rna524, rna524 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna524
Unique Name	rna524
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1515
Alignment location	CM002455.1:1315128..1316645 -

Link to JBrowse

Properties


Property Name	Value
Product	putative alpha-ketoglutarate-dependent dioxygenase abh6
Orig transcript id	gnl\|cribi\|Naga_100115g12.6576.mrna
Orig protein id	gnl\|cribi\|Naga_100115g12.6576
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1315128..1316645 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100115g12	gene506	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna524	rna524-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30151.1	cds524	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1315128..1316645-
coding sequence from alignment at CM002455.1:1315128..1316645-

mRNA sequence

>rna524 ID=rna524|Name=rna524|organism=Nannochloropsis gaditana|type=mRNA|length=1515bp
ATGGAATTAAGGTGCTCGATCCGTCACGTCGTTGATGGCGACCTCCCATT
CGTTGCGCTTCCCCCAGGATCCTCCGTCGCGAATTGCCTGAAAGGACACC
CCACCCTGTGGATGCCCCGTGATATTGCTCGTGTATGTCTGTTATATGTT
GTCTCATATCATGTCATGAATCCTGATGGAGAAGTTTGCCATTCACTTCA
CGAACCTCCCCCAGCATCTCACAACCGCATCGCCCTCTCCCTATTGACCC
CCTTCCCAGATGATGATGGATCCCCACGCTACCCGGCATCTTCCACAATT
GATCGCACGTCTTCCTCGGCCACCGCCACTGGTGATATCCCGCGTACTGC
ATCGATCTCTCATTTAAGTCAGGAGGCGGCCAAAGTCAAAATCATCCGGG
AAGCGATCCGTGCTGAGGACAAGCGGCTGCGAGCCCGCTATTTCTTTTTG
CGAGAGGAGTGGCAAGATACGATCGGTACGGTCATCTACCTAACAGCAGC
GTTATCATGGGCAGCCATTTCGTATTCCTGGTATTGTGGGCTCATCGCGA
CGCCCGTGACGATCGTCGGCAACGCCCTGGCCATCTCTCTTCTGCACGAG
ATGGAGCACGATCTCATTCACGACTTGTATTTCAAGAGGGTAAAGTGGGT
GCAGAATGCTATGTTTGCCTTCATATGGGTCATCAAGAGCAATGCCAATC
CCTGGTGGCGACGATATTATCACCTCCGGCACCATCAATACGCCGGTCAG
GTCGTGGACGTGGAGGAGCGCCTGATAGGTCTCGGTCTGCCCTGGTATTC
TTGGAAACGCATCTTGGTCACCTTCACACCAGCGGCCACGCTGCTGATCG
CCAACGACATTGCCAAGGACGATCCCGAATTTTCCAAGAAAGTTCTTGTT
CGATACAACGCGCCGGTCATCGCCTTCTCGACCGTGGCGATGGTTTTGCA
CCTCTTGTACTACCTGGGGGTGGGAGAGGCGCTGGTCTCTGTAGGGATAT
TCCCTCCAGCCTTCTACGCGTTCCTCCTCCGCGTCGTTCTCCCTTTCGTG
GTCGTGTACAACGGCACAGTTAACCTCCCTAACGTCCTCCGCCAGTCGTG
CCTCGTCATCATCAGTACCTACTGCCACTACTACGGCGACATTCCCGAGC
GGGACGTGTTTTTCCAAACGCAAGTCCTGAACCATCCTGTGCTCTGGCCC
TTCCAGCTCTTCTGTTTCAATTTTGGCGCCACTCACATTATCCATCACTT
CGTCACGCGCCAGCCGTTTTATCTTAGGCAGCTAACGGCCTTTAAGGTGA
CGCCCATCCTGCTGGAACAGGGGTGCCGTCACAATGATCTGGGGAATCAC
TTCCGGGCAAACCGATGGGGTAAAGAGATGAGGGCGATGACTTTGGAGCG
AAGGCATTTTTGGGTGGTTTGTGTAACATACGTATGGCTAGATATGATGG
ATGGGGTGATCTATGTGAATTTTGAGGGCGATGGCATTGCGGAGTTAAGG
CCTTCAAGAACTTGA

protein sequence of rna524

>rna524-protein ID=rna524-protein|Name=rna524|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MPALDFQTLLRQERNRVRHEMDQTNNKTHSGSPRAEESEEGHQHHDDDKE
DTTCFNFAARMDALLDSVMASHVQSAAPEDGDMDIMATAAAKVVEESEQV
RHCLRARLNPEYLTRATTECDLSKHAIRGPPDGVFYVPEYISKEMEQEIM
EVAHSMPVNQWVKLRGRRLQCFGGKPTENVRSFQSEALPPWIGQVCRTLM
LAGVFDEEIIPNHVLLNEYEPGQGIMAHADGPFYHSRVAIISLGGPAIFR
FKRRLIAEEISADSQESVPAGTVVLEPRSLIVFEGEAYHDYLHEIAAVEE
EVVGGTEGTTPVLNLASLEGRINVGDRLKRALRLSLTCRRVKEEGEVKDQ
DDAN

mRNA from alignment at CM002455.1:1315128..1316645-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna524 ID=rna524|Name=rna524|organism=Nannochloropsis gaditana|type=mRNA|length=1518bp|location=Sequence derived from alignment at CM002455.1:1315128..1316645- (Nannochloropsis gaditana)
CAACAGACCACATTGACGCACATGCTTCCTTTCCGCGCAGTGACAGCCCG
ACATCGTTTTTTTTTCGTCTACAGCTCCACAATCTGCTGTGCTTCTGTAC
AGTGTACCAGGCAGGCAAATAATGCCGGCGCTTGACTTCCAAACCTTGCT
TAGGCAGGAACGAAATAGGGTGCGTCACGAGATGGATCAAACAAACAATA
AAACGCATAGCGGGAGTCCACGCGCGGAAGAATCGGAGGAAGGCCATCAA
CATCATGATGATGATAAGGAGGACACGACATGCTTTAATTTTGCTGCACG
CATGGATGCTTTGTTGGACTCTGTAATGGCAAGCCATGTCCAATCAGCCG
CTCCCGAAGACGGAGACATGGACATCATGGCAACGGCGGCGGCTAAAGTT
GTGGAGGAAAGCGAACAAGTGCGGCATTGCCTTCGGGCCCGTTTGAATCC
TGAATACCTCACTCGTGCGACGACAGAGTGTGATCTCTCAAAGCACGCAA
TACGGGGCCCTCCAGACGGAGTATTCTACGTGCCCGAGTATATCTCCAAA
GAGATGGAGCAGGAGATAATGGAAGTCGCACACAGCATGCCGGTGAATCA
GTGGGTCAAGTTGCGTGGCCGGCGTCTGCAATGTTTTGGCGGGAAGCCAA
CCGAAAATGTGCGCAGCTTTCAATCCGAAGCGCTTCCTCCGTGGATCGGT
CAAGTGTGTCGCACGCTGATGCTGGCAGGGGTTTTCGACGAAGAAATCAT
ACCAAACCATGTGGTTAGTCGACCGAAAGATGTAGCTAGATATGCCAGAT
GAAAAGGAGGGCTATATATCGTTTTCAGTACCAAGCAGCTATCTTGCGCA
CCCCTCACCCCTTCTTCTATCGCTGGGTTCCCTATCTCGTCGGCTCAGAC
CCTTTCAGCGACGATGGTATCCTCATTCTCTTTATGTTTTTGATGCACCC
CCCACTACAGCTCCTGAACGAATATGAGCCAGGGCAAGGGATTATGGCCC
ACGCGGACGGACCTTTCTACCACTCTCGCGTCGCCATAATAAGTCTAGGC
GGTCCCGCCATTTTTCGGTTCAAACGACGATTAATTGCCGAAGAGATATC
GGCGGACAGCCAGGAATCAGTACCGGCAGGGACTGTTGTCCTGGAACCTC
GGAGTTTGATTGTCTTTGAGGGAGAGGCCTACCACGATTACCTGCATGAG
ATTGCAGCCGTCGAAGAGGAGGTAGTTGGCGGGACCGAGGGGACGACTCC
TGTGCTGAACCTGGCGTCCCTGGAAGGACGGATAAATGTAGGCGACCGAC
TAAAACGAGCTTTGCGGTTGTCGTTGACTTGTCGGAGGGTGAAGGAGGAG
GGAGAAGTCAAAGATCAAGATGACGCGAATTGACGGGATTTGGTCAAATG
GTGAGGGTGAGAAGGACAAAATATGACCTGTACAGGCCTCTTCCAAGGTT
TATAAGCAATGGGATTCATAAAGAATCTGGCAAAACTCCAATGGTGATGG
AATTATAGTTTGTTTTCT

Coding sequence (CDS) from alignment at CM002455.1:1315128..1316645-

>rna524 ID=rna524|Name=rna524|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002455.1:1315128..1316645- (Nannochloropsis gaditana)
CTCCTGAACGAATATGAGCCAGGGCAAGGGATTATGGCCCACGCGGACGG
ACCTTTCTACCACTCTCGCGTCGCCATAATAAGTCTAGGCGGTCCCGCCA
TTTTTCGGTTCAAACGACGATTAATTGCCGAAGAGATATCGGCGGACAGC
CAGGAATCAGTACCGGCAGGGACTGTTGTCCTGGAACCTCGGAGTTTGAT
TGTCTTTGAGGGAGAGGCCTACCACGATTACCTGCATGAGATTGCAGCCG
TCGAAGAGGAGGTAGTTGGCGGGACCGAGGGGACGACTCCTGTGCTGAAC
CTGGCGTCCCTGGAAGGACGGATAAATGTAGGCGACCGACTAAAACGAGC
TTTGCGGTTGTCGTTGACTTGTCGGAGGGTGAAGGAGGAGGGAGAAGTCA
AAGATCAAGATGACGCGAATTGAATGCCGGCGCTTGACTTCCAAACCTTG
CTTAGGCAGGAACGAAATAGGGTGCGTCACGAGATGGATCAAACAAACAA
TAAAACGCATAGCGGGAGTCCACGCGCGGAAGAATCGGAGGAAGGCCATC
AACATCATGATGATGATAAGGAGGACACGACATGCTTTAATTTTGCTGCA
CGCATGGATGCTTTGTTGGACTCTGTAATGGCAAGCCATGTCCAATCAGC
CGCTCCCGAAGACGGAGACATGGACATCATGGCAACGGCGGCGGCTAAAG
TTGTGGAGGAAAGCGAACAAGTGCGGCATTGCCTTCGGGCCCGTTTGAAT
CCTGAATACCTCACTCGTGCGACGACAGAGTGTGATCTCTCAAAGCACGC
AATACGGGGCCCTCCAGACGGAGTATTCTACGTGCCCGAGTATATCTCCA
AAGAGATGGAGCAGGAGATAATGGAAGTCGCACACAGCATGCCGGTGAAT
CAGTGGGTCAAGTTGCGTGGCCGGCGTCTGCAATGTTTTGGCGGGAAGCC
AACCGAAAATGTGCGCAGCTTTCAATCCGAAGCGCTTCCTCCGTGGATCG
GTCAAGTGTGTCGCACGCTGATGCTGGCAGGGGTTTTCGACGAAGAAATC
ATACCAAACCATGTGCTCCTGAACGAATATGAGCCAGGGCAAGGGATTAT
GGCCCACGCGGACGGACCTTTCTACCACTCTCGCGTCGCCATAATAAGTC
TAGGCGGTCCCGCCATTTTTCGGTTCAAACGACGATTAATTGCCGAAGAG
ATATCGGCGGACAGCCAGGAATCAGTACCGGCAGGGACTGTTGTCCTGGA
ACCTCGGAGTTTGATTGTCTTTGAGGGAGAGGCCTACCACGATTACCTGC
ATGAGATTGCAGCCGTCGAAGAGGAGGTAGTTGGCGGGACCGAGGGGACG
ACTCCTGTGCTGAACCTGGCGTCCCTGGAAGGACGGATAAATGTAGGCGA
CCGACTAAAACGAGCTTTGCGGTTGTCGTTGACTTGTCGGAGGGTGAAGG
AGGAGGGAGAAGTCAAAGATCAAGATGACGCGAATTGAATGCCGGCGCTT
GACTTCCAAACCTTGCTTAGGCAGGAACGAAATAGGGTGCGTCACGAGAT
GGATCAAACAAACAATAAAACGCATAGCGGGAGTCCACGCGCGGAAGAAT
CGGAGGAAGGCCATCAACATCATGATGATGATAAGGAGGACACGACATGC
TTTAATTTTGCTGCACGCATGGATGCTTTGTTGGACTCTGTAATGGCAAG
CCATGTCCAATCAGCCGCTCCCGAAGACGGAGACATGGACATCATGGCAA
CGGCGGCGGCTAAAGTTGTGGAGGAAAGCGAACAAGTGCGGCATTGCCTT
CGGGCCCGTTTGAATCCTGAATACCTCACTCGTGCGACGACAGAGTGTGA
TCTCTCAAAGCACGCAATACGGGGCCCTCCAGACGGAGTATTCTACGTGC
CCGAGTATATCTCCAAAGAGATGGAGCAGGAGATAATGGAAGTCGCACAC
AGCATGCCGGTGAATCAGTGGGTCAAGTTGCGTGGCCGGCGTCTGCAATG
TTTTGGCGGGAAGCCAACCGAAAATGTGCGCAGCTTTCAATCCGAAGCGC
TTCCTCCGTGGATCGGTCAAGTGTGTCGCACGCTGATGCTGGCAGGGGTT
TTCGACGAAGAAATCATACCAAACCATGTG

Synonyms

Publications