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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100005g60.6698.mrna |
| Orig protein id | gnl|cribi|Naga_100005g60.6698 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:579525..582363 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5271 ID=rna5271|Name=rna5271|organism=Nannochloropsis gaditana|type=mRNA|length=750bp
ATGCCCGTGCTAACCGTATTCACCCTCGATTACCACCACTTCTCTTCTTC
TCTCATACTACCTTCCGGTACTCGCGTCCTCTCTGCACTGCCCTGGCAGC
CCCTGGTGCTCTCAAGTCAACGCATCAACGGTGCTCAACACTCTACAAGC
TTTAGATTTATTCGACCAATTTTGAGCGTCGCGCAGCAGCACTGGAAGAT
TTGCAGCGCGGTATTACAAAAGCAAAAGCAAGGTCACGAGTTTGGCTCCC
GACTTGCTCCTCTATATCATTACTTGACGATATCACGTCACAACAGCCAT
TACGTGACCATGCCTTTATACCAACAACTCATCATCGCCCGCGACATTGC
TAAGGCACCGGAGCTTACAAGCCTTTTAAAGCAGTGCGCCAAGACAGTTT
TAAGCAATGGGGGCGCCATGCGCGGGTTCGAGAATCACGGCCTGCGAGCT
CTCAGCCATCGACTTCGGAATCGCCGAGCAATGGAGGAAGAGCAGAAATA
TCATTGGCGGGCACGCTATATATCCTCCTACTTCGACGTCAGCCCCGATA
CGGTAAAGGAAGTAGAGCGAGTATTACGTCTGGACGAGAATGTCCTACGA
TTCTTCACCTTGAGGCCAAAGACCCAGGCAGACCTCATCCGGACTCGCAC
CGGCTTTCGCGCTGCGTTGTGGACAGAAGAGCGTTCAGTGGAAAAAACTG
CAGAAAATGCACGCGAAGAGAAACGGAAACTGTTTCACGAGGAACCGTGA back to topprotein sequence of rna5271 >rna5271-protein ID=rna5271-protein|Name=rna5271|organism=Nannochloropsis gaditana|type=polypeptide|length=460bp
MPARMTYAFLLGLALLFHSPTSINGFFFRPSSGRYISRPQRSAPLTSVCA
VKPEDLVISPGGSNDDFSNEQELDYLEWLVRKFKRKGRMEEARELQADVR
VRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVV
VGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAA
GSNLEQRLFATNVFVRRQGMWFIAHHHATLLKAPASDKPPQNQQQQNAAL
MQQLQQSLGLNGNKIINLGGLKGQNGAGNGAGGSMGSLDDLAAQLGALER
QLGAGEPRKPRVRMLKDGKYQILSDEEEEEEEDEDEESVHRDKALTRRTV
RAIQQLFNEGRISIEQKRRLLNEIIQHSNHEVPSMVEIAYELLLRDDDAE
NSPGGESKTLPAGQKSEAAEGERTKGSKSATSGASRADDILNEFLEQCRI
