EWM25396.1, cds5267 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25396.1 vs. NCBI_GenBank
Match: gi|585107157|gb|EWM25396.1| (Protein of unknown function DUF2993 [Nannochloropsis gaditana]) HSP 1 Score: 747.273 bits (1928), Expect = 0.000e+0 Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0 Query: 1 MRGLPSMVLCLLLQPALVEAFTSRLSPLTIPDTVIMTSRQKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRRWRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG 373 MRGLPSMVLCLLLQPALVEAFTSRLSPLTIPDTVIMTSRQKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRRWRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG Sbjct: 1 MRGLPSMVLCLLLQPALVEAFTSRLSPLTIPDTVIMTSRQKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRRWRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG 373
BLAST of EWM25396.1 vs. NCBI_GenBank
Match: gi|298715384|emb|CBJ27995.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 135.961 bits (341), Expect = 5.500e-32 Identity = 82/217 (37.79%), Postives = 129/217 (59.45%), Query Frame = 0 Query: 148 IVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTL--FPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFG 362 +++E L+ISGG RM IT L+++++ LL +R +KPFE+ G YVLT +D+S S ++R +V ++N+ LR L + L ++I V ++ R +L + G +A ++ +PFT T +G+ G GH+VYL D E V + +PL + FDVD+G+ ARIE + I + V + AR +I+P PP V + KRAAF +D+ S FG Sbjct: 288 MLVEGLEISGGARMNITNLDLKVMTLLW-KRFGSFKKPFEIEGSYVLTSEDLSTSSMVRRLVTNMMNSTLRKLETLATEPLRKSSITITQV-LAKRSRLVIEG--EMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAE-VFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQ-VALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFG 498
BLAST of EWM25396.1 vs. NCBI_GenBank
Match: gi|873239205|emb|CEL94518.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 126.716 bits (317), Expect = 1.242e-28 Identity = 88/272 (32.35%), Postives = 142/272 (52.21%), Query Frame = 0 Query: 100 STVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTL--------FPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVT--DVGKRAAFLYDMGAFFSSFF 361 S +V+ +A ++++ R GL + + ++L G PLV+ +F ++ + L ISGG +EI L IR +LLL RR + +R PFE G Y LT +D+ S I +++ L N +L + P L L V+I+ V + R L + G A+ + + PF + TGVG+ +GH+VYL D + L P V V + + ++ +D+GDN I+ L + + + +T+ AR ++ PFQV RAAF D+ S FF Sbjct: 250 SRLVQWIAVNIMQRCCRSAKGLTIQIDLLRRRNLLRGIFPLVRIRFRKLAFQALSISGGAEVEIRELAIRWGSLLL-RRQTFLRGPFETFGTYTLTSEDLEDSPFINRLLRQLANKLLSKMEGTWDGRNIPKLML----VTIEHVTVKDGR-LCITGIAHTVLN-TMTPFRIRTGVGVTSNGHVVYLRDTVVTLGVGTPWEVAVNV-RLESWTLDMGDNVEIDTLVLAKNK-ITLVARCQLSSVEPFQVVPPQSSDRAAFSIDLARLLSKFF 512
BLAST of EWM25396.1 vs. NCBI_GenBank
Match: gi|299469746|emb|CBN76600.1| (hypothetical protein Esi_0000_0316 [Ectocarpus siliculosus]) HSP 1 Score: 64.6994 bits (156), Expect = 5.288e-8 Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 0 Query: 91 SMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLA--RRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLR 218 S R+P S + + TA+ L+V+V AR+N D + G + F++ + E++Q+SGG E+ G+++ L LL RRL +R+P E G T DV+ S IR + Q +VN+ LR Sbjct: 13 SFGGRRPFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALR 141 The following BLAST results are available for this feature:
BLAST of EWM25396.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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