EWM25421.1, cds5247 (CDS) Nannochloropsis gaditana

Overview
NameEWM25421.1
Unique Namecds5247
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:557372..557661 -
Alignment locationCM002465.1:556912..556921 -
Alignment locationCM002465.1:556816..556841 -
Alignment locationCM002465.1:556615..556682 -
Alignment locationCM002465.1:556300..556507 -
Alignment locationCM002465.1:556137..556245 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25421.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g48.6715.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:557372..557661 -
CM002465.1supercontigCM002465.1:556912..556921 -
CM002465.1supercontigCM002465.1:556816..556841 -
CM002465.1supercontigCM002465.1:556615..556682 -
CM002465.1supercontigCM002465.1:556300..556507 -
CM002465.1supercontigCM002465.1:556137..556245 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25421.1 vs. NCBI_GenBank
Match: gi|585107182|gb|EWM25421.1| (hypothetical protein Naga_100005g48 [Nannochloropsis gaditana])

HSP 1 Score: 486.878 bits (1252), Expect = 4.055e-174
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0 
Query:    1 MSRVSQSPVSLKTERVSPSIDPHAPQSTRSSSSIFHFNLLRWQGTTKRRQIFIEELGTLFTALVLFVIRSLTLSGQHEAPVGSAISDPWPRKALNFRHYKNSKTHHKNWPWKPHRAKLIIGTHEPSQLGKEEIQSTKTAYCHNQSKIAEGTCILDRKKCSRLYDTVEIISSLQTVHTCCIVQTRHEVDHCTVSNTCHNALGSAFSIKEQAIIKEAVIWCVVGSISSREFFPHKFIL 236
            MSRVSQSPVSLKTERVSPSIDPHAPQSTRSSSSIFHFNLLRWQGTTKRRQIFIEELGTLFTALVLFVIRSLTLSGQHEAPVGSAISDPWPRKALNFRHYKNSKTHHKNWPWKPHRAKLIIGTHEPSQLGKEEIQSTKTAYCHNQSKIAEGTCILDRKKCSRLYDTVEIISSLQTVHTCCIVQTRHEVDHCTVSNTCHNALGSAFSIKEQAIIKEAVIWCVVGSISSREFFPHKFIL
Sbjct:    1 MSRVSQSPVSLKTERVSPSIDPHAPQSTRSSSSIFHFNLLRWQGTTKRRQIFIEELGTLFTALVLFVIRSLTLSGQHEAPVGSAISDPWPRKALNFRHYKNSKTHHKNWPWKPHRAKLIIGTHEPSQLGKEEIQSTKTAYCHNQSKIAEGTCILDRKKCSRLYDTVEIISSLQTVHTCCIVQTRHEVDHCTVSNTCHNALGSAFSIKEQAIIKEAVIWCVVGSISSREFFPHKFIL 236
The following BLAST results are available for this feature:
BLAST of EWM25421.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107182|gb|EWM25421.1|4.055e-174100.00hypothetical protein Naga_100005g48 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5260rna5260Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications