EWM25416.1, cds5260 (CDS) Nannochloropsis gaditana

Overview
NameEWM25416.1
Unique Namecds5260
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:585990..587570 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25416.1
ProductProlyl 4-hydroxylase, alpha subunit
Orig transcript idgnl|cribi|Naga_100005g62.6710.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:585990..587570 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO:0003824catalytic activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418L-ascorbic acid binding
GO:0005506iron ion binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR006620Pro_4_hyd_alph
IPR001965Znf_PHD
Homology
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|585107177|gb|EWM25416.1| (Prolyl 4-hydroxylase, alpha subunit [Nannochloropsis gaditana])

HSP 1 Score: 1087.79 bits (2812), Expect = 0.000e+0
Identity = 526/526 (100.00%), Postives = 526/526 (100.00%), Query Frame = 0
Query:    1 MKNSSQEIDSPRPQHLQPIPASGEASFSTALQRKYEDLFPPTAQVKLKEALHDNGVLDENLFSKHKAATRGRRSEAARSYSILPFQIKRLFFSRNAGDIRLNNRLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTDCTVDEQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAVEAVSPRRLVTFFVYLNSLPRGQGHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAINIWITDKNLQALAFSNSGVVLDPSKVISGKRTILASIDPPCCICRSHKQQNLFKTCDHCDLSYHRLCLSPEERPSAPNGPRRFWTCPRCPGKRPRPGDFCEVCGGGDREHLIVLCDSCERGFHTTCLGVRKVPKEAYFCDSCRAKEKVKARTIRSREEGACHMCGSIDRPHHILLCDGCDGGWHLQCVGLARVPRGSWFCRLCTKTASRRRKGPAKRSKKYEAKSNK 526
            MKNSSQEIDSPRPQHLQPIPASGEASFSTALQRKYEDLFPPTAQVKLKEALHDNGVLDENLFSKHKAATRGRRSEAARSYSILPFQIKRLFFSRNAGDIRLNNRLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTDCTVDEQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAVEAVSPRRLVTFFVYLNSLPRGQGHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAINIWITDKNLQALAFSNSGVVLDPSKVISGKRTILASIDPPCCICRSHKQQNLFKTCDHCDLSYHRLCLSPEERPSAPNGPRRFWTCPRCPGKRPRPGDFCEVCGGGDREHLIVLCDSCERGFHTTCLGVRKVPKEAYFCDSCRAKEKVKARTIRSREEGACHMCGSIDRPHHILLCDGCDGGWHLQCVGLARVPRGSWFCRLCTKTASRRRKGPAKRSKKYEAKSNK
Sbjct:    1 MKNSSQEIDSPRPQHLQPIPASGEASFSTALQRKYEDLFPPTAQVKLKEALHDNGVLDENLFSKHKAATRGRRSEAARSYSILPFQIKRLFFSRNAGDIRLNNRLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTDCTVDEQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAVEAVSPRRLVTFFVYLNSLPRGQGHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAINIWITDKNLQALAFSNSGVVLDPSKVISGKRTILASIDPPCCICRSHKQQNLFKTCDHCDLSYHRLCLSPEERPSAPNGPRRFWTCPRCPGKRPRPGDFCEVCGGGDREHLIVLCDSCERGFHTTCLGVRKVPKEAYFCDSCRAKEKVKARTIRSREEGACHMCGSIDRPHHILLCDGCDGGWHLQCVGLARVPRGSWFCRLCTKTASRRRKGPAKRSKKYEAKSNK 526          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|873237554|emb|CEL97705.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 171.785 bits (434), Expect = 9.138e-45
Identity = 106/296 (35.81%), Postives = 152/296 (51.35%), Query Frame = 0
Query:   86 QIKRLFFSRNAGDI-RLNNRLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYT-DCTVDEQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAVE-------------------------------AVSPRRLVTFFVYLNSLP-RGQGHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAINIWITDKNLQALAFSNSGVVLDPSKVISGKRTILASIDPPCCICRSHK 347
            Q KRLF++     + R+  R L+L+HR P++YA D+FL+ +E   +     Q   +F+ S+T D   +E V +  RTS++  L K G + +R +E RAA+ VGLP EN EPLQ++ Y    +FD+HHD G    D  AV                                A  PRR++T FVYL SLP    G T FP +N  RF   P+R RAL W N+  DG+ DPR++H+  P   +G  K  +N+WITD    AL     G V  PS+   G  T + +    C + ++H+
Sbjct:   25 QFKRLFYTSKPQAVERICGRTLELVHRTPNIYACDEFLTESELSYIAQYYSQHHDEFQRSFTQDLENEELVYDECRTSTYTHLPKCGSTVIRNIERRAADCVGLPHENVEPLQLLSYAPGQYFDIHHDAGRLEGDVDAVGLKLPGAASGGRSREDFQDSPPDIRVVMPDAFAEEPRRILTAFVYLTSLPDSAGGETDFPLIN-QRF--HPRRGRALFWSNLFPDGTADPRVVHQARPT-LDGHRKMGMNVWITDTPQTALV----GTVSQPSRQEHGTHTTVRA----CSLSQAHR 308          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|1210521646|dbj|GAX19636.1| (hypothetical protein FisN_19Hh216 [Fistulifera solaris])

HSP 1 Score: 136.732 bits (343), Expect = 8.606e-33
Identity = 78/229 (34.06%), Postives = 125/229 (54.59%), Query Frame = 0
Query:   86 QIKRLFFSRNAGDIRLNN--RLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTDCTVD-EQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAVE-----AVSPRRLVTFFVYLNSLPRGQGHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAINIWITDK 306
            ++  LFFS    D  L++  +  + +H  P++Y +++FL+  E  +L   +  +  +F+ S+ D   +   +    RTS+F+S  K  D  +  +E RAA+++G+ P   E LQ+V Y    FF +HHD+G Y+++   VE       SPRRLVT F YLN    G G T FPK    +  ++P    A+L+ NVL DG PD R +H G+P      +K+ +NIW  ++
Sbjct:   72 RLNELFFSATP-DTALSSYKKPWRKVHAEPNIYVLENFLTTKEISHLMDFVATK--RFQRSFVDGENNTSSIDRWHRTSTFLSFAKQHDKTIATIEQRAADLLGIQPRALEALQLVRYEQGQFFGIHHDLGIYDEEEDTVELPPKTTWSPRRLVTLFCYLNDCSEG-GATYFPK---AQLRVQPVAGSAVLFSNVLSDGMPDVRTLHAGEPPTSTQCVKYGLNIWFCEE 293          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|1210531780|dbj|GAX09747.1| (hypothetical protein FisN_19Lh216 [Fistulifera solaris])

HSP 1 Score: 129.413 bits (324), Expect = 3.371e-30
Identity = 74/228 (32.46%), Postives = 121/228 (53.07%), Query Frame = 0
Query:   86 QIKRLFFSRNAG-DIRLNNRLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTDCTVD-EQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAV-----EAVSPRRLVTFFVYLNSLPRGQGHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAINIWITDK 306
            ++ +LFFS      +    +  + +H  P++Y +++FL+  E  +L   +  +  +F+ S+ D   +   +  + RTS+F+S  K  D  +  +E RAA+++G      E LQ+V Y    FF VHHD+G Y+++   V        SPRRLVT F YLN    G G TVFPK    +  ++P    A+L+ NV+  G PD R +H G+P      +K+ +NIW  ++
Sbjct:   72 RLDQLFFSSTPKRALSSYKKPWEKVHAEPNIYVLENFLTTKEISHLMEFVATK--RFQRSFVDGENNISSIDRSHRTSTFLSFAKQHDKTIATIEQRAADLLGTQTRALEGLQLVRYEQGQFFGVHHDLGIYDEEEDTVALPPKTTWSPRRLVTLFCYLNDCSEG-GATVFPK---AQLRVQPAAGNAVLFSNVMSGGMPDVRTLHAGEPPTSPQCVKYGLNIWFCEE 293          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|219129000|ref|XP_002184687.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403796|gb|EEC43746.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 125.561 bits (314), Expect = 9.918e-30
Identity = 83/207 (40.10%), Postives = 114/207 (55.07%), Query Frame = 0
Query:  109 LHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTDCTV---DEQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVG-LPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAV-----EAVSPRRLVTFFVYLNSLPRGQGHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAINIWITDK 306
            +H +P++Y I+DFL+ TE + L   I    GKF+ SY D      +  V    RTS+F+S  K  DSKV ++E +AA I+G       EPLQ+V Y    FF  HHDMG   +D G V        S RRLVT F YLN + +G G T F         + PK  RA+++ NVL DG PD R +H G+P+     +K+ +NIWI ++
Sbjct:    2 VHSSPNIYIIEDFLTPTELDYLRSKICA--GKFQRSYVDAIESGGNSIVDKEHRTSTFLSFGKQQDSKVASIEAKAATILGCWSSRIVEPLQLVRYLPGQFFGEHHDMGDLQQD-GTVALPPKSLFSKRRLVTLFCYLNKVEKG-GATGFRYCE---LKVPPKPGRAVMFSNVLPDGMPDSRTVHSGEPVLDG--VKYGLNIWICEE 199          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|1072228670|gb|OEU13405.1| (hypothetical protein FRACYDRAFT_189308 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 120.939 bits (302), Expect = 3.125e-27
Identity = 79/224 (35.27%), Postives = 118/224 (52.68%), Query Frame = 0
Query:   94 RNAGDIRLNNRLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTD---CTVDEQ----VRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGT-YNKDTGAV---EAVSPRRLVTFFVYLNSLPRGQGH-TVFPKL-NGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKE-GFMKFAINIWI 303
            ++  +I++    +K       +Y ID+FL+  E       I      F  S+ D   C    Q    V ++ RTS+F S +K  DSK+ A+E R A ++G      E LQ+V Y+  +FF +HHD+G   + DT  +   +  S RRLVT F YLN+L   +G  T FP + +     +KPKR RA+LW N+   G PDP+ IH G+ +  E G  K+ +NIW+
Sbjct:   57 QSKNEIKVRRATVKPYPEEASIYVIDNFLTEAELVYFDRKIATI--PFERSFVDNAECYDKRQPATLVDDSHRTSTFYSFKKSHDSKISALERRIATMLGCWVHQIEALQLVRYQPGEFFGIHHDLGNLLDDDTVQLPPKDHGSKRRLVTLFCYLNTLQDDEGGCTYFPNVGSDSHLRVKPKRGRAVLWSNIGIGGKPDPKTIHAGETVISEAGTKKYGLNIWV 278          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|873231776|emb|CEM07669.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 118.627 bits (296), Expect = 1.618e-24
Identity = 81/212 (38.21%), Postives = 108/212 (50.94%), Query Frame = 0
Query:  112 NPHVYAIDDFLSGTEFENLGHLID---QQFGKFRASYT--DCTVDEQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDM-----------GTYNKDTGAVEAVSPRRLVTFFVYLNSLPRGQGH-TVFPKLNGGRFSIKPKRLRALLWCNVLE-DGSPDPRLIHRGDPIRKEGFMKFAINIWITD 305
             P +YAID+FL   E  +L   I+   QQ G FR S T  D  V E++R   R+SS + + K     VR +E RAA   GLP  + EPLQIV Y+  + + VHHDM           G Y       E     R+ T  VYL+SL  G G  T FP   GG     P R  A++W N+ + D +PD R  H G  I + G  K+A+NIW+++
Sbjct:  141 QPPIYAIDNFLREEELAHLALFIELKEQQSGGFRRSLTEDDRGVPEEMRE--RSSSSVRIPKAATHLVRNIERRAAACFGLPASHVEPLQIVRYQRGEEYRVHHDMVELHKKGRGWGGVYLDSPSDEEKAKGVRVGTILVYLHSLDNGVGGCTHFPLPQGG-LDFTPVRGLAIMWSNIKDADLTPDLRTAHEGKKILRSGCNKYALNIWVSN 349          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|167516714|ref|XP_001742698.1| (hypothetical protein, partial [Monosiga brevicollis MX1] >gi|163779322|gb|EDQ92936.1| predicted protein, partial [Monosiga brevicollis MX1])

HSP 1 Score: 108.227 bits (269), Expect = 2.946e-24
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 0
Query:  147 DCTVDEQVRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAVEAVSPRRLVTFFVYLNSLPRGQ---GHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPI 289
            D  + + V +A RTS F  L K  DS V  +E RAA+++G      EPLQ+V Y+    F +HHD GT  +  G VE V+P R  T FVYLN++P  +   G+T FP+L      ++PKR RA+++ N+  DG+ +P  IH   P+
Sbjct:    1 DNDLGQPVTSAYRTSKFTWLEKSADSLVAQIERRAADLLGTEALCIEPLQVVSYQQGQQFKLHHDAGTLLERDGGVELVTPLRTATIFVYLNTIPATRSCAGYTHFPRLG---LKVQPKRGRAVVFPNLRADGTVEPATIHAALPM 143          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|294889729|ref|XP_002772943.1| (prolyl 4-hydroxylase alpha subunit, putative [Perkinsus marinus ATCC 50983] >gi|239877523|gb|EER04759.1| prolyl 4-hydroxylase alpha subunit, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 106.301 bits (264), Expect = 2.639e-21
Identity = 91/290 (31.38%), Postives = 132/290 (45.52%), Query Frame = 0
Query:   40 PPTAQVKLKEALHDNGVLDENLFSKHKAATRGRRSEAARSYSILPFQIKRLFFSRNAGDIRLNNRLLKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYT--------DCTVDEQV--RNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAVEAVSPRRLVTFFVYLNSLPRGQ-GHTVFPKLNGGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRGDPIRKEGFMKFAINIWITDKNLQALAFSNSGV 318
            P TA+  ++         DEN+F     A   R S+  +   +   +  +   +   G  RL+     ++ R+P V  + DFL+  E E   ++I    GK+R S          D   D+ V  R+  RTSS   L    D  V  +E RAA +VG P ++ E L ++ Y   +FF  HHD G +             R  T F+ LN +PRG  G T+FP L      I+PK   AL+W N LEDG  D R++H   P    G  K+AIN ++ +K +  L  S S V
Sbjct:  109 PQTARQMVERKEEQAKASDENIFE----ARLKRDSDGEKKPPVPVDENSKTVGNSEEGVTRLS---AYVICRSPKVRLVPDFLTPEECE---YMISLAEGKWRPSTVGRSSSSISDGKSDKYVNKRSKGRTSSSFMLLHSQDDVVAEIERRAASLVGFPADHVERLNMLRYESGEFFGQHHD-GAF-------------RPWTVFITLNDIPRGAGGETLFPALG---LKIRPKAGTALVWPNCLEDGQADDRVVHEALP--PTGVRKYAINCFVNEKPVAELVRSTSSV 369          
BLAST of EWM25416.1 vs. NCBI_GenBank
Match: gi|1001616502|gb|KXS20245.1| (hypothetical protein M427DRAFT_52489 [Gonapodya prolifera JEL478])

HSP 1 Score: 98.9821 bits (245), Expect = 4.049e-19
Identity = 75/222 (33.78%), Postives = 105/222 (47.30%), Query Frame = 0
Query:  106 LKLLHRNPHVYAIDDFLSGTEFENLGHLIDQQFGKFRASYTDCTVDEQ------VRNASRTSSFISLRKGGDSKVRAVENRAAEIVGLPPENTEPLQIVGYRHNDFFDVHHDMGTYNKDTGAVEAV-SPRRLVTFFVYLNSLPRGQGHTVFPKLN-----------------GGRFSIKPKRLRALLWCNVLEDGSPDPRLIHRG-DPIRKEGFMKFAINIW 302
            + ++ R+P +  ID+FL   E E   HL+      +  S    T D++      V +  RTSS   L + GD  +R VE RAA   G P  NTE LQ V Y     + VHHD         A   +   +R+ TFFVYLN +P+G G T FP +N                  G  ++ P++ RA  W NV ++G+ D R +H G  P+  E   KF +NIW
Sbjct:  119 VHIISRDPLLMVIDNFLRTGEPE---HLVQTATPLYSRSTVVSTTDDEENKEFRVVSDYRTSSTAYLPRNGDPVIRCVEARAAAFSGYPVRNTESLQSVHYGVGQQYKVHHDWFPPEDPISAPHLLRGGQRVSTFFVYLNDVPKG-GRTWFPSVNVSALAPGAGGLGWGVDDEGGVAVWPRKGRAAFWINVDKEGNGDSRTLHAGMPPLDGE---KFGLNIW 333          
The following BLAST results are available for this feature:
BLAST of EWM25416.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107177|gb|EWM25416.1|0.000e+0100.00Prolyl 4-hydroxylase, alpha subunit [Nannochlorops... [more]
gi|873237554|emb|CEL97705.1|9.138e-4535.81unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210521646|dbj|GAX19636.1|8.606e-3334.06hypothetical protein FisN_19Hh216 [Fistulifera sol... [more]
gi|1210531780|dbj|GAX09747.1|3.371e-3032.46hypothetical protein FisN_19Lh216 [Fistulifera sol... [more]
gi|219129000|ref|XP_002184687.1|9.918e-3040.10predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1072228670|gb|OEU13405.1|3.125e-2735.27hypothetical protein FRACYDRAFT_189308 [Fragilario... [more]
gi|873231776|emb|CEM07669.1|1.618e-2438.21unnamed protein product [Vitrella brassicaformis C... [more]
gi|167516714|ref|XP_001742698.1|2.946e-2440.41hypothetical protein, partial [Monosiga brevicolli... [more]
gi|294889729|ref|XP_002772943.1|2.639e-2131.38prolyl 4-hydroxylase alpha subunit, putative [Perk... [more]
gi|1001616502|gb|KXS20245.1|4.049e-1933.78hypothetical protein M427DRAFT_52489 [Gonapodya pr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5273rna5273Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications