EWM25465.1, cds5245 (CDS) Nannochloropsis gaditana

Overview
NameEWM25465.1
Unique Namecds5245
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:548932..549285 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25465.1
Producthistone h2b
Orig transcript idgnl|cribi|Naga_100005g46.6759.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:548932..549285 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR000558Histone_H2B
Homology
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|585101906|gb|EWM21651.1| (histone h2b [Nannochloropsis gaditana] >gi|585107226|gb|EWM25465.1| histone h2b [Nannochloropsis gaditana])

HSP 1 Score: 231.106 bits (588), Expect = 9.327e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
            MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|377774510|gb|AFB75403.1| (histone [Nannochloropsis sp. CCMP1779])

HSP 1 Score: 230.72 bits (587), Expect = 1.580e-76
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
            MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSRE+QTAVRLTLPGELAKHAVSEGTKAVTKYTSSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|219116831|ref|XP_002179210.1| (histone H2B isoform 1b [Phaeodactylum tricornutum CCAP 1055/1] >gi|219117513|ref|XP_002179551.1| histone H2B isoform 1a [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409101|gb|EEC49033.1| histone H2B isoform 1b [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409442|gb|EEC49374.1| histone H2B isoform 1a [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 197.208 bits (500), Expect = 2.092e-63
Identity = 96/116 (82.76%), Postives = 106/116 (91.38%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
            MAKTPSK+SAKAPKKA  GTK K R E+Y SYIYKVLKQVHPDTGISK+G+SI+NSFI DIF+R+ATEAGKLA Y KK+TLSSREIQTAVRL LPGELAKHAVSEGTKAVTK++SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|1173935126|gb|OQR86299.1| (histone H2B isoform 1b [Achlya hypogyna])

HSP 1 Score: 191.43 bits (485), Expect = 4.817e-61
Identity = 96/119 (80.67%), Postives = 108/119 (90.76%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKAGKGTKKKT--RVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
            MAKTPSK SAKAPKK+G  +K K   RVESY +YIYKVLKQVHP+TGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSREIQTAVRL LPGELAKHAVSEGTKAVTK+TSS+
Sbjct:    1 MAKTPSKTSAKAPKKSGDKSKAKKGKRVESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 119
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|1210513932|dbj|GAX27231.1| (histone H2B [Fistulifera solaris])

HSP 1 Score: 191.045 bits (484), Expect = 8.073e-61
Identity = 95/118 (80.51%), Postives = 108/118 (91.53%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKA-GKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
            MAKTPSK+SAKAPKKA G  TK K R E+Y SYIYKVLKQVHPDTGISK+G+SI+NSFI DIF+R+ATEAGKL+ Y+KK+TLSSREIQTAVRL LPGELAKHAVSEGTKAVTK++SS+
Sbjct:    1 MAKTPSKQSAKAPKKATGAKTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLSTYSKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSSA 118
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|1173937055|gb|OQR87918.1| (histone H2B isoform 1b [Achlya hypogyna])

HSP 1 Score: 182.57 bits (462), Expect = 1.356e-57
Identity = 96/118 (81.36%), Postives = 106/118 (89.83%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKAGKGTKKKT-RVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
            MAKTPSKKSAKAPK   KG  KK  R ESY +YIYKVLKQVHP+TGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSREIQTAVRL LPGELAKHAVSEGTKAVTK+TSS+
Sbjct:    1 MAKTPSKKSAKAPKTGEKGKAKKGKRTESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 118
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|1072223155|gb|OEU07912.1| (histone-fold-containing protein [Fragilariopsis cylindrus CCMP1102] >gi|1072227471|gb|OEU12210.1| histone-fold-containing protein [Fragilariopsis cylindrus CCMP1102] >gi|1072236150|gb|OEU20878.1| histone-fold-containing protein [Fragilariopsis cylindrus CCMP1102] >gi|1072237432|gb|OEU22159.1| histone-fold-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 181.415 bits (459), Expect = 5.749e-57
Identity = 92/121 (76.03%), Postives = 106/121 (87.60%), Query Frame = 0 
Query:    1 MAKTPSKKSAK--APKKAGKGT---KKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
            MAKTPSK+S+K  AP K   GT   +KK RVESY +YIYKVLKQVHPDTGISK+G+SI+NSFI DIF+R+ATEAGKL +Y KK+TLSSREIQTAVRL LPGELAKHAVSEGTKAVTK++S+
Sbjct:    1 MAKTPSKQSSKKAAPAKKTDGTTTKRKKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLGKYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|1173945305|gb|OQR93946.1| (histone H2B isoform 1b [Thraustotheca clavata])

HSP 1 Score: 180.644 bits (457), Expect = 9.131e-57
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKAGKGTKKKT--RVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
            MAKTPSK +AK PK AGK T  K   R ESY +YIYKVLKQVHP+TGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSREIQTAVRL LPGELAKHAVSEGTKAVTK+TSS+
Sbjct:    1 MAKTPSKTAAKNPKAAGKKTGSKKGKRTESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 119
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|301117880|ref|XP_002906668.1| (histone H2B [Phytophthora infestans T30-4] >gi|675197025|ref|XP_008907397.1| histone H2B [Phytophthora parasitica INRA-310] >gi|262108017|gb|EEY66069.1| histone H2B [Phytophthora infestans T30-4] >gi|566020866|gb|ETI43777.1| histone H2B [Phytophthora parasitica P1569] >gi|567958250|gb|ETK83842.1| histone H2B [Phytophthora parasitica] >gi|567986942|gb|ETL37257.1| histone H2B [Phytophthora parasitica] >gi|568016219|gb|ETL90396.1| histone H2B [Phytophthora parasitica] >gi|568046596|gb|ETM43701.1| histone H2B [Phytophthora parasitica] >gi|568092212|gb|ETN07021.1| histone H2B [Phytophthora parasitica INRA-310] >gi|570324505|gb|ETO72453.1| histone H2B [Phytophthora parasitica P1976] >gi|570948331|gb|ETP13588.1| histone H2B [Phytophthora parasitica CJ01A1] >gi|570981177|gb|ETP41651.1| histone H2B [Phytophthora parasitica P10297] >gi|970616775|gb|KUF64921.1| Histone H2B [Phytophthora nicotianae] >gi|970658665|gb|KUF96403.1| Signal transducer and transcription activator 6 [Phytophthora nicotianae])

HSP 1 Score: 178.333 bits (451), Expect = 7.433e-56
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 0 
Query:    1 MAKTPSKKSAK-APKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
            MAKTPSKK+AK   K      K K RVESY +YIYKVL+QVHPDTGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSREIQTAVRL LPGELAKHAVSEGTKAVTK+TS+
Sbjct:    1 MAKTPSKKAAKTVAKSGKGKGKGKKRVESYSTYIYKVLRQVHPDTGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 117
[Close]
BLAST of EWM25465.1 vs. NCBI_GenBank
Match: gi|301117766|ref|XP_002906611.1| (histone H2B [Phytophthora infestans T30-4] >gi|675189509|ref|XP_008903639.1| histone H2B [Phytophthora parasitica INRA-310] >gi|262107960|gb|EEY66012.1| histone H2B [Phytophthora infestans T30-4] >gi|566026130|gb|ETI49041.1| histone H2B [Phytophthora parasitica P1569] >gi|567963410|gb|ETK88909.1| histone H2B [Phytophthora parasitica] >gi|567992108|gb|ETL42307.1| histone H2B [Phytophthora parasitica] >gi|568021391|gb|ETL95481.1| histone H2B [Phytophthora parasitica] >gi|568051781|gb|ETM48680.1| histone H2B [Phytophthora parasitica] >gi|568096406|gb|ETN11157.1| histone H2B [Phytophthora parasitica INRA-310] >gi|570329831|gb|ETO77779.1| histone H2B [Phytophthora parasitica P1976] >gi|570953551|gb|ETP18808.1| histone H2B [Phytophthora parasitica CJ01A1] >gi|570988262|gb|ETP46729.1| histone H2B [Phytophthora parasitica P10297] >gi|953499226|emb|CEG39538.1| histone h2b [Plasmopara halstedii] >gi|970628015|gb|KUF75776.1| Histone H2B [Phytophthora nicotianae] >gi|970657123|gb|KUF95047.1| hypothetical protein AM588_10011059 [Phytophthora nicotianae] >gi|970664189|gb|KUG01168.1| Histone H2B [Phytophthora nicotianae])

HSP 1 Score: 177.948 bits (450), Expect = 1.082e-55
Identity = 93/116 (80.17%), Postives = 105/116 (90.52%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
            MAKTPSKK+AK   K+GK  K K RVESY +YIYKVL+QVHPDTGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSREIQTAVRL LPGELAKHAVSEGTKAVTK+TS+
Sbjct:    1 MAKTPSKKAAKTVAKSGK-GKGKKRVESYSTYIYKVLRQVHPDTGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 115
The following BLAST results are available for this feature:
BLAST of EWM25465.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101906|gb|EWM21651.1|9.327e-77100.00histone h2b [Nannochloropsis gaditana] >gi|5851072... [more]
gi|377774510|gb|AFB75403.1|1.580e-7699.15histone [Nannochloropsis sp. CCMP1779][more]
gi|219116831|ref|XP_002179210.1|2.092e-6382.76histone H2B isoform 1b [Phaeodactylum tricornutum ... [more]
gi|1173935126|gb|OQR86299.1|4.817e-6180.67histone H2B isoform 1b [Achlya hypogyna][more]
gi|1210513932|dbj|GAX27231.1|8.073e-6180.51histone H2B [Fistulifera solaris][more]
gi|1173937055|gb|OQR87918.1|1.356e-5781.36histone H2B isoform 1b [Achlya hypogyna][more]
gi|1072223155|gb|OEU07912.1|5.749e-5776.03histone-fold-containing protein [Fragilariopsis cy... [more]
gi|1173945305|gb|OQR93946.1|9.131e-5778.99histone H2B isoform 1b [Thraustotheca clavata][more]
gi|301117880|ref|XP_002906668.1|7.433e-5677.78histone H2B [Phytophthora infestans T30-4] >gi|675... [more]
gi|301117766|ref|XP_002906611.1|1.082e-5580.17histone H2B [Phytophthora infestans T30-4] >gi|675... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5258rna5258Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications