rna5238, rna5238 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5238
Unique Name	rna5238
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2361
Alignment location	CM002465.1:501078..502800 -

Link to JBrowse

Properties


Property Name	Value
Product	photosystem ii 11 kd protein
Orig transcript id	gnl\|cribi\|Naga_100005g25.6678.mrna
Orig protein id	gnl\|cribi\|Naga_100005g25.6678
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:501078..502800 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g25	gene5058	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5238	rna5238-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25384.1	cds5225	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:501078..502800-
coding sequence from alignment at CM002465.1:501078..502800-

mRNA sequence

>rna5238 ID=rna5238|Name=rna5238|organism=Nannochloropsis gaditana|type=mRNA|length=2361bp
GCGCATGCTCCCAGGGATTGGCGGACATTTTTTAAAAGACATATATAGCC
AACATAATAGCCCATCGTCTGGTCGATCGCCTCCTGCGGGACACGCGGGA
GGATGGTGCCCATGCACCTTGGAACTCATGCTGACTTCCAGCTTGTACCT
TTGTTACGATTACAATTATAATCATCGTCGACAGGGTCCCATAATTTTTC
ATTATACTTCAATCTGGCGAAGCACAGTGACGACGTGGAACTTGTGAGAA
AAGGCATTTCTTGGAAGAAAACTGCCTTGTCTTTTTGGGGGGGGGCTCTT
ACCCGCCCGCCCAGCCTCTGGCCAGCCTGCAGCCATGGGCCTTAGGCACT
CGGCTCCGGCCACGAGTGAAGATGTCACGCCTCCTCAACCATCCTACTGG
CAAATGATCCGCATGGGCTACCAAGAGGTGGTGAGCGCGATCATTCGGCC
GCCAAGGGCCGAGTATTCACTTACCCACCTGGGGCCTCCTACCTTTGAAT
TTTGCGGACGGGCCTTCCAACGCAACGATTTTGTGGTCGTCAACGAACGG
GGGCTCCGCGTTCAATGCTCACAGTGGGAGCCTGTGGAATATCCCCTGGA
AAAAGATGAGGGCCACGGAGGCGCGGGAAAGGAAGGCACGTCAGGCCAGG
CCCGCGCGCAGAGAGGACCTCTTCCGTGCGTTGTGTACATGCACGGGAAC
AGCTCCGCGCGTGTAGAAGCTCTGCCTCAGCTTTCTCTCTGCCTTTCACT
GGGAATTACTCTAGTGGCGCTGGACTTTGCGGGCTCCGGGCGCTCGGACG
GGGAGTTCGTTAGTCTCGGCTACTTCGAGAAAGACGATCTGAAGGCTGTC
GTCGAGCATCTCCGAAGGTCAGGCCGCGTCTCGCGCATCGTGCTGTGGGG
TCGATCGATGGGCGCTGTTACCGCATTGATGCATGGCGAGCGCGACCCCT
CTTTGGCAGCCATGATCCTTGACTCGCCCTTCGCAGATTTTTTGCAGTTG
GCGGACGAGGTAGTGGAGAAGGGCCGGGAGCACGGGGTCCACGTGCCGCG
GCTGGTAACGCGCCTTGCCCTGCGCTTCATCAAGTCCTCCGTGCAAAGCA
AGGCTAATTTCAACATCCATAGCCTGGCTCCCATAGCACAGGCGCCTGCT
TGCTACATGCCTGCCCTCTTCGTGGCGGGCCGCGACGACGACTTCATCGA
CCCCTCGCACGCGCGGCGCCTGCACGACGCGTACGGGGGGGATAAGAACA
TCTTGATAGTGGAGGGCGACCACAACTCGATGCGTCCTCGTTTTTTGTAT
GACTCTATCTCCATTTTCCTTCAGCAAACATTAGAGCTGGAGGAAGAGCT
CATCTTGCCGGGGGCCTCCACCTGGATCAGCTTTCCTCCCTGGGCGCAAG
TCGTGGTGGACGGGGACGCGGTTTACTGCGACGAGGAAGGCGAAGATTCG
GAAGAGGGCGGGTACGGTAGTGACAGAGGGAGGACCTCGAACCGGTGGGA
GGAGGGCTTTGTCTTTGATGAGCTAGGTCACGTGCCTGCACCGATCAGGG
CGAGGGGGGGCGGAGGCCTCGTAAGGGAGGACGGGATGCTCCTCGAGAGC
AGCTCCATGCAGCAATTGCCGACAGGTATGACTCAAGCTCGGCAACGGGA
GATCCAGCACGCGGTGCATAATCTTTTGGGAGGAAGTCGAGACGGAGAGA
GGAGATGCAAATCGGAAAAGAGAGGCGGCGTTGGCCAAAGTTCGGAGCCT
AAACCGTCGGGCACAGGTATAGAGGAGTGGTCATGCGCGCTGTGCACGTT
GATAAACGACTGTGAATTGAGTCATTGCGACGCGTGTGGAGCTGTAAGAC
CGAGGCCAGGAGGTAGCCCACCAAGTCGGACGGGAGAAATCAGAAGCATA
TCGCCTTGTCCGCTTCCTGCCTCTCCGTCCATGCCCTCTCTCATGACGGC
TCAGCCCGAGAGAAATGGAGTCATGACCGAACATTTGAATGGAGGGACGA
CTGCAACTCACACAAACGATTGTACGGTAGAGAAGGATGTTTTGTGAAAA
AAAGGGGATTTAGGGTCCTCACGATGAGAAAGAGGATATTCGTTGTACAG
TTGTGTGCAAGAAAGGAACGTCGGGTCAGATCGGCGCAGGAGTCGGTGAA
ACTTCACCTACCTTTGGGTCGACCTCTCACGAAGCGGTCGAAGCGATCTT
TTATTCAAGGTCTCCGAAAGATCACCCCAGTTGGTCTGTATACCCCATAT
TGACAAAAGTAGACGGCAAGAATAGATGTCTCAAGTAGCAATTTTTCATA
TCATGTTGTCAATTTTTTCCTTTGAAAGAAACGACGGCGGTCGGCCTCGA
GTGCTCCCGAA

protein sequence of rna5238

>rna5238-protein ID=rna5238-protein|Name=rna5238|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVA
AMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNH
MKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTA
INVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR

mRNA from alignment at CM002465.1:501078..502800-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5238 ID=rna5238|Name=rna5238|organism=Nannochloropsis gaditana|type=mRNA|length=1723bp|location=Sequence derived from alignment at CM002465.1:501078..502800- (Nannochloropsis gaditana)
GGAGGCCAGATAACAGAAAACAGGTAGAGCCGCAGCTGAAGGTGGAGGGA
GGCCATTAGTATTCTTCAATGTGCCACCACACGGTTGATCATATCGATTG
ACACGACATACATACATATATATAACACTGATATCGCATCGGAAAGCCGA
CAACGATTTGTTCCCGAGAGGTAGTGATCTCTCCAATAATTTCCCCCAGC
ATCGTAAGAGCAAGATGTGTCCGAACCCGATGATACAAGTTCAAGTTGCG
CAGGACCCCACCACACTAACGCGATGGACTGTCCTAGTCTGCACAGCGCA
CGTTAGTTTGGCTCCGGAGATTGTGATGGCTAGAAAAGATTTTTTTCGGT
GCCATAATTTGATGCGACCTTTCAAAGGGAACGAGCAGAAGACGAGGCGA
GTGGGCTCATCATCCACATGCACTACTTCGCTGTCCTCATCTTGTTGAAT
GTCATTTGCTACATGAAAACTTCTGACTGTCACATACTCAGGCCCAGTTT
TTCATGTGTTTAAACGAAAGTCTAGTCAATGATGCAGCCGCTGCACACAC
ACGTATACTATCCGAGGTCGCACATGAAGCAATCCAAGTACATATCTGTA
TATCGCACTAAATTAACACCTTGCGGACAGGAGACAACATGCGGGTATTG
ACTTTCTGCCTTCTTGCCGCCCCTGCGGCATGCTTCTTGACGCCGTTGGC
CCCAAAATTAAGCAATACAGCTCTCAAGGCTGCCCAAGCCGATAACGATG
TAAGCAGAAGTCGCGGGCATACGGGAAACATGACAAACAACTTTTATATC
TCACTCCTCCCCTGACCGTCTGGTATATCACTCAGGTTTTTAGTCGTTCC
GATTTCATGACTTCTGGCGTAGCCGCTATGGCTGGCCTCAGCCTTGTGCT
GCCAGCCCTGGCTGCGGAAGAGGGCGGCGTGCCAACTGCTGCGCCCGTGG
ATCTGGGCGTCCCGCCCGTCAACTTCGATCTCTCCAAAGAGTACTACAAG
GACGCCGCTCAGGTGGTCAATCACATGAAGTAAGCAGCCGATACTGTTCT
CGAGGTCAAAAGAAGCTTGCATGCGCATAGCTCTAAGTGGTATTATCGTC
CTTTCGCTTTTAATTCGATCTCAACTGTATGATATTTGCAGAAGGTCGAA
AATTTACTCACAGCGCGTGACTGTACAACGAATCTCCGACGGTCCGCGAT
CTCTTTAATTTGAAGCCTTCAACAATTTTAAAGGCTCTAACGTAGCTTTT
TTATACTTTTCCGTCGAAGGTATGCAACGTTTATGAACAGGGACACTCCT
AACTACGAGAACATCGCCAAGTCGGTCAAGAATGAGATGACGGACTTCGT
CTCTTACTACCGCAGGTTTAACAACGTCGCGGGCAAGCCATCCTTCTCGA
CGCTGTACACGGCTATTAATGTTATGGCTGGGCATTACGCTTCCTACGGG
CCTAAGTTTCCCATTCCTGAAAAGCGCCGTAAGCGCCTGCAGCAGGAGTT
CACTGAGATCGATCGAAACATCAAGCGAAACCGATAAACGGTACGACAGC
TTCATTCGGAGGTCCTGTGTATGTGCCACCACTTTATTCGATCAAAGGTA
TCAGATTTAACAGTTAGCGTTTCACAAGGCGAGAAGCAACCAACACGTTC
AACGTTCGGGAGCACTCGAGGCCGACCGCCGTCGTTTCTTTCAAAGGAAA
AAATTGACAACATGATATGAAAA

Coding sequence (CDS) from alignment at CM002465.1:501078..502800-

>rna5238 ID=rna5238|Name=rna5238|organism=Nannochloropsis gaditana|type=CDS|length=1719bp|location=Sequence derived from alignment at CM002465.1:501078..502800- (Nannochloropsis gaditana)
GTATGCAACGTTTATGAACAGGGACACTCCTAACTACGAGAACATCGCCA
AGTCGGTCAAGAATGAGATGACGGACTTCGTCTCTTACTACCGCAGGTTT
AACAACGTCGCGGGCAAGCCATCCTTCTCGACGCTGTACACGGCTATTAA
TGTTATGGCTGGGCATTACGCTTCCTACGGGCCTAAGTTTCCCATTCCTG
AAAAGCGCCGTAAGCGCCTGCAGCAGGAGTTCACTGAGATCGATCGAAAC
ATCAAGCGAAACCGATAAGTTTTTAGTCGTTCCGATTTCATGACTTCTGG
CGTAGCCGCTATGGCTGGCCTCAGCCTTGTGCTGCCAGCCCTGGCTGCGG
AAGAGGGCGGCGTGCCAACTGCTGCGCCCGTGGATCTGGGCGTCCCGCCC
GTCAACTTCGATCTCTCCAAAGAGTACTACAAGGACGCCGCTCAGGTGGT
CAATCACATGAAATGCGGGTATTGACTTTCTGCCTTCTTGCCGCCCCTGC
GGCATGCTTCTTGACGCCGTTGGCCCCAAAATTAAGCAATACAGCTCTCA
AGGCTGCCCAAGCCGATAACGATGTATGCAACGTTTATGAACAGGGACAC
TCCTAACTACGAGAACATCGCCAAGTCGGTCAAGAATGAGATGACGGACT
TCGTCTCTTACTACCGCAGGTTTAACAACGTCGCGGGCAAGCCATCCTTC
TCGACGCTGTACACGGCTATTAATGTTATGGCTGGGCATTACGCTTCCTA
CGGGCCTAAGTTTCCCATTCCTGAAAAGCGCCGTAAGCGCCTGCAGCAGG
AGTTCACTGAGATCGATCGAAACATCAAGCGAAACCGATAAGTTTTTAGT
CGTTCCGATTTCATGACTTCTGGCGTAGCCGCTATGGCTGGCCTCAGCCT
TGTGCTGCCAGCCCTGGCTGCGGAAGAGGGCGGCGTGCCAACTGCTGCGC
CCGTGGATCTGGGCGTCCCGCCCGTCAACTTCGATCTCTCCAAAGAGTAC
TACAAGGACGCCGCTCAGGTGGTCAATCACATGAAATGCGGGTATTGACT
TTCTGCCTTCTTGCCGCCCCTGCGGCATGCTTCTTGACGCCGTTGGCCCC
AAAATTAAGCAATACAGCTCTCAAGGCTGCCCAAGCCGATAACGATGTAT
GCAACGTTTATGAACAGGGACACTCCTAACTACGAGAACATCGCCAAGTC
GGTCAAGAATGAGATGACGGACTTCGTCTCTTACTACCGCAGGTTTAACA
ACGTCGCGGGCAAGCCATCCTTCTCGACGCTGTACACGGCTATTAATGTT
ATGGCTGGGCATTACGCTTCCTACGGGCCTAAGTTTCCCATTCCTGAAAA
GCGCCGTAAGCGCCTGCAGCAGGAGTTCACTGAGATCGATCGAAACATCA
AGCGAAACCGATAAGTTTTTAGTCGTTCCGATTTCATGACTTCTGGCGTA
GCCGCTATGGCTGGCCTCAGCCTTGTGCTGCCAGCCCTGGCTGCGGAAGA
GGGCGGCGTGCCAACTGCTGCGCCCGTGGATCTGGGCGTCCCGCCCGTCA
ACTTCGATCTCTCCAAAGAGTACTACAAGGACGCCGCTCAGGTGGTCAAT
CACATGAAATGCGGGTATTGACTTTCTGCCTTCTTGCCGCCCCTGCGGCA
TGCTTCTTGACGCCGTTGGCCCCAAAATTAAGCAATACAGCTCTCAAGGC
TGCCCAAGCCGATAACGAT

Synonyms

Publications