EWM25384.1, cds5225 (CDS) Nannochloropsis gaditana

Overview
NameEWM25384.1
Unique Namecds5225
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:502052..502162 -
Alignment locationCM002465.1:501772..501965 -
Alignment locationCM002465.1:501264..501531 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25384.1
Productphotosystem ii 11 kd protein
Orig transcript idgnl|cribi|Naga_100005g25.6678.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:502052..502162 -
CM002465.1supercontigCM002465.1:501772..501965 -
CM002465.1supercontigCM002465.1:501264..501531 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0016043cellular component organization
GO:0006091generation of precursor metabolites and energy
GO:0010207photosystem II assembly
Vocabulary: INTERPRO
TermDefinition
IPR025585PSII_Pbs27
Homology
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|585107145|gb|EWM25384.1| (photosystem ii 11 kd protein [Nannochloropsis gaditana])

HSP 1 Score: 392.504 bits (1007), Expect = 2.528e-138
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
            MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR
Sbjct:    1 MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|223997122|ref|XP_002288234.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975342|gb|EED93670.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 150.599 bits (379), Expect = 5.402e-43
Identity = 78/156 (50.00%), Postives = 103/156 (66.03%), Query Frame = 0
Query:   35 DNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
             N+  +R  F+ +   A A   L  P LA  E  VP A   +   P  ++ L+  Y  DAA+V +HM  AT + + +   E+  K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EID+++KR+R
Sbjct:   21 SNEQSARRQFLQTASNAAASTILAFPTLAFAEIEVP-AQSTEYTFPS-DWGLTYNYEADAARVRSHMVTATGLAKGSERMEDFGKNLKKEMIDFVSYYRRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIDKSLKRSR 174          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|1210519294|dbj|GAX21878.1| (photosystem II Psb27 protein [Fistulifera solaris])

HSP 1 Score: 150.214 bits (378), Expect = 8.236e-43
Identity = 90/195 (46.15%), Postives = 119/195 (61.03%), Query Frame = 0
Query:    5 TFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTA-APVDLGVPP--------VNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
            T  LLAA  A          S +A    Q D    +R +F+ +   A AG +LVL         +PTA A  +L VPP         ++ L+ +Y +DAA+V  HM  AT + +  P+ E+  K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct:    5 TILLLAALTA----------STSAFTPLQTDT---ARRNFLQN--TATAGAALVL---------LPTAPAWAELEVPPQSTEYTFPTDWGLTFKYEEDAAKVRKHMLIATALAKGAPDMEDFGKNLKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVVAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRGR 175          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|676390399|ref|XP_009038478.1| (hypothetical protein AURANDRAFT_7494, partial [Aureococcus anophagefferens] >gi|323450849|gb|EGB06728.1| hypothetical protein AURANDRAFT_7494, partial [Aureococcus anophagefferens])

HSP 1 Score: 147.517 bits (371), Expect = 1.175e-42
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0
Query:   89 EYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
            +YY DA +VV HM+ AT +++  P+ E IA + K EM DFV++YRRF NV+GK SFSTLYTAINV+AGHY SYGPKFP+PEKRRKRL QE+ EI++NIK+ R
Sbjct:    1 DYYTDAQKVVAHMRLATSLDKGAPDMEKIALNTKKEMIDFVAFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|1210527500|dbj|GAX13785.1| (photosystem II Psb27 protein [Fistulifera solaris])

HSP 1 Score: 149.058 bits (375), Expect = 2.192e-42
Identity = 80/166 (48.19%), Postives = 108/166 (65.06%), Query Frame = 0
Query:   25 SNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
            S +A    Q D    +R +F+ +   A A L L+  A A  E  VP  +       P ++ L+ +Y +DAA+V  HM  AT + +  P+ E+  K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct:   15 STSAFTPLQTDT---ARRNFLQTTATAGAALVLLPSAPAIAELEVPPQS--TEYTFPTDWGLTFKYEEDAAKVRKHMLIATALAKGAPDMEDFGKNLKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVVAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRGR 175          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|219110911|ref|XP_002177207.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411742|gb|EEC51670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 146.747 bits (369), Expect = 1.976e-41
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 0
Query:   35 DNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
             + V +R +F+ +  AA+  ++  LP  A  E  VP    VD   P  ++ L+ +Y +DA +V  HM  AT M + +   E   K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct:   27 SSSVTARRNFLQTASAAV--IATTLPGAALAEIVVPPQT-VDYEFP-TDWGLTFKYEEDAVKVRQHMVVATGMAKGSEKMEEFGKNMKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVLAGHYTSYGFKYPLPEKRRKRLYQEYAEIEKSLKRGR 178          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|397570381|gb|EJK47273.1| (hypothetical protein THAOC_34020 [Thalassiosira oceanica])

HSP 1 Score: 145.206 bits (365), Expect = 7.631e-41
Identity = 79/155 (50.97%), Postives = 104/155 (67.10%), Query Frame = 0
Query:   41 RSDFMTSGVAAMAGLSLVLPALAAEEGGVPT-----AAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
            R    T+  AA++  ++VLP +A+ E  VP      A P D G       L+ +Y  DAA+V  HM  AT + + +   E+  K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KRNR
Sbjct:   28 RQFLQTASTAAVS--TVVLPNVASAEIVVPEQSKEYAFPSDWG-------LTYQYDTDAARVRAHMFTATGLAKGSERMEDFGKNLKKEMIDFVSYYRRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRNR 173          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|299471735|emb|CBN76956.1| (photosystem II 11 kDa protein [Ectocarpus siliculosus])

HSP 1 Score: 145.976 bits (367), Expect = 9.184e-41
Identity = 65/111 (58.56%), Postives = 87/111 (78.38%), Query Frame = 0
Query:   80 PPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
            PP ++ L+K+YY DA+++V HM+Y T M +  P   +IA + K EM +FVS YRR +N+ GK S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL QE+T+I+R IKR R
Sbjct:   96 PPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|873220964|emb|CEM34402.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 142.51 bits (358), Expect = 3.694e-39
Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 0
Query:   84 FDLSKEYYKD-AAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
            F +SK+ YKD A QV+NHMKYAT   +  P+ E I + +K EMTDF SYYRRFN V+G+ SFS +YTAINVMAGHY SYG K P+PEKRRKRL QEF  I+R++ R R
Sbjct:  123 FGISKKNYKDDARQVLNHMKYATLQVKGDPDMELINEGLKKEMTDFFSYYRRFNAVSGRTSFSNMYTAINVMAGHYQSYGYKVPLPEKRRKRLMQEFAMIERDLNRGR 230          
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|1072224471|gb|OEU09221.1| (hypothetical protein FRACYDRAFT_212328 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 140.584 bits (353), Expect = 6.936e-39
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 0
Query:   69 VPTAAPVDLGVP--------PVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
            +PT A   + VP        P ++ L+ +Y +DAA+V  HM  AT + +     E+  K +K EM DFVSYYRRF  +AGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE++EI++++KR+R
Sbjct:   54 MPTIASAVVEVPEQFTKYDYPTDWGLTFKYDEDAAKVRTHMVVATTLGKGADRMEDYGKEMKKEMVDFVSYYRRFPKIAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYSEIEKSLKRSR 183          
The following BLAST results are available for this feature:
BLAST of EWM25384.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107145|gb|EWM25384.1|2.528e-138100.00photosystem ii 11 kd protein [Nannochloropsis gadi... [more]
gi|223997122|ref|XP_002288234.1|5.402e-4350.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210519294|dbj|GAX21878.1|8.236e-4346.15photosystem II Psb27 protein [Fistulifera solaris][more]
gi|676390399|ref|XP_009038478.1|1.175e-4264.71hypothetical protein AURANDRAFT_7494, partial [Aur... [more]
gi|1210527500|dbj|GAX13785.1|2.192e-4248.19photosystem II Psb27 protein [Fistulifera solaris][more]
gi|219110911|ref|XP_002177207.1|1.976e-4149.36predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397570381|gb|EJK47273.1|7.631e-4150.97hypothetical protein THAOC_34020 [Thalassiosira oc... [more]
gi|299471735|emb|CBN76956.1|9.184e-4158.56photosystem II 11 kDa protein [Ectocarpus siliculo... [more]
gi|873220964|emb|CEM34402.1|3.694e-3962.96unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072224471|gb|OEU09221.1|6.936e-3952.31hypothetical protein FRACYDRAFT_212328 [Fragilario... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5238rna5238Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications