EWM25397.1, cds5257 (CDS) Nannochloropsis gaditana

Overview
NameEWM25397.1
Unique Namecds5257
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:577923..578230 +
Alignment locationCM002465.1:578281..578299 +
Alignment locationCM002465.1:578416..578497 +
Alignment locationCM002465.1:578577..578637 +
Alignment locationCM002465.1:578758..579037 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25397.1
Product30s ribosomal protein s6
Orig transcript idgnl|cribi|Naga_100005g59.6691.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:577923..578230 +
CM002465.1supercontigCM002465.1:578281..578299 +
CM002465.1supercontigCM002465.1:578416..578497 +
CM002465.1supercontigCM002465.1:578577..578637 +
CM002465.1supercontigCM002465.1:578758..579037 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000529Ribosomal_S6
IPR014717Transl_elong_EF1B/ribosomal_S6
Homology
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|585107158|gb|EWM25397.1| (30s ribosomal protein s6 [Nannochloropsis gaditana])

HSP 1 Score: 516.924 bits (1330), Expect = 0.000e+0
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MPVLTVFTLDYHHFSSSLILPSGTRVLSALPWQPLVLSSQRINGAQHSTSFRFIRPILSVAQQHWKICSAVLQKQKQGHEFGSRLAPLYHYLTISRHNSHYVTMPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEEP 249
            MPVLTVFTLDYHHFSSSLILPSGTRVLSALPWQPLVLSSQRINGAQHSTSFRFIRPILSVAQQHWKICSAVLQKQKQGHEFGSRLAPLYHYLTISRHNSHYVTMPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEEP
Sbjct:    1 MPVLTVFTLDYHHFSSSLILPSGTRVLSALPWQPLVLSSQRINGAQHSTSFRFIRPILSVAQQHWKICSAVLQKQKQGHEFGSRLAPLYHYLTISRHNSHYVTMPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEEP 249          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1210527048|dbj|GAX14178.1| (hypothetical protein FisN_20Hh201 [Fistulifera solaris])

HSP 1 Score: 88.1965 bits (217), Expect = 2.664e-18
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 0
Query:  104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTG----FRAALWTEERSVEKTAENAREEK 241
            M  Y+ ++ A++ A    LT+L+K  +  ++  GG +R   NHG+R L HR +      E  +Y+ + R+ S Y+D +PDT+ +V+ +L++DE VLR   LR ++  D I  R       +  L  EE++ +K +    E+ 
Sbjct:    1 MVFYECVVTAKNTAHFHTLTNLVKLVSHEIVEGGGIVRAVHNHGIRTLPHRFKATYPDREGNRYYSKGRFFSIYYDANPDTMSQVDTILKMDEEVLRSTHLRARSTLDFINLREDRNPYIQQVLREEEKAADKESNKNTEQN 142          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|397642294|gb|EJK75146.1| (hypothetical protein THAOC_03141, partial [Thalassiosira oceanica])

HSP 1 Score: 87.4261 bits (215), Expect = 9.957e-18
Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 0
Query:  104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQ----ADLIRTRTGFRAALWTE 226
            M  Y+ L+ A++      LTSL+K+ +  ++ NGG +R  +NHG+R L HR +++ A  E  +Y+ + R+IS ++D +P T K+VE +L L+E +LR   LR   +     DL+ +R  +   + +E
Sbjct:   39 MVFYECLMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADREGNRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPYIQDILSE 165          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1210512039|dbj|GAX28894.1| (hypothetical protein FisN_20Lh201 [Fistulifera solaris])

HSP 1 Score: 85.8853 bits (211), Expect = 1.731e-17
Identity = 39/113 (34.51%), Postives = 66/113 (58.41%), Query Frame = 0
Query:  104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTR 216
            M  Y+ ++ A++ A    LT+L+K  +  ++  GG +R   NHG+R L HR +      E  +Y+ + R+ S Y+D +PDT+ +V+ +L++DE VLR   LR ++  D I  R
Sbjct:    1 MVFYECVVTAKNTAHFHTLTNLVKLVSHEIVEGGGIVRAVHNHGIRTLPHRFKATYPDREGNRYYSKGRFFSIYYDANPDTMSQVDTILKMDEEVLRSTHLRARSTLDFINLR 113          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1072234588|gb|OEU19317.1| (hypothetical protein FRACYDRAFT_235364 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 78.9518 bits (193), Expect = 1.455e-14
Identity = 39/111 (35.14%), Postives = 67/111 (60.36%), Query Frame = 0
Query:  104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRR-AMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLI 213
            M  Y+ ++  +       LT+L+KQ +  V+ NGG +R  +NHGLR   HR + +      +Q+Y+ + R+IS Y+D +P T+K+VE VL +++ VLR   L+ +++ D I
Sbjct:    1 MVFYECVLSTKHTTHFKALTALMKQVSLKVVENGGIVRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISIYYDSNPTTLKQVETVLTMNDQVLRVTHLKSRSKLDWI 111          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|299116362|emb|CBN74627.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.8702 bits (185), Expect = 1.260e-13
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 0
Query:  104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAM-EEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRT---RTGFRAALWTEERSVEKTAENAR 238
            M  YQQ++  R      +LT++ ++ A  +L  GG +R   NHG+R L +R  ++  + E++ ++    R+ S+Y+D SP   K++E  L  ++ V+R  T RP T+ D I +   R+      W     +E+   N R
Sbjct:    1 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRR 139          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|219125652|ref|XP_002183089.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405364|gb|EEC45307.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.0998 bits (183), Expect = 1.757e-13
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 0
Query:  133 VLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLI 213
            V+  GG +RG  NHG+R L HR + R A  +  +Y+ + R+IS Y+D +P T+++VE+ L +DENVLR   L+ ++  D +
Sbjct:   16 VVKGGGIVRGIHNHGIRDLPHRFQARYADSQGNRYYQKGRFISIYYDSNPTTMRQVEQTLSMDENVLRNTHLKARSVLDYV 96          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|749767650|gb|KII92082.1| (hypothetical protein PLICRDRAFT_154334 [Plicaturopsis crispa FD-325 SS-3])

HSP 1 Score: 73.9442 bits (180), Expect = 3.481e-13
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 0
Query:  104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRF 201
            MP YQ L IAR + +   +  L+   A  V++ GG +RGFE  G R+L  R        ++ +YH+R  Y + +FD SP  +KE+E++LR D  V+R+
Sbjct:    1 MPFYQMLCIARHMPEYRYIKDLVHTSALAVMNAGGVVRGFEYWGTRSLPQR------THKQNEYHYRGDYWTMHFDTSPRVLKELEKILRQDNRVIRW 92          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1183353869|gb|ORX81710.1| (30S ribosomal protein S6 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 72.0182 bits (175), Expect = 1.228e-12
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 0
Query:  104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLR 200
            MP Y+ + I+R     P L  LL++ A  V+  GG +RGFEN G +AL +R      M+  Q YH   RY   +FD +P+T+  ++  LR+D  V+R
Sbjct:    1 MPFYELVCISRARLSEPNLADLLRKTATQVMERGGVVRGFENMGEQALPYR------MKRHQTYHSEGRYWLMHFDANPNTLTTMDAKLRVDPRVIR 91          
BLAST of EWM25397.1 vs. NCBI_GenBank
Match: gi|1055573583|ref|WP_067215800.1| (30S ribosomal protein S6 [Stappia indica])

HSP 1 Score: 70.0922 bits (170), Expect = 2.357e-11
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 0
Query:  104 MPLYQQLIIARDIAKAPELTSLLKQCAKTVLSNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLR 205
            MPLY+ + +AR    A ++  +++Q    + SNGG +   E+ GLR L++R+   R          +A Y     D SP  V E+ER +R++E++LRF TLR
Sbjct:    1 MPLYEHVFLARQDVSAQQVEQMVEQYKALISSNGGNVGKVESWGLRTLAYRINKNR----------KAHYTLMNLDASPAAVAEMERQMRINEDILRFMTLR 92          
The following BLAST results are available for this feature:
BLAST of EWM25397.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107158|gb|EWM25397.1|0.000e+0100.0030s ribosomal protein s6 [Nannochloropsis gaditana... [more]
gi|1210527048|dbj|GAX14178.1|2.664e-1830.99hypothetical protein FisN_20Hh201 [Fistulifera sol... [more]
gi|397642294|gb|EJK75146.1|9.957e-1833.86hypothetical protein THAOC_03141, partial [Thalass... [more]
gi|1210512039|dbj|GAX28894.1|1.731e-1734.51hypothetical protein FisN_20Lh201 [Fistulifera sol... [more]
gi|1072234588|gb|OEU19317.1|1.455e-1435.14hypothetical protein FRACYDRAFT_235364 [Fragilario... [more]
gi|299116362|emb|CBN74627.1|1.260e-1329.50conserved unknown protein [Ectocarpus siliculosus][more]
gi|219125652|ref|XP_002183089.1|1.757e-1340.74predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|749767650|gb|KII92082.1|3.481e-1337.76hypothetical protein PLICRDRAFT_154334 [Plicaturop... [more]
gi|1183353869|gb|ORX81710.1|1.228e-1238.1430S ribosomal protein S6 [Basidiobolus meristospor... [more]
gi|1055573583|ref|WP_067215800.1|2.357e-1135.2930S ribosomal protein S6 [Stappia indica][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5270rna5270Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications