EWM25396.1, cds5267 (CDS) Nannochloropsis gaditana

Overview
NameEWM25396.1
Unique Namecds5267
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:607348..607773 -
Alignment locationCM002465.1:606507..607202 -

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Properties
Property NameValue
Protein idEWM25396.1
ProductProtein of unknown function DUF2993
Orig transcript idgnl|cribi|Naga_100005g72.6690.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:607348..607773 -
CM002465.1supercontigCM002465.1:606507..607202 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR021373DUF2993
Homology
BLAST of EWM25396.1 vs. NCBI_GenBank
Match: gi|585107157|gb|EWM25396.1| (Protein of unknown function DUF2993 [Nannochloropsis gaditana])

HSP 1 Score: 747.273 bits (1928), Expect = 0.000e+0
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0
Query:    1 MRGLPSMVLCLLLQPALVEAFTSRLSPLTIPDTVIMTSRQKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRRWRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG 373
            MRGLPSMVLCLLLQPALVEAFTSRLSPLTIPDTVIMTSRQKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRRWRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG
Sbjct:    1 MRGLPSMVLCLLLQPALVEAFTSRLSPLTIPDTVIMTSRQKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRRWRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG 373          
BLAST of EWM25396.1 vs. NCBI_GenBank
Match: gi|298715384|emb|CBJ27995.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 135.961 bits (341), Expect = 5.500e-32
Identity = 82/217 (37.79%), Postives = 129/217 (59.45%), Query Frame = 0
Query:  148 IVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTL--FPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFG 362
            +++E L+ISGG RM IT L+++++ LL  +R    +KPFE+ G YVLT +D+S S ++R +V  ++N+ LR L    +  L    ++I  V ++ R +L + G   +A  ++ +PFT  T +G+ G GH+VYL D E V        + +PL  +  FDVD+G+ ARIE + I   + V + AR +I+P PP  V  + KRAAF +D+    S  FG
Sbjct:  288 MLVEGLEISGGARMNITNLDLKVMTLLW-KRFGSFKKPFEIEGSYVLTSEDLSTSSMVRRLVTNMMNSTLRKLETLATEPLRKSSITITQV-LAKRSRLVIEG--EMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAE-VFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQ-VALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFG 498          
BLAST of EWM25396.1 vs. NCBI_GenBank
Match: gi|873239205|emb|CEL94518.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 126.716 bits (317), Expect = 1.242e-28
Identity = 88/272 (32.35%), Postives = 142/272 (52.21%), Query Frame = 0
Query:  100 STVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTL--------FPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVT--DVGKRAAFLYDMGAFFSSFF 361
            S +V+ +A  ++++  R   GL + +      ++L G  PLV+ +F ++  + L ISGG  +EI  L IR  +LLL RR + +R PFE  G Y LT +D+  S  I  +++ L N +L  +         P L L    V+I+ V +   R L + G A+   + +  PF + TGVG+  +GH+VYL D  + L    P  V V +  + ++ +D+GDN  I+ L + + + +T+ AR  ++   PFQV       RAAF  D+    S FF
Sbjct:  250 SRLVQWIAVNIMQRCCRSAKGLTIQIDLLRRRNLLRGIFPLVRIRFRKLAFQALSISGGAEVEIRELAIRWGSLLL-RRQTFLRGPFETFGTYTLTSEDLEDSPFINRLLRQLANKLLSKMEGTWDGRNIPKLML----VTIEHVTVKDGR-LCITGIAHTVLN-TMTPFRIRTGVGVTSNGHVVYLRDTVVTLGVGTPWEVAVNV-RLESWTLDMGDNVEIDTLVLAKNK-ITLVARCQLSSVEPFQVVPPQSSDRAAFSIDLARLLSKFF 512          
BLAST of EWM25396.1 vs. NCBI_GenBank
Match: gi|299469746|emb|CBN76600.1| (hypothetical protein Esi_0000_0316 [Ectocarpus siliculosus])

HSP 1 Score: 64.6994 bits (156), Expect = 5.288e-8
Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 0
Query:   91 SMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLA--RRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLR 218
            S   R+P  S        + +  TA+    L+V+V AR+N D + G    +   F++ + E++Q+SGG   E+ G+++  L LL    RRL  +R+P E  G    T  DV+ S  IR + Q +VN+ LR
Sbjct:   13 SFGGRRPFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALR 141          
The following BLAST results are available for this feature:
BLAST of EWM25396.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107157|gb|EWM25396.1|0.000e+0100.00Protein of unknown function DUF2993 [Nannochlorops... [more]
gi|298715384|emb|CBJ27995.1|5.500e-3237.79expressed unknown protein [Ectocarpus siliculosus][more]
gi|873239205|emb|CEL94518.1|1.242e-2832.35unnamed protein product [Vitrella brassicaformis C... [more]
gi|299469746|emb|CBN76600.1|5.288e-833.08hypothetical protein Esi_0000_0316 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5280rna5280Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications