EWM25375.1, cds5248 (CDS) Nannochloropsis gaditana

Overview
NameEWM25375.1
Unique Namecds5248
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:557912..558110 +
Alignment locationCM002465.1:558445..558543 +
Alignment locationCM002465.1:558675..558841 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25375.1
ProductUncharacterized protein family UPF0041
Orig transcript idgnl|cribi|Naga_100005g49.6669.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:557912..558110 +
CM002465.1supercontigCM002465.1:558445..558543 +
CM002465.1supercontigCM002465.1:558675..558841 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006850mitochondrial pyruvate transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0005634nucleus
GO:0005743mitochondrial inner membrane
Vocabulary: INTERPRO
TermDefinition
IPR005336MPC
Homology
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|585107136|gb|EWM25375.1| (Uncharacterized protein family UPF0041 [Nannochloropsis gaditana])

HSP 1 Score: 311.997 bits (798), Expect = 1.238e-107
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MTRPSRRSASLNRLPFTKASVGYINCNFSMALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTATPNSMSVASSS 154
            MTRPSRRSASLNRLPFTKASVGYINCNFSMALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTATPNSMSVASSS
Sbjct:    1 MTRPSRRSASLNRLPFTKASVGYINCNFSMALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTATPNSMSVASSS 154          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|325183343|emb|CCA17801.1| (CSH putative [Albugo laibachii Nc14])

HSP 1 Score: 166.007 bits (419), Expect = 2.840e-50
Identity = 79/120 (65.83%), Postives = 94/120 (78.33%), Query Frame = 0
Query:   30 MALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTATPNSMS 149
            M  G+V  L+A++LA   + NNP V++ L HPAGPFTIHFWAP+FKWGISLANIAD  R  E IS+PQQ+A+TATG+IWSRYS VITP N+NLFSVN FMA TG  QL+RK T T N+ S
Sbjct:    1 MFFGIVPRLQAKVLATDIVANNPSVRSFLQHPAGPFTIHFWAPAFKWGISLANIADMRRSPETISLPQQIAITATGVIWSRYSLVITPKNWNLFSVNVFMAGTGLSQLYRKATYTKNTES 120          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|635369437|emb|CCI42368.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 156.762 bits (395), Expect = 1.372e-46
Identity = 76/115 (66.09%), Postives = 88/115 (76.52%), Query Frame = 0
Query:   30 MALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTAT 144
            M  G V  L+A++LA   +  NP  ++ L HPAGPFTIHFWAP+FKWGISLANIAD  R  E IS+PQQ+A+TATGIIWSRYS VITP N+NLFSVN FMA TG  QL+RK T T
Sbjct:    1 MFSGFVPRLQAKVLAADIVAKNPSFRSFLQHPAGPFTIHFWAPAFKWGISLANIADMRRSPETISLPQQIAITATGIIWSRYSLVITPKNWNLFSVNVFMAATGLTQLFRKATYT 115          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|675181149|ref|XP_008899459.1| (hypothetical protein PPTG_07053 [Phytophthora parasitica INRA-310] >gi|566032180|gb|ETI55091.1| hypothetical protein F443_02218 [Phytophthora parasitica P1569] >gi|567969842|gb|ETK94909.1| hypothetical protein L915_02128 [Phytophthora parasitica] >gi|567998225|gb|ETL48302.1| hypothetical protein L916_02092 [Phytophthora parasitica] >gi|568027442|gb|ETM01397.1| hypothetical protein L917_02028 [Phytophthora parasitica] >gi|568057944|gb|ETM54592.1| hypothetical protein L914_02110 [Phytophthora parasitica] >gi|568100082|gb|ETN14781.1| hypothetical protein PPTG_07053 [Phytophthora parasitica INRA-310] >gi|570335880|gb|ETO83828.1| hypothetical protein F444_02224 [Phytophthora parasitica P1976] >gi|570959893|gb|ETP24872.1| hypothetical protein F441_02191 [Phytophthora parasitica CJ01A1] >gi|570996239|gb|ETP52889.1| hypothetical protein F442_02176 [Phytophthora parasitica P10297] >gi|970637073|gb|KUF81266.1| hypothetical protein AM587_10014612 [Phytophthora nicotianae] >gi|970658375|gb|KUF96144.1| Kinesin protein [Phytophthora nicotianae])

HSP 1 Score: 154.451 bits (389), Expect = 1.129e-45
Identity = 72/125 (57.60%), Postives = 91/125 (72.80%), Query Frame = 0
Query:   30 MALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTATPNSMSVASSS 154
            M   +V  ++ ++L    + N+P++ A+L HPAGPFT+HFWAP+FKWGISLAN+AD  R  E ISV QQ AVTATG+IWSRYS VITP N+NLF+VN FMA TG  Q +RKFT  P  +  A+ S
Sbjct:    1 MLPSIVPRIQQKVLEQQIVANSPKLTAMLSHPAGPFTVHFWAPTFKWGISLANVADMKRSPETISVAQQTAVTATGLIWSRYSLVITPKNWNLFAVNVFMAGTGLVQFYRKFTYDPKKVEEAAKS 125          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|302846262|ref|XP_002954668.1| (hypothetical protein VOLCADRAFT_109934 [Volvox carteri f. nagariensis] >gi|300260087|gb|EFJ44309.1| hypothetical protein VOLCADRAFT_109934 [Volvox carteri f. nagariensis])

HSP 1 Score: 148.673 bits (374), Expect = 1.254e-43
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 0
Query:   53 RVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFT 142
            +++A  +HPAGP TIHFWAP+FKWGISLANIAD NRPAE IS+PQQ A+TATG+IWSRYS  ITPVNYNL +VNAFMA+TG+YQL+RK +
Sbjct:    6 KLQAFWNHPAGPKTIHFWAPTFKWGISLANIADINRPAEKISLPQQCAITATGVIWSRYSTQITPVNYNLLAVNAFMALTGAYQLFRKIS 95          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|833488480|ref|XP_012768525.1| (BRAIN PROTEIN 44/YHR162W(YEAST) like protein, putative [Babesia bigemina] >gi|656185941|emb|CDR96339.1| BRAIN PROTEIN 44/YHR162W(YEAST) like protein, putative [Babesia bigemina])

HSP 1 Score: 149.058 bits (375), Expect = 1.645e-43
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0
Query:   33 GVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWR 139
            GVV  L+A++LA+   +   + KAVL HPAGPFTIHF+AP+FKWGIS+AN+AD NRP + +S+PQQLAV+ TGIIWSRYS VITPVNYNL +VNA MAVTG YQ+ R
Sbjct:   12 GVVPVLQAKVLALPLPE---KAKAVLAHPAGPFTIHFYAPTFKWGISIANLADINRPTDKLSLPQQLAVSCTGIIWSRYSTVITPVNYNLLAVNAAMAVTGVYQISR 115          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|669151302|ref|XP_008611213.1| (hypothetical protein SDRG_07171 [Saprolegnia diclina VS20] >gi|530737221|gb|EQC35463.1| hypothetical protein SDRG_07171 [Saprolegnia diclina VS20])

HSP 1 Score: 148.288 bits (373), Expect = 3.175e-43
Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = 0
Query:   34 VVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRK 140
            VV  LK  +LA  FI  NP+V + L+HPAGPFTIHFWAP+FKW ISLAN+AD  +  +L+S PQQ+AVT TG+IWSRYS VITP N+NLFSVN FMA TG  QL+RK
Sbjct:    7 VVPRLKQAVLAQDFIAKNPKVVSFLEHPAGPFTIHFWAPAFKWCISLANVADMKKNPDLLSTPQQVAVTLTGVIWSRYSLVITPKNWNLFSVNLFMAGTGLTQLYRK 113          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|953493275|emb|CEG44351.1| (mitochondrial pyruvate carrier 2-like [Plasmopara halstedii])

HSP 1 Score: 156.377 bits (394), Expect = 4.993e-43
Identity = 73/133 (54.89%), Postives = 96/133 (72.18%), Query Frame = 0
Query:   24 INCNFSMAL----GVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTATPNSMSVAS 152
            I CNF ++L     +V  ++ ++L    + N+P++ ++L HPAGPFT+HFWAP+FKW IS+ANIAD  R  E ISV QQ AVTATG+IWSRYS VITP N+NLF+VN FMA TG  Q +RKFT  P  ++ A+
Sbjct:  287 IFCNFHLSLKMLPSIVPRIQQKILEHQIVTNSPKLTSILSHPAGPFTVHFWAPTFKWAISIANIADMRRSPEHISVAQQAAVTATGLIWSRYSLVITPKNWNLFAVNVFMAGTGLTQFYRKFTYNPKKVADAA 419          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|813149451|ref|XP_012200372.1| (hypothetical protein SPRG_05693 [Saprolegnia parasitica CBS 223.65] >gi|641534802|gb|KDO28732.1| hypothetical protein SPRG_05693 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 147.517 bits (371), Expect = 8.488e-43
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 0
Query:   34 VVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRK 140
            VV  LK  +LA  F+  NP+V + L+HPAGPFTIHFWAP+FKW ISLAN+AD  +  +L+S PQQ AVT TG+IWSRYS VITP N+NLFSVN FMA TG  QL+RK
Sbjct:    7 VVPRLKQAVLAQDFVAKNPKVVSFLEHPAGPFTIHFWAPAFKWCISLANVADMKKNPDLLSTPQQFAVTLTGVIWSRYSLVITPKNWNLFSVNLFMAGTGLTQLYRK 113          
BLAST of EWM25375.1 vs. NCBI_GenBank
Match: gi|301102019|ref|XP_002900097.1| (CSH [Phytophthora infestans T30-4] >gi|262102249|gb|EEY60301.1| CSH [Phytophthora infestans T30-4])

HSP 1 Score: 147.902 bits (372), Expect = 8.546e-43
Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 0
Query:   30 MALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTATPNSMSVASSS 154
            M   +V  ++ ++L    + N+P++ A++ HPAGPFT+HFWAP+ KW ISLAN+AD  R  E ISV QQ AVT TG+IWSRYS VITP N+NLF+VN FMA TG  Q +RKFT  P  +  A+ S
Sbjct:   26 MLPSIVPRIQQKVLEQQIVANSPKLTAMVSHPAGPFTVHFWAPTIKWAISLANVADMRRSPETISVAQQTAVTGTGVIWSRYSMVITPKNWNLFAVNVFMAGTGLVQFYRKFTYDPEKVEEAAKS 150          
The following BLAST results are available for this feature:
BLAST of EWM25375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107136|gb|EWM25375.1|1.238e-107100.00Uncharacterized protein family UPF0041 [Nannochlor... [more]
gi|325183343|emb|CCA17801.1|2.840e-5065.83CSH putative [Albugo laibachii Nc14][more]
gi|635369437|emb|CCI42368.1|1.372e-4666.09unnamed protein product [Albugo candida][more]
gi|675181149|ref|XP_008899459.1|1.129e-4557.60hypothetical protein PPTG_07053 [Phytophthora para... [more]
gi|302846262|ref|XP_002954668.1|1.254e-4374.44hypothetical protein VOLCADRAFT_109934 [Volvox car... [more]
gi|833488480|ref|XP_012768525.1|1.645e-4367.29BRAIN PROTEIN 44/YHR162W(YEAST) like protein, puta... [more]
gi|669151302|ref|XP_008611213.1|3.175e-4366.36hypothetical protein SDRG_07171 [Saprolegnia dicli... [more]
gi|953493275|emb|CEG44351.1|4.993e-4354.89mitochondrial pyruvate carrier 2-like [Plasmopara ... [more]
gi|813149451|ref|XP_012200372.1|8.488e-4365.42hypothetical protein SPRG_05693 [Saprolegnia paras... [more]
gi|301102019|ref|XP_002900097.1|8.546e-4354.40CSH [Phytophthora infestans T30-4] >gi|262102249|g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5261rna5261Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications