EWM25397.1, cds5257 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|585107158|gb|EWM25397.1| (30s ribosomal protein s6 [Nannochloropsis gaditana]) HSP 1 Score: 516.924 bits (1330), Expect = 0.000e+0 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query: 1 MPVLTVFTLDYHHFSSSLILPSGTRVLSALPWQPLVLSSQRINGAQHSTSFRFIRPILSVAQQHWKICSAVLQKQKQGHEFGSRLAPLYHYLTISRHNSHYVTMPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEEP 249
MPVLTVFTLDYHHFSSSLILPSGTRVLSALPWQPLVLSSQRINGAQHSTSFRFIRPILSVAQQHWKICSAVLQKQKQGHEFGSRLAPLYHYLTISRHNSHYVTMPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEEP
Sbjct: 1 MPVLTVFTLDYHHFSSSLILPSGTRVLSALPWQPLVLSSQRINGAQHSTSFRFIRPILSVAQQHWKICSAVLQKQKQGHEFGSRLAPLYHYLTISRHNSHYVTMPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEEP 249
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1210527048|dbj|GAX14178.1| (hypothetical protein FisN_20Hh201 [Fistulifera solaris]) HSP 1 Score: 88.1965 bits (217), Expect = 2.664e-18 Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 0
Query: 104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTG----FRAALWTEERSVEKTAENAREEK 241
M Y+ ++ A++ A LT+L+K + ++ GG +R NHG+R L HR + E +Y+ + R+ S Y+D +PDT+ +V+ +L++DE VLR LR ++ D I R + L EE++ +K + E+
Sbjct: 1 MVFYECVVTAKNTAHFHTLTNLVKLVSHEIVEGGGIVRAVHNHGIRTLPHRFKATYPDREGNRYYSKGRFFSIYYDANPDTMSQVDTILKMDEEVLRSTHLRARSTLDFINLREDRNPYIQQVLREEEKAADKESNKNTEQN 142
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|397642294|gb|EJK75146.1| (hypothetical protein THAOC_03141, partial [Thalassiosira oceanica]) HSP 1 Score: 87.4261 bits (215), Expect = 9.957e-18 Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 0
Query: 104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQ----ADLIRTRTGFRAALWTE 226
M Y+ L+ A++ LTSL+K+ + ++ NGG +R +NHG+R L HR +++ A E +Y+ + R+IS ++D +P T K+VE +L L+E +LR LR + DL+ +R + + +E
Sbjct: 39 MVFYECLMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADREGNRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPYIQDILSE 165
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1210512039|dbj|GAX28894.1| (hypothetical protein FisN_20Lh201 [Fistulifera solaris]) HSP 1 Score: 85.8853 bits (211), Expect = 1.731e-17 Identity = 39/113 (34.51%), Postives = 66/113 (58.41%), Query Frame = 0
Query: 104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTR 216
M Y+ ++ A++ A LT+L+K + ++ GG +R NHG+R L HR + E +Y+ + R+ S Y+D +PDT+ +V+ +L++DE VLR LR ++ D I R
Sbjct: 1 MVFYECVVTAKNTAHFHTLTNLVKLVSHEIVEGGGIVRAVHNHGIRTLPHRFKATYPDREGNRYYSKGRFFSIYYDANPDTMSQVDTILKMDEEVLRSTHLRARSTLDFINLR 113
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1072234588|gb|OEU19317.1| (hypothetical protein FRACYDRAFT_235364 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 78.9518 bits (193), Expect = 1.455e-14 Identity = 39/111 (35.14%), Postives = 67/111 (60.36%), Query Frame = 0
Query: 104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRR-AMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLI 213
M Y+ ++ + LT+L+KQ + V+ NGG +R +NHGLR HR + + +Q+Y+ + R+IS Y+D +P T+K+VE VL +++ VLR L+ +++ D I
Sbjct: 1 MVFYECVLSTKHTTHFKALTALMKQVSLKVVENGGIVRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISIYYDSNPTTLKQVETVLTMNDQVLRVTHLKSRSKLDWI 111
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|299116362|emb|CBN74627.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.8702 bits (185), Expect = 1.260e-13 Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 0
Query: 104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAM-EEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRT---RTGFRAALWTEERSVEKTAENAR 238
M YQQ++ R +LT++ ++ A +L GG +R NHG+R L +R ++ + E++ ++ R+ S+Y+D SP K++E L ++ V+R T RP T+ D I + R+ W +E+ N R
Sbjct: 1 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRR 139
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|219125652|ref|XP_002183089.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405364|gb|EEC45307.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 75.0998 bits (183), Expect = 1.757e-13 Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 0
Query: 133 VLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLI 213
V+ GG +RG NHG+R L HR + R A + +Y+ + R+IS Y+D +P T+++VE+ L +DENVLR L+ ++ D +
Sbjct: 16 VVKGGGIVRGIHNHGIRDLPHRFQARYADSQGNRYYQKGRFISIYYDSNPTTMRQVEQTLSMDENVLRNTHLKARSVLDYV 96
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|749767650|gb|KII92082.1| (hypothetical protein PLICRDRAFT_154334 [Plicaturopsis crispa FD-325 SS-3]) HSP 1 Score: 73.9442 bits (180), Expect = 3.481e-13 Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 0
Query: 104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRF 201
MP YQ L IAR + + + L+ A V++ GG +RGFE G R+L R ++ +YH+R Y + +FD SP +KE+E++LR D V+R+
Sbjct: 1 MPFYQMLCIARHMPEYRYIKDLVHTSALAVMNAGGVVRGFEYWGTRSLPQR------THKQNEYHYRGDYWTMHFDTSPRVLKELEKILRQDNRVIRW 92
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1183353869|gb|ORX81710.1| (30S ribosomal protein S6 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 72.0182 bits (175), Expect = 1.228e-12 Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 0
Query: 104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLR 200
MP Y+ + I+R P L LL++ A V+ GG +RGFEN G +AL +R M+ Q YH RY +FD +P+T+ ++ LR+D V+R
Sbjct: 1 MPFYELVCISRARLSEPNLADLLRKTATQVMERGGVVRGFENMGEQALPYR------MKRHQTYHSEGRYWLMHFDANPNTLTTMDAKLRVDPRVIR 91
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1055573583|ref|WP_067215800.1| (30S ribosomal protein S6 [Stappia indica]) HSP 1 Score: 70.0922 bits (170), Expect = 2.357e-11 Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 0
Query: 104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLR 205
MPLY+ + +AR A ++ +++Q + SNGG + E+ GLR L++R+ R +A Y D SP V E+ER +R++E++LRF TLR
Sbjct: 1 MPLYEHVFLARQDVSAQQVEQMVEQYKALISSNGGNVGKVESWGLRTLAYRINKNR----------KAHYTLMNLDASPAAVAEMERQMRINEDILRFMTLR 92 The following BLAST results are available for this feature:
BLAST of EWM25397.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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