rna5273, rna5273 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5273
Unique Name	rna5273
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2617
Alignment location	CM002465.1:585904..587589 -

Link to JBrowse

Properties


Property Name	Value
Product	Prolyl 4-hydroxylase, alpha subunit
Orig transcript id	gnl\|cribi\|Naga_100005g62.6710.mrna
Orig protein id	gnl\|cribi\|Naga_100005g62.6710
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:585904..587589 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g62	gene5093	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25416.1	cds5260	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5273	rna5273-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:585904..587589-
coding sequence from alignment at CM002465.1:585904..587589-

mRNA sequence

>rna5273 ID=rna5273|Name=rna5273|organism=Nannochloropsis gaditana|type=mRNA|length=2617bp
CGCGTCAAAAGCTGAAAATCAGCACCATATTATGCTAGCTCAATGCTCAT
TTTGGTAATGTCTTGACAGACATCCTGTGATGCCTTTTTTCGCGGCCGCA
GAGGGAATCGTGGCTCCAGATCCGGGTCAGATAAAGGCAGTCTATGAAGA
TGAGGACTCCCCAAAAGAGCCTGCGCGGGAAGAGTGGTGGAAGTGCCTTG
CTCTTCTCGATTCAGACACGGTGGGGCTGGGCTCGAACCTCTGCTCGTTC
TGCATCTTGGACGTCAGACCTAGTCAGGGATACACAACCCTTTACTCATG
GCGGTCCGAGGTTGGCTTGGAGCTCCTGGACATGCAATTTTGCAGGAAAA
CTAAAGAGTGGTGGACTCTGGAAAAAAAACTCGGAGAATCCCAAAATCTT
ATGCTGGTTAGGTACTCTGATAGGCCCCGCACGGGCGAACGGGTGGTCGC
ATTGATTAGTTCAAATGAGGCGGTCTTGAGCGTGAGTATAAATGGAACTG
TGACACTCAGCCTTCCAGGCGGCATTGTGGAATTTTGGAGATACATTTCA
TTACACAAGCATACACAAGAAATTCGGCGACTTGGAATTCTGTCGCTGGA
GCCGATTTTGGGCGTAAGCATGGAGCATGTGTTGTTCACGCATGCTGTGC
TGACGGGACCTGTGCTAACGCTCGGTACTTCGAGTGATGTGTGGTTTGTC
CAACTGAGAAGAAAGACCCTTCAGGCGGCTTGTAAAGAAAGTAAACGGGG
TTTAAAAGAGGATATCACGTACGACACGCAAGGTCTCCTGGACTGTCAGT
CGGGAGGCGTTGGCGGCCTTCCTGCCTGCTACGAAGGGTGCCCGCTGGGA
