rna5258, rna5258 (mRNA) Nannochloropsis gaditana

Overview
Namerna5258
Unique Namerna5258
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length297
Alignment locationCM002465.1:548932..549285 -

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Properties
Property NameValue
Producthistone h2b
Orig transcript idgnl|cribi|Naga_100005g46.6759.mrna
Orig protein idgnl|cribi|Naga_100005g46.6759
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:548932..549285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g46gene5078Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25465.1cds5245Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5258rna5258-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5258 ID=rna5258|Name=rna5258|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGTGTATAAATGGAATGTTGTTTGGCAGGCCCATGGACACATCTTTACG
GAAACAATATTTGTCAGCGAATGGAAGATGCCCATTGAGTATTTGCATCT
TTGGACGGGACACAAGACTCATCCCGTCACTTAGTAAGGGAAACGACAAA
TGGACACACTTCTCGAGCAGTGCCATGATGGCTCGTTCGCTTAATAAAAA
GGACAGTTATTCATGGGTTTTAAACCAAGTGAATATAGGCTCGTATCGTG
ATTTCCTCGTGTCGAATCTGCATTTCATCCTGCTTTTGAGAGAATGA
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protein sequence of rna5258

>rna5258-protein ID=rna5258-protein|Name=rna5258|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRG
VSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAK
HAVSEGTKAVTKYTSSS
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mRNA from alignment at CM002465.1:548932..549285-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5258 ID=rna5258|Name=rna5258|organism=Nannochloropsis gaditana|type=mRNA|length=354bp|location=Sequence derived from alignment at CM002465.1:548932..549285- (Nannochloropsis gaditana)
ATGGCTAAAACTCCTTCAAAGAAGTCTGCGAAAGCCCCGAAGAAGGCTGG
CAAAGGCACGAAGAAAAAGACCCGTGTCGAAAGCTATGGCTCGTACATCT
ACAAGGTGTTGAAGCAAGTACATCCTGACACTGGTATCTCCAAACGTGGC
GTTTCGATTCTCAATTCTTTCATCGGAGACATTTTCGACCGTCTGGCAAC
GGAGGCCGGCAAACTTGCCCGATACACTAAGAAGTCCACCCTTTCTTCCC
GGGAGATCCAGACGGCAGTACGCCTTACTCTTCCTGGTGAACTGGCGAAG
CACGCCGTCTCTGAAGGAACGAAGGCTGTCACCAAATATACCTCTAGCTC
CTAA
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Coding sequence (CDS) from alignment at CM002465.1:548932..549285-

>rna5258 ID=rna5258|Name=rna5258|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at CM002465.1:548932..549285- (Nannochloropsis gaditana)
ATGGCTAAAACTCCTTCAAAGAAGTCTGCGAAAGCCCCGAAGAAGGCTGG
CAAAGGCACGAAGAAAAAGACCCGTGTCGAAAGCTATGGCTCGTACATCT
ACAAGGTGTTGAAGCAAGTACATCCTGACACTGGTATCTCCAAACGTGGC
GTTTCGATTCTCAATTCTTTCATCGGAGACATTTTCGACCGTCTGGCAAC
GGAGGCCGGCAAACTTGCCCGATACACTAAGAAGTCCACCCTTTCTTCCC
GGGAGATCCAGACGGCAGTACGCCTTACTCTTCCTGGTGAACTGGCGAAG
CACGCCGTCTCTGAAGGAACGAAGGCTGTCACCAAATATACCTCTAGCTC
CTAA
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Synonyms
Publications