IASAGEDDEE back to topmRNA from alignment at CM002465.1:579525..582363+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5271 ID=rna5271|Name=rna5271|organism=Nannochloropsis gaditana|type=mRNA|length=2839bp|location=Sequence derived from alignment at CM002465.1:579525..582363+ (Nannochloropsis gaditana)
GAGGGGAAAATGTCCCGTTGCCTTCTTTCATCAGCTAGGTCTGCATTGCT
TCCACTGACGCGCCCAAAGCATGCATGGCTCATCATTGGTGTATACCTCG
CGATGGTAGCAAGCATGTGGGCGGAGAAAAGGCGCAGTCTCGCAGCCTGC
ACGGCCAACATGGGGTACAGGGACCGGAATTGCTTGTGGGAGTGTTCGAA
GGGCGGCGTGGCGCGAAGATACTCGGCGAGGGAGACTCTCCCCTGGAGAG
ACCTGTGTGCTGGGAGTGCGGAGGACGTGCACCTCGCGGCGTCGTCAGAC
CCTTTTGTGTTGTCATGTGCCCAGTTGCTATGTAGACTACCGCCTTTTCA
CCCCCTTTTGGCATATTCCTCTTACTTGACTTCACAGGTGGGGTCAAGTA
GGATTCATAACAGTAGCATCCTTTGAAGGTTCTTCGGAAACCATGCCGGC
AAGAATGACATACGCTTTCTTACTGGGTCTTGCTCTGCTGTTTCATTCGC
CTACAAGCATTAATGGCTTCTTCTTTCGGCCATCGTCTGGACGGTACATT
TCAAGTGAGTATTTTTTCATCTCGGCGGGCAGCAGCCCCCCCTCGGACGA
AAGAAGTGATGACTCATTTTCCTCACGTCTCTCGCAGGGCCGCAACGCTC
AGCTCCTCTCACAAGTGTGTGCGCCGTTAAACCGGAAGATCTGGTCATCT
CCCCCGGAGGAAGCAACGACGATGTAAGTTCTCGTCAGGCTTTCCTTAAA
ATGCACGTCTCTGGTTGTGGAAGGTgagcttttcttccctcatGACCCGC
TCTCACTTTACGTTATTCTCCAAACCTCCTCAGTTCTCCAATGAGCAAGA
ACTGGATTACCTAGAGTGGTTGGTCAGAAAATTCAAACGGAAAgggcgga
tggaggaggcccgAGAGCTGCAGGCGGACGTGCGAGTGCGTCAAGAGTAC
GACGTGCGGGCGGTGACCAGGCTCAATGAAGTCTTCTATCAGGCCTTCAC
GAAGCAGGACCCCAAGGTGATGGCCGAGCTCTGGCTTCGAGAGCCCGAGG
TCTCGTGCATTCATCCGGGCGTGGCAGAGGTGGTCGTTGGCTACGACCGC
GTTATGCGGGTGTGGAAGGACATTCTTGCCCCGAAGCGCGCCTGGATCCG
CATCACGCCCGAGAACTcccaggtggtggtgcgcGGGAATACCGCTTTCG
CCTACTGCTTTGAGCGCGTTGTTCCCGACGCCGCAGGCTCCAATCTCGAG
CAACGCCTGTTTGCGACCAACGTCTTCGTGCGCCGGCAGGGTATGTGGTT
CATCGCACACCATCACGCAACATTGCTCAAAGCACCCGCCAGCGACAAGC
CCCCTCAAAACCAACAACAGCAGAACGCAGCCCTCATGCAACAGCTCCAG
CAAAGCTTGGGTTTAAATGGAAATAAAATCATCAATCTTGGTGGTCTCAA
AGGCCAGAATGGAGCAGGAAACGGCGCGGGCGGGTCCATGGGGTCGCTCG
ACGACTTGGCGGCACAGCTGGGAGCCCTGGAGCGGCAGCTGGGCGCGGGT
GAGCCTCGGAAACCCAGGGTGCGCATGTTGAAGGACGGGAAGTACCAGAT
TTtgtcggacgaggaggaggaggaggaagaggatgaggacgaggagagcg
tTCATCGAGACAAAGCACTTACGCGGAGGACCGTCCGGGCTATTCAGCAG
CTCTTCAATGAAGGACGCATCTCCATCGAACAGAAACGCCGCCTGCTCAA
TGAGATAATTCAACATTCCAACCACGAGGTTCCCTCTATGGTGGAGATCG
CGTACGAATTGTTGCTCCGGGACGACGACGCGGAGAACAGTCCAGGCGGG
GAGAGCAAGACACTGCCAGCCGGGCAGAAGAGCGAGGCTGCAGAAGGCGA
AAGGACAAAAGGCAGTAAGTCGGCTACGTCGGGGGCTAGTCGAGCAGATG
ATATCCTGAATGAGTTTCTCGAGCAGTGCCGCATCATTGCGTCcgcggga
gaggatgacgaggaatAAGGTAGCTCGTGAGCTTGCACAGAAGGTTTGTG
AAATATGGTCGAGTAACGGGTGCCTTGTACATTGGTGACAAGCCTTCATG
TTGCAGAGGGTCGATTCGTAGTTGAGGCTAAATCTTCTCGCTTGCGGCGG
GAGATGTGTTTGTCATCTATTAAGAAAGAAGAATGCTATCCACCTTTTGG
GCGTCTCTAAAACAAAAAAGATACATACCTTTGGtggatttcctccttcc
cctttttgaAAAATGACATGTCCTCTGTACACATGATGAGATCTAGAGGC
AATTTAAATGCTATCCGTCATAAGAAAAGCAGCCTACATCTAAGGTAGCA
AAAGAGGAGAGTTATCTTACATGCATTTCCTATGATCAACCGCTTTTTGC
TTTGCTTTCAAGATATTATACCGGCAGAAAGGAATAATCGCATGCACTGC
TTGTATTACTGTTAATCGCATGCACTGCTTGTATTACTGTTTCCGTCAAG
GCAAGCTTGGTCCATCGCGTACTTTGTTCTCAGCAATCTCACGCCCGCGC
TGAAATTCAGAGGAGCGAGTTCCCGCAAGACGGCTTTATACAATGAAACA
TTAGTAAAGCTGATAAAGGGTATTGCTGACAATGCGCAGTAGTACATTAA
AGCCAATGGAGTAACACCCTGCCGTGGCGATGCGCAGCAGTGCGTCATAG
CGTTCTCTGCTGGCGTAGTATGGACATCTGATATGCGAGCAGCGAGgacg
gacaaggaagaaTGAAAAAGACAATGAGATCCAGCCAAATAGCCCCCCAG
GCACCAAACGAATGCAAAATAATATTAAGTCTTAAAAGA back to topCoding sequence (CDS) from alignment at CM002465.1:579525..582363+ >rna5271 ID=rna5271|Name=rna5271|organism=Nannochloropsis gaditana|type=CDS|length=4149bp|location=Sequence derived from alignment at CM002465.1:579525..582363+ (Nannochloropsis gaditana)
ATGCCGGCAAGAATGACATACGCTTTCTTACTGGGTCTTGCTCTGCTGTT
TCATTCGCCTACAAGCATTAATGGCTTCTTCTTTCGGCCATCGTCTGGAC
GGTACATTTCAAGGCCGCAACGCTCAGCTCCTCTCACAAGTGTGTGCGCC
GTTAAACCGGAAGATCTGGTCATCTCCCCCGGAGGAAGCAACGACGATTT
CTCCAATGAGCAAGAACTGGATTACCTAGAGTGGTTGGTCAGAAAATTCA
AACGGAAAgggcggatggaggaggcccgAGAGCTGCAGGCGGACGTGCGA
GTGCGTCAAGAGTACGACGTGCGGGCGGTGACCAGGCTCAATGAAGTCTT
CTATCAGGCCTTCACGAAGCAGGACCCCAAGGTGATGGCCGAGCTCTGGC
TTCGAGAGCCCGAGGTCTCGTGCATTCATCCGGGCGTGGCAGAGGTGGTC
GTTGGCTACGACCGCGTTATGCGGGTGTGGAAGGACATTCTTGCCCCGAA
GCGCGCCTGGATCCGCATCACGCCCGAGAACTcccaggtggtggtgcgcG
GGAATACCGCTTTCGCCTACTGCTTTGAGCGCGTTGTTCCCGACGCCGCA
GGCTCCAATCTCGAGCAACGCCTGTTTGCGACCAACGTCTTCGTGCGCCG
GCAGGGTATGTGGTTCATCGCACACCATCACGCAACATTGCTCAAAGCAC
CCGCCAGCGACAAGCCCCCTCAAAACCAACAACAGCAGAACGCAGCCCTC
ATGCAACAGCTCCAGCAAAGCTTGGGTTTAAATGGAAATAAAATCATCAA
TCTTGGTGGTCTCAAAGGCCAGAATGGAGCAGGAAACGGCGCGGGCGGGT
CCATGGGGTCGCTCGACGACTTGGCGGCACAGCTGGGAGCCCTGGAGCGG
CAGCTGGGCGCGGGTGAGCCTCGGAAACCCAGGGTGCGCATGTTGAAGGA
CGGGAAGTACCAGATTTtgtcggacgaggaggaggaggaggaagaggatg
aggacgaggagagcgtTCATCGAGACAAAGCACTTACGCGGAGGACCGTC
CGGGCTATTCAGCAGCTCTTCAATGAAGGACGCATCTCCATCGAACAGAA
ACGCCGCCTGCTCAATGAGATAATTCAACATTCCAACCACGAGGTTCCCT
CTATGGTGGAGATCGCGTACGAATTGTTGCTCCGGGACGACGACGCGGAG
AACAGTCCAGGCGGGGAGAGCAAGACACTGCCAGCCGGGCAGAAGAGCGA
GGCTGCAGAAGGCGAAAGGACAAAAGGCAGTAAGTCGGCTACGTCGGGGG
CTAGTCGAGCAGATGATATCCTGAATGAGTTTCTCGAGCAGTGCCGCATC
ATTGCGTCcgcgggagaggatgacgaggaatAAATGCCGGCAAGAATGAC
ATACGCTTTCTTACTGGGTCTTGCTCTGCTGTTTCATTCGCCTACAAGCA
TTAATGGCTTCTTCTTTCGGCCATCGTCTGGACGGTACATTTCAAGGCCG
CAACGCTCAGCTCCTCTCACAAGTGTGTGCGCCGTTAAACCGGAAGATCT
GGTCATCTCCCCCGGAGGAAGCAACGACGATTTCTCCAATGAGCAAGAAC
TGGATTACCTAGAGTGGTTGGTCAGAAAATTCAAACGGAAAgggcggatg
gaggaggcccgAGAGCTGCAGGCGGACGTGCGAGTGCGTCAAGAGTACGA
CGTGCGGGCGGTGACCAGGCTCAATGAAGTCTTCTATCAGGCCTTCACGA
AGCAGGACCCCAAGGTGATGGCCGAGCTCTGGCTTCGAGAGCCCGAGGTC
TCGTGCATTCATCCGGGCGTGGCAGAGGTGGTCGTTGGCTACGACCGCGT
TATGCGGGTGTGGAAGGACATTCTTGCCCCGAAGCGCGCCTGGATCCGCA
TCACGCCCGAGAACTcccaggtggtggtgcgcGGGAATACCGCTTTCGCC
TACTGCTTTGAGCGCGTTGTTCCCGACGCCGCAGGCTCCAATCTCGAGCA
ACGCCTGTTTGCGACCAACGTCTTCGTGCGCCGGCAGGGTATGTGGTTCA
TCGCACACCATCACGCAACATTGCTCAAAGCACCCGCCAGCGACAAGCCC
CCTCAAAACCAACAACAGCAGAACGCAGCCCTCATGCAACAGCTCCAGCA
AAGCTTGGGTTTAAATGGAAATAAAATCATCAATCTTGGTGGTCTCAAAG
GCCAGAATGGAGCAGGAAACGGCGCGGGCGGGTCCATGGGGTCGCTCGAC
GACTTGGCGGCACAGCTGGGAGCCCTGGAGCGGCAGCTGGGCGCGGGTGA
GCCTCGGAAACCCAGGGTGCGCATGTTGAAGGACGGGAAGTACCAGATTT
tgtcggacgaggaggaggaggaggaagaggatgaggacgaggagagcgtT
CATCGAGACAAAGCACTTACGCGGAGGACCGTCCGGGCTATTCAGCAGCT
CTTCAATGAAGGACGCATCTCCATCGAACAGAAACGCCGCCTGCTCAATG
AGATAATTCAACATTCCAACCACGAGGTTCCCTCTATGGTGGAGATCGCG
TACGAATTGTTGCTCCGGGACGACGACGCGGAGAACAGTCCAGGCGGGGA
GAGCAAGACACTGCCAGCCGGGCAGAAGAGCGAGGCTGCAGAAGGCGAAA
GGACAAAAGGCAGTAAGTCGGCTACGTCGGGGGCTAGTCGAGCAGATGAT
ATCCTGAATGAGTTTCTCGAGCAGTGCCGCATCATTGCGTCcgcgggaga
ggatgacgaggaatAAATGCCGGCAAGAATGACATACGCTTTCTTACTGG
GTCTTGCTCTGCTGTTTCATTCGCCTACAAGCATTAATGGCTTCTTCTTT
CGGCCATCGTCTGGACGGTACATTTCAAGGCCGCAACGCTCAGCTCCTCT
CACAAGTGTGTGCGCCGTTAAACCGGAAGATCTGGTCATCTCCCCCGGAG
GAAGCAACGACGATTTCTCCAATGAGCAAGAACTGGATTACCTAGAGTGG
TTGGTCAGAAAATTCAAACGGAAAgggcggatggaggaggcccgAGAGCT
GCAGGCGGACGTGCGAGTGCGTCAAGAGTACGACGTGCGGGCGGTGACCA
GGCTCAATGAAGTCTTCTATCAGGCCTTCACGAAGCAGGACCCCAAGGTG
ATGGCCGAGCTCTGGCTTCGAGAGCCCGAGGTCTCGTGCATTCATCCGGG
CGTGGCAGAGGTGGTCGTTGGCTACGACCGCGTTATGCGGGTGTGGAAGG
ACATTCTTGCCCCGAAGCGCGCCTGGATCCGCATCACGCCCGAGAACTcc
caggtggtggtgcgcGGGAATACCGCTTTCGCCTACTGCTTTGAGCGCGT
TGTTCCCGACGCCGCAGGCTCCAATCTCGAGCAACGCCTGTTTGCGACCA
ACGTCTTCGTGCGCCGGCAGGGTATGTGGTTCATCGCACACCATCACGCA
ACATTGCTCAAAGCACCCGCCAGCGACAAGCCCCCTCAAAACCAACAACA
GCAGAACGCAGCCCTCATGCAACAGCTCCAGCAAAGCTTGGGTTTAAATG
GAAATAAAATCATCAATCTTGGTGGTCTCAAAGGCCAGAATGGAGCAGGA
AACGGCGCGGGCGGGTCCATGGGGTCGCTCGACGACTTGGCGGCACAGCT
GGGAGCCCTGGAGCGGCAGCTGGGCGCGGGTGAGCCTCGGAAACCCAGGG
TGCGCATGTTGAAGGACGGGAAGTACCAGATTTtgtcggacgaggaggag
gaggaggaagaggatgaggacgaggagagcgtTCATCGAGACAAAGCACT
TACGCGGAGGACCGTCCGGGCTATTCAGCAGCTCTTCAATGAAGGACGCA
TCTCCATCGAACAGAAACGCCGCCTGCTCAATGAGATAATTCAACATTCC
AACCACGAGGTTCCCTCTATGGTGGAGATCGCGTACGAATTGTTGCTCCG
GGACGACGACGCGGAGAACAGTCCAGGCGGGGAGAGCAAGACACTGCCAG
CCGGGCAGAAGAGCGAGGCTGCAGAAGGCGAAAGGACAAAAGGCAGTAAG
TCGGCTACGTCGGGGGCTAGTCGAGCAGATGATATCCTGAATGAGTTTCT
CGAGCAGTGCCGCATCATTGCGTCcgcgggagaggatgacgaggaatAA back to top
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