rna5261, rna5261 (mRNA) Nannochloropsis gaditana

Overview
Namerna5261
Unique Namerna5261
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length711
Alignment locationCM002465.1:557912..558841 +

Link to JBrowse

Properties
Property NameValue
ProductUncharacterized protein family UPF0041
Orig transcript idgnl|cribi|Naga_100005g49.6669.mrna
Orig protein idgnl|cribi|Naga_100005g49.6669
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:557912..558841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g49gene5081Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5261rna5261-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25375.1cds5248Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5261 ID=rna5261|Name=rna5261|organism=Nannochloropsis gaditana|type=mRNA|length=711bp
ATGTCTCGAGTGAGCCAGAGCCCAGTGAGTTTGAAGACCGAGCGTGTCTC
TCCAAGCATCGACCCGCATGCCCCTCAATCCACCCGATCATCGAGTTCGA
TTTTTCACTTTAACCTCCTCAGATGGCAAGGTACCACGAAGAGAAGACAA
ATCTTCATTGAGGAGTTAGGTACACTGTTCACTGCGTTGGTCCTTTTTGT
TATCAGAAGTCTCACTCTATCGGGCCAACATGAAGCACCCGTCGGATCTG
CCATCTCTGATCCTTGGCCAAGAAAAGCCTTGAATTTTAGGCATTACAAG
AACAGCAAGACACATCATAAGAACTGGCCTTGGAAACCCCATCGAGCAAA
GCTTATAATAGGTACCCATGAGCCAAGCCAACTGGGCAAGGAAGAAATAC
AATCCACAAAGACCGCATATTGTCACAATCAAAGTAAAATAGCCGAAGGC
ACCTGTATATTGGATAGAAAGAAGTGTTCGAGGTTATACGATACCGTTGA
AATCATCTCGTCCTTACAGACAGTACACACCTGCTGCATTGTTCAAACCC
GACATGAAGTAGACCACTGTACAGTAAGTAACACTTGCCACAACGCATTG
GGCTCCGCGTTCTCGATAAAAGAGCAAGCGATCATCAAAGAAGCTGTTAT
ATGGTGTGTAGTTGGAAGTATATCTTCTCGTGAGTTCTTCCCTCATAAAT
TCATACTCTAA
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protein sequence of rna5261

>rna5261-protein ID=rna5261-protein|Name=rna5261|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MTRPSRRSASLNRLPFTKASVGYINCNFSMALGVVTALKARLLAVGFIKN
NPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLA
VTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTATPNSMSV
ASSS
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mRNA from alignment at CM002465.1:557912..558841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5261 ID=rna5261|Name=rna5261|organism=Nannochloropsis gaditana|type=mRNA|length=930bp|location=Sequence derived from alignment at CM002465.1:557912..558841+ (Nannochloropsis gaditana)
ATGACACGTCCCTCGCGGCGCAGTGCTTCTTTGAACAGGCTCCCGTTTAC
GAAGGCGAGCGTTGGCTATATAAATTGCAATTTTTCCATGGCTTTAGGCG
TAGTAACAGCGCTCAAAGCCCGATTGCTGGCGGTAGGGTTTATTAAAAAC
AATCCGCGGGTCAAGGCTGTGCTCGATCACCCTGCTGGACCGTTCACTAG
TGAGTGTTGTCAGCGTGTCTTTCGTTTTCTCCTTACCCTGACTTTCGTTA
AGATGTACGATCCATCCAAGTTGCAGGGAATGTAGAGGGTACAAGCGTTA
TGAGAGCTTACAAATTGCGTGTGTGCTCCGTAGCTATTGTGGTCATCTAT
AAAAACCCTCTAGCAGTATTTCCTTGAAAAACCATGGTGGCCAGGTAGTG
CAAGAAATGATACTTTCAAAGCCAGGGCGCACATACCATTATTCTAAGTA
GCTGAAACACGTCGCAGATTAAATGGGAAGGGCTTCTCTCCTTCTGAATA
GTCTCACCACCCTTCACAACATACGCACTGTAGTCCACTTTTGGGCACCT
TCTTTCAAGTGGGGAATCTCATTGGCAAATATCGCTGACTTTAATCGACC
AGCAGAGCTGATTTCTGTGCCTCAACAACTCGGTAAGGTTTGCGAGTTTC
CACCTCAATTTCATATGttacttcctcccccctggacTTGTGAAACACGA
TTGTCTTTCAAATAACATATCTCTCTTCTGGCTCGAACCACGTATGCGTA
CTTGCTCTGCTAGCGGTGACAGCCACGGGCATCATCTGGTCGCGCTACAG
CTTCGTTATCACACCAGTGAATTACAACCTTTTCAGCGTCAACGCATTCA
TGGCTGTCACGGGAAGTTACCAGCTGTGGCGAAAATTTACTGCTACACCT
AACTCTATGTCTGTTGCTTCGTCATCATGA
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Coding sequence (CDS) from alignment at CM002465.1:557912..558841+

