|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100005g48.6715.mrna |
| Orig protein id | gnl|cribi|Naga_100005g48.6715 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:556137..557661 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5260 ID=rna5260|Name=rna5260|organism=Nannochloropsis gaditana|type=mRNA|length=3093bp
ATGTTCTCAAAAGCAAATCAAGGTGCCGAGGTGAATAATGAGATCCTGAA
AAGATTCAGTCCGACCACAGAATTTGACCGAAAGGAGTTGTTGAAACACA
TCACCATGACGGTATTGCCAGGAGAAATCGCTTTTGTCATGGGTCCAAGC
GGAGCAGGCAAATCGACCCTTTTGGATGCACTAGCAGGACGCATTAAAGA
TGGAGTCATGAGCGGCCACATATATTTCAATGGAAGGCCTCGATCCTCGG
ACTTTTACAGTAACTCAGCTTACGTTCGCCAAGACGATGTCCATATACCT
AATCTGACTGTGGGAGAGACGCTTTTTTTTGCCGCTCAGCTTCGTTTAGG
AGGGGAATATACCATAAATGAGAGGCAATCGCGTATCAAAGCCGTCTCTG
ACCTTCTTGGACTGAATTCATGCATCCTAAGCTTGGTTGGTGATGCTGGC
ATGCGTGGCATTTCTGGAGGACAGCTCAAACGTCTGAGTATTGCAGTAGA
GATTATGAATATGCCCAGTCTCATATTCTTGGACGAGCCTACAAGTGGTC
TCGACTCAGTCATGGCTCACGATGTAATGACATTCACCAATCGATTGGCA
GACCAAAACCGCACCATCCTGGCCACGATCCATCAACCTTCTAGCGAAAC
CTATGCTCTCGCCAGCAAGGTGATCTTGGTAAGTGCTGGAAGGATAATGT
TTTGCGGACCAGCTAATGAGGCACAATCGTACTTCATATCCCTTGGTTTT
TCGGCTCAAATGTTTGGTAATCCTGCTGATTTCATCATCGCTGTTGTCAG
TGGGGCAGAGCCGTCAAGTTCATCGACTACGGGAACAAAAGATACCGATG
CCAAAAGCCTGAGTGACCTCTATGAAGCATCAAAGTATTTTCAAGTACCT
GCTACTCGATCACAAATCCATTCTGGTGCGCGAAACATTGGTTCTCAACC
GCACGCCTTTCCAACCAGTGTTACCAGTCAAACATATACACTTGTAAATC
GATTTTGGATCGCGCAAAGCCGACAGTGGGAGTTTGTTGTTGCACAACTG
GGGAAGAATGTGGTTGTGGCTTCAATATGCGGGGCAATTTTTTTCGGGCA
AGGCCGAGAGAAAAGCCTTTCAACTTTTAGCAATGTCAGTTTTAATGTGA
GCTCTCTTTGGTACTTCGCAATGCTCTACACGGTGCTAAGCTGTCTTCAA
ATCATTCCCCAGCTCTTCTTCTTTGGGGTACTCTACAACCGAGAGCGTAG
TGCCAATGTGTACTCGACATTTGCCTATTGGGCAGCAAATGCAATTGTTT
GCGTACCTTTGCTGCTCCTCTCTCACGTGATCTTCGTAGAGATCAGCTAT
TGGATGGTTGGGCTATACCCTAACGCAGCCTGCCATTTATTCGCTTTGCT
TGTGACCTTTTTGAATAATCTTATTTCATTTTATTGTGCCCAATGTATCG
CTGCCATCTCGCCAAGCGCCGAAGTCGCCTTAGCCATGTTCCCGCTTGTC
TTTCTTTTCCTGGGTAGCTTCGCTGGATTTACTATCCCTCTTGGAGAGCT
GCCACCAGGCTGGAAATGGGCCTCATACATTTCTTATCCTCGCTGGACAT
ATCAAGCACTGATCATAAATGAATTCCAGTACAGAGCAGACCGCACTGCA
GTCCTGACATTTTACAGCTTTACAGGCTTCAACAAATATCTCGCCCTACC
TATTTTGGCCGCTTTCATTGTGCTTATGAATGTCTTTGTATACATCGGCC
TCTTGCCCAAGCAATCCCGTCTCCAATTTGAAAATCAAACATCACCAGCT
GAATCCCCTAAAGATGATGCTGTGATTGTTGTAAAGAAACCTCCGGTGCT
GCTTACTTCGCCAAAAAGTCTCACGTTGGATGACTTCAAAATACGTTCTG
CGCAACGTTTTCCATCAACCACGGGCCTAAGCTTGATGTTTCGTGATTTG
CAATATTCTGTCGGCAAGTCGCCTGACCGAGCGGCGCGCATTTTAAAAGG
AGTAAGCGGGCACGTTTTCCCAGGACAAATGTGCGCTTTAATGGGTGGTA
GCGGGGCAGGAAAGTCCACTCTTCTCGATCTGTTGGCACATCGGAAGACA
GGAGGCTTCATCACTGGCGAATATTACATTGGAGGACAAGCAGAAAAACC
CTCGTCTAAATGGTGCAGTTATGTCACACAAGACAACGTCCACATTTCTC
TCTTCACAGTGAGAGAAACATTGGAGTTTGCCGCTCTTTTGCGGCTGAAG
GAGGGAATACCAGTGGAAAAGAGGAGAGAGCGCGCCGAGGACGTCATGAA
AATGCTTGGACTGGAAGATGTAGCGGACGTGCCAGTGGGGAATGCGCTTG
TAAAAGGGATTTCAGGAGGCCAAGCTAGGCGGTTATCTATCGGAGTCGAA
ATTATGCATCTTCCCGATGTTTTATTTCTCGATGAACCCACAACGGGTTT
GGATTCGCAAATTTCACATGAGGTGATGTCCTCGGTTCGGAATATAGCCA
ACCATAATCGCACTGTCGTGTGTACTATACACTCACCTTCAAAAGCTGTA
TATGAGTTATTTGATTCCCTACTTCTTCTGGCACTCGGTCGACAAACTTA
TTTTGGGTCAGCGGAAGCTGCTCCCACCTACTTTAGTCTCTTGACTTTGG
GTTGGTGCATGCCCATTGGGAAGAACCCCGCCGACTTCCTCATGGAGGCA
AATCAAGGGCTGCTAGTTGCCAGTGATGGCACACGCCGCACAATTCGAGA
GCTTAATCATCTTTTCTTGAACTCGCGTAACTGCATGGACATTGATGGAC
AGATTGAAGAAACTCTTCGTATCCGTCTTATTAATCGTCATCGATCGAAG
GAGCAACAATGGGAGAAAGCAGTCGATCTTCCTCGAAGGATAAGGACTGA
TAGCATCTTTGCTACTCTGACCAAACCCGAAACCTATCCACGATCTACTG
TGGCGCAGATGTACATTTTGACTATGAGACAGTTTCGGAAGGCATGGAAA
ATGGTCCGTATTGAACCCATTGAGGGAATGCAAATTCACGTAGGAAGTAA
TTACGTCCTTATAAATTTTAGACTACTTTTCCTCTCATTCTGA back to topprotein sequence of rna5260 >rna5260-protein ID=rna5260-protein|Name=rna5260|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MSRVSQSPVSLKTERVSPSIDPHAPQSTRSSSSIFHFNLLRWQGTTKRRQ
IFIEELGTLFTALVLFVIRSLTLSGQHEAPVGSAISDPWPRKALNFRHYK
NSKTHHKNWPWKPHRAKLIIGTHEPSQLGKEEIQSTKTAYCHNQSKIAEG
TCILDRKKCSRLYDTVEIISSLQTVHTCCIVQTRHEVDHCTVSNTCHNAL
GSAFSIKEQAIIKEAVIWCVVGSISSREFFPHKFIL back to topmRNA from alignment at CM002465.1:556137..557661- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5260 ID=rna5260|Name=rna5260|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp|location=Sequence derived from alignment at CM002465.1:556137..557661- (Nannochloropsis gaditana)
ATGTCTCGAGTGAGCCAGAGCCCAGTGAGTTTGAAGACCGAGCGTGTCTC
TCCAAGCATCGACCCGCATGCCCCTCAATCCACCCGATCATCGAGTTCGA
TTTTTCACTTTAACCTCCTCAGATGGCAAGGTACCACGAAGAGAAGACAA
ATCTTCATTGAGGAGTTAGGTACACTGTTCACTGCGTTGGTCCTTTTTGT
TATCAGAAGTCTCACTCTATCGGGCCAACATGAAGCACCCGTCGGATCTG
CCATCTCTGATCCTTGGCCAAGAAAAGCCTTGAATTTTAGGTACGCTGCT
AGTTGCGCGATGGTCATAACTTTCGAAAGCTCTTCAAAGTTTGCAGGCAG
CTTGTATCGCAAGTGTCGGATCTCATTGTTATCATCTGAGGCGACGACTC
TGCTGTCAAGCTTTATGCCAGACAAATACCTCGAGAAGCTTTTGACAAAA
TTTGTTGCTGCTTTGCCATGGCGTAGACACCACCGCTGTTGGCATTGCTA
ACGTCCATGCCTCGAGAAAAGCTCTCAAAGTACTGTCAACTTGCCTTACT
TGTTATCGATCATCTAAGCTCTCTATGCGACTCATGCTCCACAGGTAGTC
AAGGATATCCTGGGTTAGCTCGAAGAAATTTGTGTTGATATTGTGTGCTT
TTAAGAAAAAGAAATTTTGTTAAAAGCAATATTTCTTTTTCTTAGTCTTG
TCAAGGAGTCTACTTGGTTGCATTAAGCCCACTGTTGAAGGCATTACAAG
GTACGTATGACGCCCTCTACCGCCTCTCAAATGACACGAATCTAATTGGA
ATGACTGTACTTAACCACAGAACAGCAAGACACATCATAAGAACTGGTAA
GGAGTCATATTTCGAGTAACCTTCGAAGCCAAAATTTTCAATAAAGGCCC
TGTATGGGTCCGGGACATCCATAGGTATGATTTCTTTAAAAGAGATCTGC
CCGTTGTTTTCAAATTCGTTGATTACCAGGCCTTGGAAACCCCATCGAGC
AAAGCTTATAATAGGTACCCATGAGCCAAGCCAACTGGGCAAGGAAGGTA
AGCGAACTACAAATCCGGCGAATGCTACAATGAGAAAGAGAGCTGCAGGA
AAGATTGACACAGCAACTTGAGTGGTCATTGATGCCAAAGATATCAATTG
GCAGAAATACAATCCACAAAGACCGCATATTGTCACAATCAAAGTAAAAT
AGCCGAAGGCACCTGTATATTGGATAGAAAGAAGTGTTCGAGGTTATACG
ATACCGTTGAAATCATCTCGTCCTTACAGACAGTACACACCTGCTGCATT
GTTCAAACCCGACATGAAGTAGACCACTGTACAGTAAGTAACACTTGCCA
CAACGCATTGGGGTATGTAGGCCAATGAGGAGCTAAACCAGTACGGCGTT
ATACCGTATACACCAGCTCCGCGTTCTCGATAAAAGAGCAAGCGATCATC
AAAGAAGCTGTTATATGGTGTGTAGTTGGAAGTATATCTTCTCGTGAGTT
CTTCCCTCATAAATTCATACTCTAA back to topCoding sequence (CDS) from alignment at CM002465.1:556137..557661- >rna5260 ID=rna5260|Name=rna5260|organism=Nannochloropsis gaditana|type=CDS|length=4266bp|location=Sequence derived from alignment at CM002465.1:556137..557661- (Nannochloropsis gaditana)
CTCCGCGTTCTCGATAAAAGAGCAAGCGATCATCAAAGAAGCTGTTATAT
GGTGTGTAGTTGGAAGTATATCTTCTCGTGAGTTCTTCCCTCATAAATTC
ATACTCTAAAAATACAATCCACAAAGACCGCATATTGTCACAATCAAAGT
AAAATAGCCGAAGGCACCTGTATATTGGATAGAAAGAAGTGTTCGAGGTT
ATACGATACCGTTGAAATCATCTCGTCCTTACAGACAGTACACACCTGCT
GCATTGTTCAAACCCGACATGAAGTAGACCACTGTACAGTAAGTAACACT
TGCCACAACGCATTGGGGCCTTGGAAACCCCATCGAGCAAAGCTTATAAT
AGGTACCCATGAGCCAAGCCAACTGGGCAAGGAAGAACAGCAAGACACAT
CATAAGAACTGGCATTACAAGATGTCTCGAGTGAGCCAGAGCCCAGTGAG
TTTGAAGACCGAGCGTGTCTCTCCAAGCATCGACCCGCATGCCCCTCAAT
CCACCCGATCATCGAGTTCGATTTTTCACTTTAACCTCCTCAGATGGCAA
GGTACCACGAAGAGAAGACAAATCTTCATTGAGGAGTTAGGTACACTGTT
CACTGCGTTGGTCCTTTTTGTTATCAGAAGTCTCACTCTATCGGGCCAAC
ATGAAGCACCCGTCGGATCTGCCATCTCTGATCCTTGGCCAAGAAAAGCC
TTGAATTTTAGCTCCGCGTTCTCGATAAAAGAGCAAGCGATCATCAAAGA
AGCTGTTATATGGTGTGTAGTTGGAAGTATATCTTCTCGTGAGTTCTTCC
CTCATAAATTCATACTCTAAAAATACAATCCACAAAGACCGCATATTGTC
ACAATCAAAGTAAAATAGCCGAAGGCACCTGTATATTGGATAGAAAGAAG
TGTTCGAGGTTATACGATACCGTTGAAATCATCTCGTCCTTACAGACAGT
ACACACCTGCTGCATTGTTCAAACCCGACATGAAGTAGACCACTGTACAG
TAAGTAACACTTGCCACAACGCATTGGGGCCTTGGAAACCCCATCGAGCA
AAGCTTATAATAGGTACCCATGAGCCAAGCCAACTGGGCAAGGAAGAACA
GCAAGACACATCATAAGAACTGGCATTACAAGATGTCTCGAGTGAGCCAG
AGCCCAGTGAGTTTGAAGACCGAGCGTGTCTCTCCAAGCATCGACCCGCA
TGCCCCTCAATCCACCCGATCATCGAGTTCGATTTTTCACTTTAACCTCC
TCAGATGGCAAGGTACCACGAAGAGAAGACAAATCTTCATTGAGGAGTTA
GGTACACTGTTCACTGCGTTGGTCCTTTTTGTTATCAGAAGTCTCACTCT
ATCGGGCCAACATGAAGCACCCGTCGGATCTGCCATCTCTGATCCTTGGC
CAAGAAAAGCCTTGAATTTTAGCTCCGCGTTCTCGATAAAAGAGCAAGCG
ATCATCAAAGAAGCTGTTATATGGTGTGTAGTTGGAAGTATATCTTCTCG
TGAGTTCTTCCCTCATAAATTCATACTCTAAAAATACAATCCACAAAGAC
CGCATATTGTCACAATCAAAGTAAAATAGCCGAAGGCACCTGTATATTGG
ATAGAAAGAAGTGTTCGAGGTTATACGATACCGTTGAAATCATCTCGTCC
TTACAGACAGTACACACCTGCTGCATTGTTCAAACCCGACATGAAGTAGA
CCACTGTACAGTAAGTAACACTTGCCACAACGCATTGGGGCCTTGGAAAC
CCCATCGAGCAAAGCTTATAATAGGTACCCATGAGCCAAGCCAACTGGGC
AAGGAAGAACAGCAAGACACATCATAAGAACTGGCATTACAAGATGTCTC
GAGTGAGCCAGAGCCCAGTGAGTTTGAAGACCGAGCGTGTCTCTCCAAGC
ATCGACCCGCATGCCCCTCAATCCACCCGATCATCGAGTTCGATTTTTCA
CTTTAACCTCCTCAGATGGCAAGGTACCACGAAGAGAAGACAAATCTTCA
TTGAGGAGTTAGGTACACTGTTCACTGCGTTGGTCCTTTTTGTTATCAGA
AGTCTCACTCTATCGGGCCAACATGAAGCACCCGTCGGATCTGCCATCTC
TGATCCTTGGCCAAGAAAAGCCTTGAATTTTAGCTCCGCGTTCTCGATAA
AAGAGCAAGCGATCATCAAAGAAGCTGTTATATGGTGTGTAGTTGGAAGT
ATATCTTCTCGTGAGTTCTTCCCTCATAAATTCATACTCTAAAAATACAA
TCCACAAAGACCGCATATTGTCACAATCAAAGTAAAATAGCCGAAGGCAC
CTGTATATTGGATAGAAAGAAGTGTTCGAGGTTATACGATACCGTTGAAA
TCATCTCGTCCTTACAGACAGTACACACCTGCTGCATTGTTCAAACCCGA
CATGAAGTAGACCACTGTACAGTAAGTAACACTTGCCACAACGCATTGGG
GCCTTGGAAACCCCATCGAGCAAAGCTTATAATAGGTACCCATGAGCCAA
GCCAACTGGGCAAGGAAGAACAGCAAGACACATCATAAGAACTGGCATTA
CAAGATGTCTCGAGTGAGCCAGAGCCCAGTGAGTTTGAAGACCGAGCGTG
TCTCTCCAAGCATCGACCCGCATGCCCCTCAATCCACCCGATCATCGAGT
TCGATTTTTCACTTTAACCTCCTCAGATGGCAAGGTACCACGAAGAGAAG
ACAAATCTTCATTGAGGAGTTAGGTACACTGTTCACTGCGTTGGTCCTTT
TTGTTATCAGAAGTCTCACTCTATCGGGCCAACATGAAGCACCCGTCGGA
TCTGCCATCTCTGATCCTTGGCCAAGAAAAGCCTTGAATTTTAGCTCCGC
GTTCTCGATAAAAGAGCAAGCGATCATCAAAGAAGCTGTTATATGGTGTG
TAGTTGGAAGTATATCTTCTCGTGAGTTCTTCCCTCATAAATTCATACTC
TAAAAATACAATCCACAAAGACCGCATATTGTCACAATCAAAGTAAAATA
GCCGAAGGCACCTGTATATTGGATAGAAAGAAGTGTTCGAGGTTATACGA
TACCGTTGAAATCATCTCGTCCTTACAGACAGTACACACCTGCTGCATTG
TTCAAACCCGACATGAAGTAGACCACTGTACAGTAAGTAACACTTGCCAC
AACGCATTGGGGCCTTGGAAACCCCATCGAGCAAAGCTTATAATAGGTAC
CCATGAGCCAAGCCAACTGGGCAAGGAAGAACAGCAAGACACATCATAAG
AACTGGCATTACAAGATGTCTCGAGTGAGCCAGAGCCCAGTGAGTTTGAA
GACCGAGCGTGTCTCTCCAAGCATCGACCCGCATGCCCCTCAATCCACCC
GATCATCGAGTTCGATTTTTCACTTTAACCTCCTCAGATGGCAAGGTACC
ACGAAGAGAAGACAAATCTTCATTGAGGAGTTAGGTACACTGTTCACTGC
GTTGGTCCTTTTTGTTATCAGAAGTCTCACTCTATCGGGCCAACATGAAG
CACCCGTCGGATCTGCCATCTCTGATCCTTGGCCAAGAAAAGCCTTGAAT
TTTAGCTCCGCGTTCTCGATAAAAGAGCAAGCGATCATCAAAGAAGCTGT
TATATGGTGTGTAGTTGGAAGTATATCTTCTCGTGAGTTCTTCCCTCATA
AATTCATACTCTAAAAATACAATCCACAAAGACCGCATATTGTCACAATC
AAAGTAAAATAGCCGAAGGCACCTGTATATTGGATAGAAAGAAGTGTTCG
AGGTTATACGATACCGTTGAAATCATCTCGTCCTTACAGACAGTACACAC
CTGCTGCATTGTTCAAACCCGACATGAAGTAGACCACTGTACAGTAAGTA
ACACTTGCCACAACGCATTGGGGCCTTGGAAACCCCATCGAGCAAAGCTT
ATAATAGGTACCCATGAGCCAAGCCAACTGGGCAAGGAAGAACAGCAAGA
CACATCATAAGAACTGGCATTACAAGATGTCTCGAGTGAGCCAGAGCCCA
GTGAGTTTGAAGACCGAGCGTGTCTCTCCAAGCATCGACCCGCATGCCCC
TCAATCCACCCGATCATCGAGTTCGATTTTTCACTTTAACCTCCTCAGAT
GGCAAGGTACCACGAAGAGAAGACAAATCTTCATTGAGGAGTTAGGTACA
CTGTTCACTGCGTTGGTCCTTTTTGTTATCAGAAGTCTCACTCTATCGGG
CCAACATGAAGCACCCGTCGGATCTGCCATCTCTGATCCTTGGCCAAGAA
AAGCCTTGAATTTTAG back to top
|