rna5270, rna5270 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5270
Unique Name	rna5270
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2314
Alignment location	CM002465.1:577923..579037 +

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Properties


Property Name	Value
Product	30s ribosomal protein s6
Orig transcript id	gnl\|cribi\|Naga_100005g59.6691.mrna
Orig protein id	gnl\|cribi\|Naga_100005g59.6691
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:577923..579037 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g59	gene5090	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5270	rna5270-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25397.1	cds5257	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:577923..579037+
coding sequence from alignment at CM002465.1:577923..579037+

mRNA sequence

>rna5270 ID=rna5270|Name=rna5270|organism=Nannochloropsis gaditana|type=mRNA|length=2314bp
TCGTCCGCTACTCGTTTTTTGCCTGACAACCACCCCGCATCTCAAAGAGG
TGGCTCAATGACAGCCTCTGCAGTGCAAGCCGGTGGGGGGGTTGGCAGCG
GCAGGCGCGGGACGGGAGGAGGCTCTTGGCAGACGACTCTCTTCGTCCTC
CTGGCGGCAGGGGCTGTCGTGGCTGTGGCGGCGCGCACTCGGTCAAAAAA
GCGGCGGAGAACCATGTCTTATGTGCTTGGACCTGACGGGAAGCATGTAG
ACATAGGAGCTATATTCGGCTTAGATGTTGGTGGCACTCTCAGCAAGCTG
GTTTACTTCGAGCAAACACGCAAATCCCGCAAGGTGGAGAGGATGCAGCA
GCAGAAGCGCCGAAACTATACTGATAAACCTTTTCAGAAGAGTACCTTGA
AACGAAGCGCCTCGCTTGAGAACCTTAGTACGCCGCGCCACACGAAAGCA
CTGGATGCCTTCTATGCTTTCATACAAGCCGAAGGCAGTCCAGTGCGTGC
AGAGTTGCGTGACGACAACTTGACTTTCTTCTCGCGGGTCCTGGGCGGCG
AGTTGCACTTCATGCGCTTCGAAACGCGGTACATGGACAGAGTGGTCGAG
ATCGTCAAGTCCAACCGCCTACACCACAGTATTAACAGCATGGGTTGCAC
AGGGGGCGGCGCCTACAAGTTCTCAGACCTGTTCCAGGAGAGGTTGGGCA
TCGTGCTGCGGAAGATGGATGAGCTTGACTGTTTGATGAGGGGCTTGGAG
TTCGTGTTACAGCACGTTGTTGGGGAGTGCTACACATACAAGCCGGACAA
GTCTCTTTCCCTACCCTTGCCGTCTCCCGGCGCCGGGGGCCTCGACAACC
GCATGAGCTGGCGGGGCTCCCACGCCCCAGGCCTGTCCTCGCCGCACTCC
TCTTCGTGCTCCGGTGCCATATCACCCACTCAATTGCCAGAGGCTCCTCC
CCATGAAAAGGCTAAGCCCCGCCGACTCCCCGGCCTCAACCTCTCTGCCT
CCGCCCCGCTGACTGTGGCCGCGGGGTCGACCGAGGAGCGGAGGCCGCCT
CCATACGGAGACGACCGGGGACTGGGGCTGTCTACAGCTGCTGAGGTCGC
AGGCGAGTCCCTGTGCAACGATAATTCGGAGGTACCGACGCGCGAGCGAG
ACCAGCCCGCCTCGTCCTCTCCCTCATCCCCCCCCGGGCGAGGCTACGGT
CAAGAACCTCGCAGGCCACCAACGAGCACGGGAGCCGCGAACGCTGGCAA
CTTGAAGCAGGAGTGGAAATACAAGGTCCAGCGATCAGGCGAGCACGTCA
TCTATCCGTACCTGGTGGTGAACATCGGATCCGGCGTGAGCATCCTCAAG
GTGGAGGGGCCTGGCAGGTATGAACGCATATCGGGCAGCAGTCTTGGCGG
TGGAACATATTGGGGCTTGTGTCGGCTACTGACAGGCTGTAAGAGCTTCG
ATGAAGTACTTGACCTTGCAGAGATGGGGGATGCAACCATGGTGGACATG
ACCGTGGGAGACATATACGGTCGCGGCTACGACAAGTTCCATCTTTCCTC
TTCGGTTATCGCTTCGTCCTTTGGTAAACTGGCCACGTGCCACGACCCGG
GTGAGGTCATCCGGGAGGAGGACATGGCTCGCGCCCTATTGATGATGATT
ACCGGCAACATCGGGCAGGTGGCATATTTGAACGCGGTCATCCACCGAGC
CACACATATCTATTTTGTCGGTAATTTTCTTCGCCACAATAAGATTTCAT
GTCGCCGCCTTGCTTATGCTATCGACTATTGGAGTGCAGGAAAGATGGAG
GCCCTATTTCTCGAGCATGAAGGTTACTTTGGGGCGTTGGGCGCTTTTCT
CAACTCCAGTTACGTCGAGGATCTGCATGCTCACGCTCAAGAAAGCGTCG
GCGCGAGTCAAGCCAAAAGGTCCCACAGAGCCACCCCGAACAAGGACAAC
ATCGTGGCAGAGCCTGGTACCAGCGAGAGTTGCGGGATGTCAAATGGTAA
AGGAGGGAAAGGAGCGAACAAGGCTGATCACGCGGCTGCACGACTGCAGC
ACCACGAATCGATGCCAATACACTCTGACCCCCGCATTAGGGACGCACCG
CGACTTGAGTCTTTGCGCCTGGAAAAATCGTACGGGGGCTTCCTTGAGCC
AGTGGTAGACGAATCTGGAGATCCCTTGCTGGGCACGGACCAAAGAGTGT
CTGACGGGAGGACAAATCGTTCCTCGCAATCCGCAGCCGTCGCTACCGAG
GTCTGATTTATCACAAGCATGTGTTTGAGATGCTACAAAAATATATGCCG
AAAAACACAGACAT

protein sequence of rna5270

>rna5270-protein ID=rna5270-protein|Name=rna5270|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MPVLTVFTLDYHHFSSSLILPSGTRVLSALPWQPLVLSSQRINGAQHSTS
FRFIRPILSVAQQHWKICSAVLQKQKQGHEFGSRLAPLYHYLTISRHNSH
YVTMPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRA
LSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLR
FFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEEP

mRNA from alignment at CM002465.1:577923..579037+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5270 ID=rna5270|Name=rna5270|organism=Nannochloropsis gaditana|type=mRNA|length=1115bp|location=Sequence derived from alignment at CM002465.1:577923..579037+ (Nannochloropsis gaditana)
ATGCCCGTGCTAACCGTATTCACCCTCGATTACCACcacttctcttcttc
tctcatACTACCTTCCGGTACTCGCGTCCTCTCTGCACTGCCCTGGCAGC
CCCTGGTGCTCTCAAGTCAACGCATCAACGGTGCTCAACACTCTACAAGC
TTTAGATTTATTCGACCAATTTTGAGCGTCGCGCAGCAGCACTGGAAGAT
TTGCAGCGCGGTATTACAAAAGCAAAAGCAAGGTCACGAGTTTGGCTCCC
GACTTGCTCCTCTATATCATTACTTGACGATATCACGTCACAACAGCCAT
TACGTGACGTTTCAGAAAGTGCACAACAGCTTGGAGGCTTAACGAGTTGA
CGACCAAGCATGCCTTTATACCAACAAGTACGTATTTTTGCTCGATAAAT
GACCACGTCTTGATTGATTGCACCTTTGAAAGTATTTATGTCGGTCTGAT
TGCCTTTCTTGCTCATATCAATAACCGTGTCTCTTTATTTTAGCTCATCA
TCGCCCGCGACATTGCTAAGGCACCGGAGCTTACAAGCCTTTTAAAGCAG
TGCGCCAAGACAGTTTTAAGCAATGGTGAGTCGCGATGAAGTGAAAACAT
ATTCGTCTCTTGAAAAATTTGACCTCACTATCGACACGTGTTGTTGGCGT
CCAGGGGGCGCCATGCGCGGGTTCGAGAATCACGGCCTGCGAGCTCTCAG
CCATCGACTTCGGAAGTAAGTTACGGGGGAAGGTGATAGTGTATATTTGA
ATATGGAAGCTGGTGGCTCGATTGGCATTTGTCAATAATCCCTCTTGGCA
TCTGGGCTCAAACCGCACGTTGACGCACTTGACAGTCGCCGAgcaatgga
ggaagagcagaaaTATCATTGGCGGGCACGCTATATATCCTCCTACTTCG
ACGTCAGCCCCGATACGGTAAAGGAAGTAGAGCGAGTATTACGTCTGGAC
GAGAATGTCCTACGATTCTTCACCTTGAGGCCAAAGACCCAGGCAGACCT
CATCCGGACTCGCACCGGCTTTCGCGCTGCGTTGTGGACAGAAGAGCGTT
CAGTGGAAAAAACTGCAGAAAATGCACGCGAAGAGAAACGGAAACTGTTT
CACGAGGAACCGTGA

Coding sequence (CDS) from alignment at CM002465.1:577923..579037+

>rna5270 ID=rna5270|Name=rna5270|organism=Nannochloropsis gaditana|type=CDS|length=3750bp|location=Sequence derived from alignment at CM002465.1:577923..579037+ (Nannochloropsis gaditana)
ATGCCCGTGCTAACCGTATTCACCCTCGATTACCACcacttctcttcttc
tctcatACTACCTTCCGGTACTCGCGTCCTCTCTGCACTGCCCTGGCAGC
CCCTGGTGCTCTCAAGTCAACGCATCAACGGTGCTCAACACTCTACAAGC
TTTAGATTTATTCGACCAATTTTGAGCGTCGCGCAGCAGCACTGGAAGAT
TTGCAGCGCGGTATTACAAAAGCAAAAGCAAGGTCACGAGTTTGGCTCCC
GACTTGCTCCTCTATATCATTACTTGACGATATCACGTCACAACAGCCAT
TACGTGACCATGCCTTTATACCAACAACTCATCATCGCCCGCGACATTGC
TAAGGCACCGGAGCTTACAAGCCTTTTAAAGCAGTGCGCCAAGACAGTTT
TAAGCAATGGGGGCGCCATGCGCGGGTTCGAGAATCACGGCCTGCGAGCT
CTCAGCCATCGACTTCGGAATCGCCGAgcaatggaggaagagcagaaaTA
TCATTGGCGGGCACGCTATATATCCTCCTACTTCGACGTCAGCCCCGATA
CGGTAAAGGAAGTAGAGCGAGTATTACGTCTGGACGAGAATGTCCTACGA
TTCTTCACCTTGAGGCCAAAGACCCAGGCAGACCTCATCCGGACTCGCAC
CGGCTTTCGCGCTGCGTTGTGGACAGAAGAGCGTTCAGTGGAAAAAACTG
CAGAAAATGCACGCGAAGAGAAACGGAAACTGTTTCACGAGGAACCGTGA
ATGCCCGTGCTAACCGTATTCACCCTCGATTACCACcacttctcttcttc
tctcatACTACCTTCCGGTACTCGCGTCCTCTCTGCACTGCCCTGGCAGC
CCCTGGTGCTCTCAAGTCAACGCATCAACGGTGCTCAACACTCTACAAGC
TTTAGATTTATTCGACCAATTTTGAGCGTCGCGCAGCAGCACTGGAAGAT
TTGCAGCGCGGTATTACAAAAGCAAAAGCAAGGTCACGAGTTTGGCTCCC
GACTTGCTCCTCTATATCATTACTTGACGATATCACGTCACAACAGCCAT
TACGTGACCATGCCTTTATACCAACAACTCATCATCGCCCGCGACATTGC
TAAGGCACCGGAGCTTACAAGCCTTTTAAAGCAGTGCGCCAAGACAGTTT
TAAGCAATGGGGGCGCCATGCGCGGGTTCGAGAATCACGGCCTGCGAGCT
CTCAGCCATCGACTTCGGAATCGCCGAgcaatggaggaagagcagaaaTA
TCATTGGCGGGCACGCTATATATCCTCCTACTTCGACGTCAGCCCCGATA
CGGTAAAGGAAGTAGAGCGAGTATTACGTCTGGACGAGAATGTCCTACGA
TTCTTCACCTTGAGGCCAAAGACCCAGGCAGACCTCATCCGGACTCGCAC
CGGCTTTCGCGCTGCGTTGTGGACAGAAGAGCGTTCAGTGGAAAAAACTG
CAGAAAATGCACGCGAAGAGAAACGGAAACTGTTTCACGAGGAACCGTGA
ATGCCCGTGCTAACCGTATTCACCCTCGATTACCACcacttctcttcttc
tctcatACTACCTTCCGGTACTCGCGTCCTCTCTGCACTGCCCTGGCAGC
CCCTGGTGCTCTCAAGTCAACGCATCAACGGTGCTCAACACTCTACAAGC
TTTAGATTTATTCGACCAATTTTGAGCGTCGCGCAGCAGCACTGGAAGAT
TTGCAGCGCGGTATTACAAAAGCAAAAGCAAGGTCACGAGTTTGGCTCCC
GACTTGCTCCTCTATATCATTACTTGACGATATCACGTCACAACAGCCAT
TACGTGACCATGCCTTTATACCAACAACTCATCATCGCCCGCGACATTGC
TAAGGCACCGGAGCTTACAAGCCTTTTAAAGCAGTGCGCCAAGACAGTTT
TAAGCAATGGGGGCGCCATGCGCGGGTTCGAGAATCACGGCCTGCGAGCT
CTCAGCCATCGACTTCGGAATCGCCGAgcaatggaggaagagcagaaaTA
TCATTGGCGGGCACGCTATATATCCTCCTACTTCGACGTCAGCCCCGATA
CGGTAAAGGAAGTAGAGCGAGTATTACGTCTGGACGAGAATGTCCTACGA
TTCTTCACCTTGAGGCCAAAGACCCAGGCAGACCTCATCCGGACTCGCAC
CGGCTTTCGCGCTGCGTTGTGGACAGAAGAGCGTTCAGTGGAAAAAACTG
CAGAAAATGCACGCGAAGAGAAACGGAAACTGTTTCACGAGGAACCGTGA
ATGCCCGTGCTAACCGTATTCACCCTCGATTACCACcacttctcttcttc
tctcatACTACCTTCCGGTACTCGCGTCCTCTCTGCACTGCCCTGGCAGC
CCCTGGTGCTCTCAAGTCAACGCATCAACGGTGCTCAACACTCTACAAGC
TTTAGATTTATTCGACCAATTTTGAGCGTCGCGCAGCAGCACTGGAAGAT
TTGCAGCGCGGTATTACAAAAGCAAAAGCAAGGTCACGAGTTTGGCTCCC
GACTTGCTCCTCTATATCATTACTTGACGATATCACGTCACAACAGCCAT
TACGTGACCATGCCTTTATACCAACAACTCATCATCGCCCGCGACATTGC
TAAGGCACCGGAGCTTACAAGCCTTTTAAAGCAGTGCGCCAAGACAGTTT
TAAGCAATGGGGGCGCCATGCGCGGGTTCGAGAATCACGGCCTGCGAGCT
CTCAGCCATCGACTTCGGAATCGCCGAgcaatggaggaagagcagaaaTA
TCATTGGCGGGCACGCTATATATCCTCCTACTTCGACGTCAGCCCCGATA
CGGTAAAGGAAGTAGAGCGAGTATTACGTCTGGACGAGAATGTCCTACGA
TTCTTCACCTTGAGGCCAAAGACCCAGGCAGACCTCATCCGGACTCGCAC
CGGCTTTCGCGCTGCGTTGTGGACAGAAGAGCGTTCAGTGGAAAAAACTG
CAGAAAATGCACGCGAAGAGAAACGGAAACTGTTTCACGAGGAACCGTGA
ATGCCCGTGCTAACCGTATTCACCCTCGATTACCACcacttctcttcttc
tctcatACTACCTTCCGGTACTCGCGTCCTCTCTGCACTGCCCTGGCAGC
CCCTGGTGCTCTCAAGTCAACGCATCAACGGTGCTCAACACTCTACAAGC
TTTAGATTTATTCGACCAATTTTGAGCGTCGCGCAGCAGCACTGGAAGAT
TTGCAGCGCGGTATTACAAAAGCAAAAGCAAGGTCACGAGTTTGGCTCCC
GACTTGCTCCTCTATATCATTACTTGACGATATCACGTCACAACAGCCAT
TACGTGACCATGCCTTTATACCAACAACTCATCATCGCCCGCGACATTGC
TAAGGCACCGGAGCTTACAAGCCTTTTAAAGCAGTGCGCCAAGACAGTTT
TAAGCAATGGGGGCGCCATGCGCGGGTTCGAGAATCACGGCCTGCGAGCT
CTCAGCCATCGACTTCGGAATCGCCGAgcaatggaggaagagcagaaaTA
TCATTGGCGGGCACGCTATATATCCTCCTACTTCGACGTCAGCCCCGATA
CGGTAAAGGAAGTAGAGCGAGTATTACGTCTGGACGAGAATGTCCTACGA
TTCTTCACCTTGAGGCCAAAGACCCAGGCAGACCTCATCCGGACTCGCAC
CGGCTTTCGCGCTGCGTTGTGGACAGAAGAGCGTTCAGTGGAAAAAACTG
CAGAAAATGCACGCGAAGAGAAACGGAAACTGTTTCACGAGGAACCGTGA

Synonyms

Publications