>rna5261 ID=rna5261|Name=rna5261|organism=Nannochloropsis gaditana|type=CDS|length=1395bp|location=Sequence derived from alignment at CM002465.1:557912..558841+ (Nannochloropsis gaditana)
ATGACACGTCCCTCGCGGCGCAGTGCTTCTTTGAACAGGCTCCCGTTTAC
GAAGGCGAGCGTTGGCTATATAAATTGCAATTTTTCCATGGCTTTAGGCG
TAGTAACAGCGCTCAAAGCCCGATTGCTGGCGGTAGGGTTTATTAAAAAC
AATCCGCGGGTCAAGGCTGTGCTCGATCACCCTGCTGGACCGTTCACTAT
CCACTTTTGGGCACCTTCTTTCAAGTGGGGAATCTCATTGGCAAATATCG
CTGACTTTAATCGACCAGCAGAGCTGATTTCTGTGCCTCAACAACTCGCG
GTGACAGCCACGGGCATCATCTGGTCGCGCTACAGCTTCGTTATCACACC
AGTGAATTACAACCTTTTCAGCGTCAACGCATTCATGGCTGTCACGGGAA
GTTACCAGCTGTGGCGAAAATTTACTGCTACACCTAACTCTATGTCTGTT
GCTTCGTCATCATGAATGACACGTCCCTCGCGGCGCAGTGCTTCTTTGAA
CAGGCTCCCGTTTACGAAGGCGAGCGTTGGCTATATAAATTGCAATTTTT
CCATGGCTTTAGGCGTAGTAACAGCGCTCAAAGCCCGATTGCTGGCGGTA
GGGTTTATTAAAAACAATCCGCGGGTCAAGGCTGTGCTCGATCACCCTGC
TGGACCGTTCACTATCCACTTTTGGGCACCTTCTTTCAAGTGGGGAATCT
CATTGGCAAATATCGCTGACTTTAATCGACCAGCAGAGCTGATTTCTGTG
CCTCAACAACTCGCGGTGACAGCCACGGGCATCATCTGGTCGCGCTACAG
CTTCGTTATCACACCAGTGAATTACAACCTTTTCAGCGTCAACGCATTCA
TGGCTGTCACGGGAAGTTACCAGCTGTGGCGAAAATTTACTGCTACACCT
AACTCTATGTCTGTTGCTTCGTCATCATGAATGACACGTCCCTCGCGGCG
CAGTGCTTCTTTGAACAGGCTCCCGTTTACGAAGGCGAGCGTTGGCTATA
TAAATTGCAATTTTTCCATGGCTTTAGGCGTAGTAACAGCGCTCAAAGCC
CGATTGCTGGCGGTAGGGTTTATTAAAAACAATCCGCGGGTCAAGGCTGT
GCTCGATCACCCTGCTGGACCGTTCACTATCCACTTTTGGGCACCTTCTT
TCAAGTGGGGAATCTCATTGGCAAATATCGCTGACTTTAATCGACCAGCA
GAGCTGATTTCTGTGCCTCAACAACTCGCGGTGACAGCCACGGGCATCAT
CTGGTCGCGCTACAGCTTCGTTATCACACCAGTGAATTACAACCTTTTCA
GCGTCAACGCATTCATGGCTGTCACGGGAAGTTACCAGCTGTGGCGAAAA
TTTACTGCTACACCTAACTCTATGTCTGTTGCTTCGTCATCATGA
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Synonyms
Publications