AGCTTTATTGACCGTGATGATATGCTGGACTGTGCCCTGCCTGAGCAGGA
CGAATGTTATGCAGGGACCCTGCGGGATCAGGAGAGAGCTAGGCCGAAAT
GGGTTCCTGAGTGCCCAAAAGATTGTCCAGAATATACAGAGGCGGCCATG
GTTCTCGCTCGTGTAAAGTTCCACCGCCCAGGATACTTGATATCTGAAAT
TAAGGTCATATCGGTAGGGTCAACATGGGTTGAGCTCTTGCTCGTTTCTG
GCCAAGGGGCATGCCTATACCGCGTCTCCAAGTTGCGGATGGGCACGCAC
GAGGATGCTGTCTTGCTCTCATCCTCAGAGGCACTCAGAGGGGACGGGAG
GGAGGGCGCGGCCGTGGTGTTTCGTCTAGCCGATCTTCAGTTAAAGACCA
AAGTTCTGGCCACGGCCAAGGGTGCTGCAGCCGAGGCTCCTTGGCTGTTC
GCCTTGACCCTTTCGGGGATAGAGGTGTGGTGCCTTCCCCCCTCTGGGCA
TCGACCTGCAGACTTCTCGTCAAGCAGACTGCTGGTGCAGCGTCTAGAAT
ACAGGCAGCGACTGGAAAGGCTTCCTCCCGTCAGCATGGTCGCGACAGGC
AACGCGGTCATTTTTTTGGCAAACCCTCACGGTCAGACGCCGCCCTCCTT
GGCCGAGATGCTCTTTCACACGGTACCTCGGCCCTCCCTTGCCCGCACAC
CCGAGTTGAGCTCTGGCGTCCTTGACTCTGACTCCTATAATGGGCCTATT
ACACCAGATGGGGCGTTCAGTATCGGGTATGGACTTCTGTCATTACATAC
CCTCTCCTTAGCTGAAATTTATGAGCAACTGCGCACAGAAATTATGCATG
CCTTACTCATGGAAGAGGGTATGCCCGAGGATGGTATGGAGGAAGACAAC
GAGGATTTCGCGGCCACCCGATTTGTTGAAGGCGAAATGCTGGACTCCTC
TGTTTATGGCATTCAGTCTCCTCGCGTCGTCTACCAGAGTGGTACAGAGC
TACTAGCTATACTGTACGCTCATTTACGGGTTGCTGCTGATGTGGGGGGC
ATGGAGTGCAGCAGCATCGTATGGAGAAGCGAAGAATATAAGATGGATCG
TGAGGGTTTGAATGACGATTCAATCGTAGAGAGGGCACGAAGGAGACACG
TGGAAAAATTGTACCGTCAGCAGCAGAAAGATTGTGCCACTATATTGGGA
ATGCTTTGCCTGGACCCGCGAGCTGAGGGAGTTTCATCCGACACTTTGCA
GGCGTGTGATTGGTTTTCCGATAGCAACACGCCTCTTCTCACTGTGTGTA
TCAAATTGTTGAAATTACGAACCAAGAAGGATGCTTTTGCGACGAAGGAG
CAGCAGCAGACGCGTCCGATGGCAAGAGCGGAGAGCGCGGCTTTGCGCAG
AGATCCTGCGGGACTTCTCGTTCACTTTCTCAGGAAGAGGTGTTCGCGCA
TGGACAACTGGATTGAAGAAAAGCGTCTGGAGGAAAAGCGCCCCTGTCAA
ATCATAGAAGGGAGATCGTCCCTCGACATATGGTCTGATGTCTTGACACT
TTGTTGCGACATCGGCGAAGAGAAATTCCTTTCGTGGGCCGTGCTGCACT
CCTGGCTTCCTCGCTTGCCTGAATGTCGCGATGTACTTAGACATATAATC
GATACCAGATGTTTTGAGAGCAGAGAGAAATTGCTTATGGCATTGGTAAA
GTAAAAGGGAAATGCTGAAAACAAAAACATTTTGGCGATCTTTTCTCAGC
CAGTGAGTGTTTAAATG

protein sequence of rna5273

>rna5273-protein ID=rna5273-protein|Name=rna5273|organism=Nannochloropsis gaditana|type=polypeptide|length=526bp
MKNSSQEIDSPRPQHLQPIPASGEASFSTALQRKYEDLFPPTAQVKLKEA
LHDNGVLDENLFSKHKAATRGRRSEAARSYSILPFQIKRLFFSRNAGDIR
LNNRLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTDCTV
DEQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGY
RHNDFFDVHHDMGTYNKDTGAVEAVSPRRLVTFFVYLNSLPRGQGHTVFP
KLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAIN
IWITDKNLQALAFSNSGVVLDPSKVISGKRTILASIDPPCCICRSHKQQN
LFKTCDHCDLSYHRLCLSPEERPSAPNGPRRFWTCPRCPGKRPRPGDFCE
VCGGGDREHLIVLCDSCERGFHTTCLGVRKVPKEAYFCDSCRAKEKVKAR
TIRSREEGACHMCGSIDRPHHILLCDGCDGGWHLQCVGLARVPRGSWFCR
LCTKTASRRRKGPAKRSKKYEAKSNK

mRNA from alignment at CM002465.1:585904..587589-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5273 ID=rna5273|Name=rna5273|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp|location=Sequence derived from alignment at CM002465.1:585904..587589- (Nannochloropsis gaditana)
CTTGCGACATAAAGTGTCCATGAAAAACTCAAGCCAAGAAATCGATTCAC
CGAGACCTCAGCATCTCCAACCCATCCCTGCTTCCGGAGAGGCATCTTTT
TCAACGGCCTTGCAACGTAAATATGAAGATCTATTTCCGCCCACAGCTCA
AGTGAAACTAAAAGAAGCTTTACACGATAATGGCGTACTAGATGAGAACC
TTTTCTCAAAACACAAGGCTGCAACACGTGGGCGTCGTTCAGAAGCTGCT
CGCTCCTACAGCATTTTGCCTTTCCAGATCAAACGCCTTTTTTTCAGCCG
GAACGCGGGAGACATCCGACTAAACAATCGACTGCTTAAATTGTTGCATC
GTAATCCGCACGTTTATGCTATTGACGATTTTTTGTCCGGGACAGAGTTT
GAAAACTTGGGGCATTTGATTGACCAGCAGTTCGGCAAATTTCGTGCCTC
GTATACGGATTGCACCGTTGACGAGCAAGTAAGAAATGCAAGCAGAACCT
CGTCTTTTATTTCACTGCGCAAGGGTGGGGACAGTAAAGTGCGAGCAGTC
GAAAATCGTGCAGCCGAAATCGTGGGGCTGCCTCCAGAGAACACGGAGCC
TCTTCAGATAGTAGGTTATAGGCACAATGACTTCTTCGACGTTCACCACG
ACATGGGCACCTACAATAAAGACACAGGCGCCGTAGAAGCGGTGAGCCCG
AGGCGTCTTGTGACTTTTTTTGTCTACTTGAACAGTCTGCCCCGCGGACA
AGGCCATACTGTTTTCCCCAAACTTAATGGCGGTCGGTTTTCAATCAAAC
CCAAACGCCTGAGGGCACTTCTCTGGTGTAATGTCTTGGAAGACGGTAGT
CCAGACCCTCGCTTAATCCATCGCGGCGATCCTATCCGCAAGGAGGGTTT
CATGAAGTTTGCGATCAATATATGGATCACGGACAAGAATTTGCAGGCCC
TTGCCTTCTCCAATTCCGGGGTCGTTCTGGACCCTTCCAAGGTCATTTCA
GGCAAACGCACCATTCTTGCTTCCATCGATCCACCTTGTTGTATATGTAG
AAGCCATAAACAGCAGAACTTGTTCAAGACCTGTGACCACTGTGATCTCT
CCTATCACCGGCTTTGTCTCTCGCCCGAAGAGCGGCCTAGCGCTCCGAAC
GGTCCTCGCCGCTTTTGGACGTGCCCCAGGTGCCCTGGAAAGAGGCCGCG
GCCGGGGGACTTTTGCGAAGTCTGTGGTGGAGGCGATAGAGAACATCTGA
TCGTGCTCTGCGACTCGTGCGAACGGGGTTTTCATACCACATGTCTGGGA
GTGCGCAAAGTACCAAAAGAGGCGTATTTTTGTGACTCTTGTCGAGCGAA
AGAGAAGGTGAAAGCCCGCACGATTAGGTCGCGGGAGGAGGGCGCATGCC
ATATGTGTGGTAGTATTGACAGGCCACATCATATCTTGCTTTGCGATGGA
TGCGACGGAGGGTGGCATTTACAATGTGTAGGGCTCGCGCGGGTACCTCG
AGGAAGCTGGTTTTGCCGTTTGTGCACGAAGACTGCCAGTCGAAGGCGAA
AAGGTCCCGCAAAGAGGAGCAAAAAGTACGAAGCAAAGAGTAATAAGTGA
GTTGTGGACACTTACGGTGGATCTTGTAGGAAAAGTCTACGTATGAGTGC
AAAAAGAGCACTCATTTAAACACTCACTGGCTGAGA

Coding sequence (CDS) from alignment at CM002465.1:585904..587589-

>rna5273 ID=rna5273|Name=rna5273|organism=Nannochloropsis gaditana|type=CDS|length=1581bp|location=Sequence derived from alignment at CM002465.1:585904..587589- (Nannochloropsis gaditana)
ATGAAAAACTCAAGCCAAGAAATCGATTCACCGAGACCTCAGCATCTCCA
ACCCATCCCTGCTTCCGGAGAGGCATCTTTTTCAACGGCCTTGCAACGTA
AATATGAAGATCTATTTCCGCCCACAGCTCAAGTGAAACTAAAAGAAGCT
TTACACGATAATGGCGTACTAGATGAGAACCTTTTCTCAAAACACAAGGC
TGCAACACGTGGGCGTCGTTCAGAAGCTGCTCGCTCCTACAGCATTTTGC
CTTTCCAGATCAAACGCCTTTTTTTCAGCCGGAACGCGGGAGACATCCGA
CTAAACAATCGACTGCTTAAATTGTTGCATCGTAATCCGCACGTTTATGC
TATTGACGATTTTTTGTCCGGGACAGAGTTTGAAAACTTGGGGCATTTGA
TTGACCAGCAGTTCGGCAAATTTCGTGCCTCGTATACGGATTGCACCGTT
GACGAGCAAGTAAGAAATGCAAGCAGAACCTCGTCTTTTATTTCACTGCG
CAAGGGTGGGGACAGTAAAGTGCGAGCAGTCGAAAATCGTGCAGCCGAAA
TCGTGGGGCTGCCTCCAGAGAACACGGAGCCTCTTCAGATAGTAGGTTAT
AGGCACAATGACTTCTTCGACGTTCACCACGACATGGGCACCTACAATAA
AGACACAGGCGCCGTAGAAGCGGTGAGCCCGAGGCGTCTTGTGACTTTTT
TTGTCTACTTGAACAGTCTGCCCCGCGGACAAGGCCATACTGTTTTCCCC
AAACTTAATGGCGGTCGGTTTTCAATCAAACCCAAACGCCTGAGGGCACT
TCTCTGGTGTAATGTCTTGGAAGACGGTAGTCCAGACCCTCGCTTAATCC
ATCGCGGCGATCCTATCCGCAAGGAGGGTTTCATGAAGTTTGCGATCAAT
ATATGGATCACGGACAAGAATTTGCAGGCCCTTGCCTTCTCCAATTCCGG
GGTCGTTCTGGACCCTTCCAAGGTCATTTCAGGCAAACGCACCATTCTTG
CTTCCATCGATCCACCTTGTTGTATATGTAGAAGCCATAAACAGCAGAAC
TTGTTCAAGACCTGTGACCACTGTGATCTCTCCTATCACCGGCTTTGTCT
CTCGCCCGAAGAGCGGCCTAGCGCTCCGAACGGTCCTCGCCGCTTTTGGA
CGTGCCCCAGGTGCCCTGGAAAGAGGCCGCGGCCGGGGGACTTTTGCGAA
GTCTGTGGTGGAGGCGATAGAGAACATCTGATCGTGCTCTGCGACTCGTG
CGAACGGGGTTTTCATACCACATGTCTGGGAGTGCGCAAAGTACCAAAAG
AGGCGTATTTTTGTGACTCTTGTCGAGCGAAAGAGAAGGTGAAAGCCCGC
ACGATTAGGTCGCGGGAGGAGGGCGCATGCCATATGTGTGGTAGTATTGA
CAGGCCACATCATATCTTGCTTTGCGATGGATGCGACGGAGGGTGGCATT
TACAATGTGTAGGGCTCGCGCGGGTACCTCGAGGAAGCTGGTTTTGCCGT
TTGTGCACGAAGACTGCCAGTCGAAGGCGAAAAGGTCCCGCAAAGAGGAG
CAAAAAGTACGAAGCAAAGAGTAATAAGTGA

Synonyms

Publications