAACGTGGCGGAGTCAGCCTCGGGGAT
GCCCTTCACGCTCCTGACGGGGGTGGGCCTGGCGGGGGACGGGCACATCG
TGTACCTGGACGACCCGGAGCTAGTGCTCAACCCCGAGGCGCCCCTGCCA
GTGAAGGTGCCCTTGGGCTCCATTCGGGCGTTTGACGTGGACATCGGAGA
CAACGCGCGCATCGAGCGACTGGAGATAGATGAGGCAAGGGGTGTGACGG
TGACGGCCCGCACCCTTATCACACCGGCACCGCCATTTCAGGTCACGGAT
GTGGGGAAGCGGGCGGCCTTTTTGTATGACATGGGGGCGTTCTTCAGCAG
TTTTTTCGGGTTCACCCATTTTTCTGATCTGAACCTGGATGGCTAAATGA
GAGGCCTGCCGTCTATGGTGCTATGCCTGCTTTTGCAACCCGCGCTCGTT
GAGGCTTTCACGTCCCGTCTGTCGCCTTTGACGATCCCCGACACAGTGAT
AATGACATCGAGACAGAAACCGCCACCAATAATGACTCCAACCAAGCAGA
TTTCTCAGCACACTAGAATAAGACCATTGTTATCTAGCACATTGCCGCAA
GACAGGCCTGAGCGGCAAGGGAGGCGGTGGAGAAGAAGTCAAATACCCGG
CGAGGCGATTGAATACAGTATGAGTGAACGGAAACCGATTTTGTCCACCG
TCGTGGAGGTTCTTGCATCAAAACTAGTCCGCAAAACAGCAAGACGCGTG
ACAGGCTTGGACGTTGATGTGGGGGCACGCTCTAATTCGGATGTTCTTGC
TGGGAACTTGCCGTTAGTGAAGGCGAAGTTCAGCCGCATTGTCCTTGAAA
ACCTGCAAATCAGCGGGGGAGGGCGCATGGAGATCACCGGGCTGAACATC
AGGCTGTTGGCCCTACTTCTAGCTCGCCGACTGTCTCTCATTCGAAAACC
TTTCGAGGTATGCGGAGAATACGTGCTTACCCAGCAAGACGTGTCCGCCT
CCAAGCTCATCCGCGACATGGTTCAGCTCCTCGTCAACAACGTCCTCCGC
ACCCTCTTCCCCTCCCTGCACTTGACCTTCTTCGACGTTTCCATCGACTC
CGTCCGCATCTCCCCCCGGAGAAAGCTAGCAGTGCACGGAACGGCCAACG
TGGCGGAGTCAGCCTCGGGGATGCCCTTCACGCTCCTGACGGGGGTGGGC
CTGGCGGGGGACGGGCACATCGTGTACCTGGACGACCCGGAGCTAGTGCT
CAACCCCGAGGCGCCCCTGCCAGTGAAGGTGCCCTTGGGCTCCATTCGGG
CGTTTGACGTGGACATCGGAGACAACGCGCGCATCGAGCGACTGGAGATA
GATGAGGCAAGGGGTGTGACGGTGACGGCCCGCACCCTTATCACACCGGC
ACCGCCATTTCAGGTCACGGATGTGGGGAAGCGGGCGGCCTTTTTGTATG
ACATGGGGGCGTTCTTCAGCAGTTTTTTCGGGTTCACCCATTTTTCTGAT
CTGAACCTGGATGGCTAAATGAGAGGCCTGCCGTCTATGGTGCTATGCCT
GCTTTTGCAACCCGCGCTCGTTGAGGCTTTCACGTCCCGTCTGTCGCCTT
TGACGATCCCCGACACAGTGATAATGACATCGAGACAGAAACCGCCACCA
ATAATGACTCCAACCAAGCAGATTTCTCAGCACACTAGAATAAGACCATT
GTTATCTAGCACATTGCCGCAAGACAGGCCTGAGCGGCAAGGGAGGCGGT
GGAGAAGAAGTCAAATACCCGGCGAGGCGATTGAATACAGTATGAGTGAA
CGGAAACCGATTTTGTCCACCGTCGTGGAGGTTCTTGCATCAAAACTAGT
CCGCAAAACAGCAAGACGCGTGACAGGCTTGGACGTTGATGTGGGGGCAC
GCTCTAATTCGGATGTTCTTGCTGGGAACTTGCCGTTAGTGAAG
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Synonyms
Publications