EWM25404.1, cds5258 (CDS) Nannochloropsis gaditana

Overview
NameEWM25404.1
Unique Namecds5258
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:579967..580078 +
Alignment locationCM002465.1:580162..580247 +
Alignment locationCM002465.1:580358..581542 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25404.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g60.6698.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:579967..580078 +
CM002465.1supercontigCM002465.1:580162..580247 +
CM002465.1supercontigCM002465.1:580358..581542 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|585107165|gb|EWM25404.1| (hypothetical protein Naga_100005g60 [Nannochloropsis gaditana])

HSP 1 Score: 949.118 bits (2452), Expect = 0.000e+0
Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0
Query:    1 MPARMTYAFLLGLALLFHSPTSINGFFFRPSSGRYISRPQRSAPLTSVCAVKPEDLVISPGGSNDDFSNEQELDYLEWLVRKFKRKGRMEEARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHATLLKAPASDKPPQNQQQQNAALMQQLQQSLGLNGNKIINLGGLKGQNGAGNGAGGSMGSLDDLAAQLGALERQLGAGEPRKPRVRMLKDGKYQILSDEEEEEEEDEDEESVHRDKALTRRTVRAIQQLFNEGRISIEQKRRLLNEIIQHSNHEVPSMVEIAYELLLRDDDAENSPGGESKTLPAGQKSEAAEGERTKGSKSATSGASRADDILNEFLEQCRIIASAGEDDEE 460
            MPARMTYAFLLGLALLFHSPTSINGFFFRPSSGRYISRPQRSAPLTSVCAVKPEDLVISPGGSNDDFSNEQELDYLEWLVRKFKRKGRMEEARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHATLLKAPASDKPPQNQQQQNAALMQQLQQSLGLNGNKIINLGGLKGQNGAGNGAGGSMGSLDDLAAQLGALERQLGAGEPRKPRVRMLKDGKYQILSDEEEEEEEDEDEESVHRDKALTRRTVRAIQQLFNEGRISIEQKRRLLNEIIQHSNHEVPSMVEIAYELLLRDDDAENSPGGESKTLPAGQKSEAAEGERTKGSKSATSGASRADDILNEFLEQCRIIASAGEDDEE
Sbjct:    1 MPARMTYAFLLGLALLFHSPTSINGFFFRPSSGRYISRPQRSAPLTSVCAVKPEDLVISPGGSNDDFSNEQELDYLEWLVRKFKRKGRMEEARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHATLLKAPASDKPPQNQQQQNAALMQQLQQSLGLNGNKIINLGGLKGQNGAGNGAGGSMGSLDDLAAQLGALERQLGAGEPRKPRVRMLKDGKYQILSDEEEEEEEDEDEESVHRDKALTRRTVRAIQQLFNEGRISIEQKRRLLNEIIQHSNHEVPSMVEIAYELLLRDDDAENSPGGESKTLPAGQKSEAAEGERTKGSKSATSGASRADDILNEFLEQCRIIASAGEDDEE 460          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|551678830|ref|XP_005842167.1| (hypothetical protein GUITHDRAFT_149726 [Guillardia theta CCMP2712] >gi|428186337|gb|EKX55187.1| hypothetical protein GUITHDRAFT_149726 [Guillardia theta CCMP2712])

HSP 1 Score: 131.724 bits (330), Expect = 4.098e-30
Identity = 126/451 (27.94%), Postives = 197/451 (43.68%), Query Frame = 0
Query:   10 LLGLALLFHSPTSI----------NGFFFRPSSGRYISRPQRSAPLTS---------------VCAVK--------PEDLVI------SPGGSNDDFSNEQELDY----LEWLVRKFKRKGRMEEARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIR---ITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHATLLKA-PASDKPPQNQQQQNAALMQQLQQSL-----GLNGNKIIN--LGGLKG-----------QNGAGNGAGGSMGSLDDLAAQLGALERQLGAGEPRKPRVRMLKDGKYQILSDEEEEEEEDEDEESVHRDKALTRRTVRAIQQLFNEGRISIEQKRRLLNEIIQHSNH-EVPSMVEIAYELLL 394
            LLGL L   SP S           +    RPSSG  I     SA                   +C  K        P+D ++      +  G +D   +EQ ++     LE  +    +  R  EA  L+ ++      D  AV + N  FY AF+ ++ ++M  +W   P V CIHPG A+ ++GYD ++ +W+++   +    +   ITP N +V VRG +AF  C E V    +    E+R+ ATNVF +  G W++ HHHA+     PAS +         A +++    SL       N ++I++  +  L+G            NG G+G  GSM         +  L       + R+      +D    +L++ E  E              +T RTV A+++L  EG I+ +QKR LL ++++H    E  S VEIAYELL+
Sbjct:   10 LLGLCL---SPVSYSFSVSNLPHYHNLVLRPSSGSTICTKMPSAANVCPNHCRAKAVSAFRDWMCCKKRDGGEELDPDDRIVDRHSDKTKSGMDDLQPDEQVIEKWVEKLETSLESAVKNERYSEASTLRDELSRMHMDDTSAVLKTNSDFYNAFSTKNIELMGTVWHNSPHVQCIHPG-AKPLLGYDNIVNMWRNMFQARDKAFKSTAITPSNVKVHVRGTSAFVTCTEEV----SSPGTERRMLATNVFRKLGGRWYLVHHHASQASVRPASIEDLLQGNSGGARVIRFDASSLREGDGHANADEIVDEIVRALQGALENAEEANQSSNGEGSGMVGSM---------MFELSDDDKDDDMRRGLRDDGRDLGDDVLNERELME-------------GVTERTVAALRKLAKEGHITRDQKRVLLTDVVEHHQAGECASEVEIAYELLV 430          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|1056032088|ref|WP_067560347.1| (DUF4440 domain-containing protein [Oceanibaculum pacificum] >gi|1016452156|gb|KZC97642.1| DUF4440 domain-containing protein [Oceanibaculum pacificum])

HSP 1 Score: 90.8929 bits (224), Expect = 2.616e-18
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0
Query:  106 DVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHATLLKAPASDKPPQNQQQQNAAL 250
            D  A+   NE FY AF  +D   M ++W +   V+CIHPG   ++ G + VM+VW+ ILA   A I ITP  ++  + G+  F  CFE        S  E  L ATN+FV+    W + HH A     P  D+PP+ ++    A+
Sbjct:    3 DRTALLFANEAFYAAFATRDMGAMEDIWAKRAPVACIHPGWG-LLEGREAVMQVWRSILAGNNAPI-ITPRGAKAFLYGDAGFVTCFE--------SLPEGFLIATNLFVKEDAAWRLVHHQA----GPTQDQPPEEEETAGRAM 133          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|1137193823|gb|OMO66494.1| (hypothetical protein CCACVL1_21113 [Corchorus capsularis])

HSP 1 Score: 90.8929 bits (224), Expect = 9.195e-18
Identity = 52/139 (37.41%), Postives = 73/139 (52.52%), Query Frame = 0
Query:   91 EARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHAT 229
            EA +++ D+RV  E    +V  +N  FY AF + D   M  LW +   V C+HPG A  + GYD VM  W+ +       + I  +N QV V+G+  +  C E V     GS+   + F TNVF R  G WFI+ HHA+
Sbjct:   41 EAAKIRDDLRVLHEDSKASVLAINSRFYDAFRRGDLATMQNLWAKGDNVCCVHPG-ANGISGYDYVMESWEVVWMNYEFPLEIELKNVQVHVKGDMGYVTCMEFV--KTKGSSWGGQ-FVTNVFERINGQWFISIHHAS 175          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|1137235285|gb|OMO97356.1| (hypothetical protein COLO4_14664 [Corchorus olitorius])

HSP 1 Score: 90.5077 bits (223), Expect = 7.580e-17
Identity = 52/139 (37.41%), Postives = 74/139 (53.24%), Query Frame = 0
Query:   91 EARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHAT 229
            EA +++ D+RV  E    +V  +N  FY AF + D   M +LW +   V C+HPG A  + GYD VM  W+ +       + I  +N QV V+G+  +  C E V     GS+   + F TNVF R  G WFI+ HHA+
Sbjct:  121 EAAKIRDDLRVLHEDSKASVLAINSRFYDAFRRGDLATMQKLWSKGDNVCCVHPG-ANGISGYDYVMESWEVVWMNYEFPLEIELKNVQVHVKGDMGYVTCMEFV--KTKGSSWGGQ-FVTNVFERINGQWFISIHHAS 255          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|720021333|ref|XP_010262696.1| (PREDICTED: F-box protein SKIP8 isoform X3 [Nelumbo nucifera] >gi|720021337|ref|XP_010262697.1| PREDICTED: F-box protein SKIP8 isoform X3 [Nelumbo nucifera])

HSP 1 Score: 88.1965 bits (217), Expect = 2.047e-16
Identity = 52/139 (37.41%), Postives = 73/139 (52.52%), Query Frame = 0
Query:   91 EARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHAT 229
            +A +++  +R+  E    +V   N  FY +F   D   M  LW +   V C+HPGV+  + GYD VM  W+ + A     + I  +N QV VRG+  +  C E  V    GSN  ++ FATNVF R  G WFI  HHA+
Sbjct:   88 QAAKIRDSLRLLHEDSRASVLAANARFYNSFRTGDLATMQSLWAKGEHVCCVHPGVSG-ISGYDLVMGSWEFVWADYEFPLEIELKNVQVHVRGDVGYVTCTE--VVKTKGSNWGKQ-FATNVFERIDGRWFICIHHAS 222          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|720021330|ref|XP_010262695.1| (PREDICTED: uncharacterized protein LOC104601157 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 89.3521 bits (220), Expect = 2.881e-16
Identity = 52/139 (37.41%), Postives = 73/139 (52.52%), Query Frame = 0
Query:   91 EARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHAT 229
            +A +++  +R+  E    +V   N  FY +F   D   M  LW +   V C+HPGV+  + GYD VM  W+ + A     + I  +N QV VRG+  +  C E  V    GSN  ++ FATNVF R  G WFI  HHA+
Sbjct:  144 QAAKIRDSLRLLHEDSRASVLAANARFYNSFRTGDLATMQSLWAKGEHVCCVHPGVSG-ISGYDLVMGSWEFVWADYEFPLEIELKNVQVHVRGDVGYVTCTE--VVKTKGSNWGKQ-FATNVFERIDGRWFICIHHAS 278          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|502739877|ref|WP_012974861.1| (hypothetical protein [Azospirillum lipoferum] >gi|288911446|dbj|BAI72935.1| hypothetical protein AZL_022970 [Azospirillum sp. B510])

HSP 1 Score: 84.7297 bits (208), Expect = 4.410e-16
Identity = 50/126 (39.68%), Postives = 68/126 (53.97%), Query Frame = 0
Query:  113 LNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDIL-APKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHATLLKAPASD 237
            LN+ FY+AFT +D   M  LW     VSCIHPG    + G D V+  W+D+L AP    I +   N +V + G+TA   C E ++ DA        L ATN+F R +G W +AHH A  +  P +D
Sbjct:   13 LNQAFYRAFTNRDAAAMEALWAETLPVSCIHPGW-TALFGRDAVLTSWRDVLRAPSG--IAVQARNERVTLHGDTALVVC-EEMLGDAV-------LAATNLFAREKGSWRLAHHQAGPIAPPRAD 127          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|720021324|ref|XP_010262693.1| (PREDICTED: uncharacterized protein LOC104601157 isoform X1 [Nelumbo nucifera] >gi|720021327|ref|XP_010262694.1| PREDICTED: uncharacterized protein LOC104601157 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 88.9669 bits (219), Expect = 5.405e-16
Identity = 52/139 (37.41%), Postives = 73/139 (52.52%), Query Frame = 0
Query:   91 EARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHAT 229
            +A +++  +R+  E    +V   N  FY +F   D   M  LW +   V C+HPGV+  + GYD VM  W+ + A     + I  +N QV VRG+  +  C E V     GSN  ++ FATNVF R  G WFI  HHA+
Sbjct:  164 QAAKIRDSLRLLHEDSRASVLAANARFYNSFRTGDLATMQSLWAKGEHVCCVHPGVSG-ISGYDLVMGSWEFVWADYEFPLEIELKNVQVHVRGDVGYVTCTEVV--KTKGSNWGKQ-FATNVFERIDGRWFICIHHAS 298          
BLAST of EWM25404.1 vs. NCBI_GenBank
Match: gi|575412894|gb|ETW98556.1| (hypothetical protein ETSY2_42625 [Candidatus Entotheonella sp. TSY2])

HSP 1 Score: 84.7297 bits (208), Expect = 6.331e-16
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 0
Query:  101 VRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHAT-LLKAPASDKPPQNQQ 244
            V Q+  +  V R NE FY+AF   D  +MA +W++     C+HPG  +++ G++ V + W  I A    ++R    +  V   G+ A+  C E +  D  GS    R+ ATNV+ +    W+I HHHA+ +L+ P S + P ++Q
Sbjct:    2 VSQDERLAQVRRANERFYRAFESLDMDLMAAVWVQNDRAKCVHPG-WDMLEGWNVVAQSWAAIFA-NTDYMRFVITDVAVHFYGHVAWVTCVENLT-DRDGSTQVSRVLATNVYEQHDDDWYIVHHHASPVLRPPPSFRDPDDEQ 143          
The following BLAST results are available for this feature:
BLAST of EWM25404.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107165|gb|EWM25404.1|0.000e+0100.00hypothetical protein Naga_100005g60 [Nannochlorops... [more]
gi|551678830|ref|XP_005842167.1|4.098e-3027.94hypothetical protein GUITHDRAFT_149726 [Guillardia... [more]
gi|1056032088|ref|WP_067560347.1|2.616e-1835.86DUF4440 domain-containing protein [Oceanibaculum p... [more]
gi|1137193823|gb|OMO66494.1|9.195e-1837.41hypothetical protein CCACVL1_21113 [Corchorus caps... [more]
gi|1137235285|gb|OMO97356.1|7.580e-1737.41hypothetical protein COLO4_14664 [Corchorus olitor... [more]
gi|720021333|ref|XP_010262696.1|2.047e-1637.41PREDICTED: F-box protein SKIP8 isoform X3 [Nelumbo... [more]
gi|720021330|ref|XP_010262695.1|2.881e-1637.41PREDICTED: uncharacterized protein LOC104601157 is... [more]
gi|502739877|ref|WP_012974861.1|4.410e-1639.68hypothetical protein [Azospirillum lipoferum] >gi|... [more]
gi|720021324|ref|XP_010262693.1|5.405e-1637.41PREDICTED: uncharacterized protein LOC104601157 is... [more]
gi|575412894|gb|ETW98556.1|6.331e-1633.10hypothetical protein ETSY2_42625 [Candidatus Entot... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5271rna5271Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications