EWM25384.1, cds5225 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|585107145|gb|EWM25384.1| (photosystem ii 11 kd protein [Nannochloropsis gaditana]) HSP 1 Score: 392.504 bits (1007), Expect = 2.528e-138 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query: 1 MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR
Sbjct: 1 MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|223997122|ref|XP_002288234.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975342|gb|EED93670.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 150.599 bits (379), Expect = 5.402e-43 Identity = 78/156 (50.00%), Postives = 103/156 (66.03%), Query Frame = 0
Query: 35 DNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
N+ +R F+ + A A L P LA E VP A + P ++ L+ Y DAA+V +HM AT + + + E+ K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EID+++KR+R
Sbjct: 21 SNEQSARRQFLQTASNAAASTILAFPTLAFAEIEVP-AQSTEYTFPS-DWGLTYNYEADAARVRSHMVTATGLAKGSERMEDFGKNLKKEMIDFVSYYRRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIDKSLKRSR 174
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|1210519294|dbj|GAX21878.1| (photosystem II Psb27 protein [Fistulifera solaris]) HSP 1 Score: 150.214 bits (378), Expect = 8.236e-43 Identity = 90/195 (46.15%), Postives = 119/195 (61.03%), Query Frame = 0
Query: 5 TFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTA-APVDLGVPP--------VNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
T LLAA A S +A Q D +R +F+ + A AG +LVL +PTA A +L VPP ++ L+ +Y +DAA+V HM AT + + P+ E+ K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct: 5 TILLLAALTA----------STSAFTPLQTDT---ARRNFLQN--TATAGAALVL---------LPTAPAWAELEVPPQSTEYTFPTDWGLTFKYEEDAAKVRKHMLIATALAKGAPDMEDFGKNLKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVVAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRGR 175
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|676390399|ref|XP_009038478.1| (hypothetical protein AURANDRAFT_7494, partial [Aureococcus anophagefferens] >gi|323450849|gb|EGB06728.1| hypothetical protein AURANDRAFT_7494, partial [Aureococcus anophagefferens]) HSP 1 Score: 147.517 bits (371), Expect = 1.175e-42 Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0
Query: 89 EYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
+YY DA +VV HM+ AT +++ P+ E IA + K EM DFV++YRRF NV+GK SFSTLYTAINV+AGHY SYGPKFP+PEKRRKRL QE+ EI++NIK+ R
Sbjct: 1 DYYTDAQKVVAHMRLATSLDKGAPDMEKIALNTKKEMIDFVAFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|1210527500|dbj|GAX13785.1| (photosystem II Psb27 protein [Fistulifera solaris]) HSP 1 Score: 149.058 bits (375), Expect = 2.192e-42 Identity = 80/166 (48.19%), Postives = 108/166 (65.06%), Query Frame = 0
Query: 25 SNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
S +A Q D +R +F+ + A A L L+ A A E VP + P ++ L+ +Y +DAA+V HM AT + + P+ E+ K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct: 15 STSAFTPLQTDT---ARRNFLQTTATAGAALVLLPSAPAIAELEVPPQS--TEYTFPTDWGLTFKYEEDAAKVRKHMLIATALAKGAPDMEDFGKNLKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVVAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRGR 175
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|219110911|ref|XP_002177207.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411742|gb|EEC51670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 146.747 bits (369), Expect = 1.976e-41 Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 0
Query: 35 DNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
+ V +R +F+ + AA+ ++ LP A E VP VD P ++ L+ +Y +DA +V HM AT M + + E K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct: 27 SSSVTARRNFLQTASAAV--IATTLPGAALAEIVVPPQT-VDYEFP-TDWGLTFKYEEDAVKVRQHMVVATGMAKGSEKMEEFGKNMKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVLAGHYTSYGFKYPLPEKRRKRLYQEYAEIEKSLKRGR 178
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|397570381|gb|EJK47273.1| (hypothetical protein THAOC_34020 [Thalassiosira oceanica]) HSP 1 Score: 145.206 bits (365), Expect = 7.631e-41 Identity = 79/155 (50.97%), Postives = 104/155 (67.10%), Query Frame = 0
Query: 41 RSDFMTSGVAAMAGLSLVLPALAAEEGGVPT-----AAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
R T+ AA++ ++VLP +A+ E VP A P D G L+ +Y DAA+V HM AT + + + E+ K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KRNR
Sbjct: 28 RQFLQTASTAAVS--TVVLPNVASAEIVVPEQSKEYAFPSDWG-------LTYQYDTDAARVRAHMFTATGLAKGSERMEDFGKNLKKEMIDFVSYYRRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRNR 173
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|299471735|emb|CBN76956.1| (photosystem II 11 kDa protein [Ectocarpus siliculosus]) HSP 1 Score: 145.976 bits (367), Expect = 9.184e-41 Identity = 65/111 (58.56%), Postives = 87/111 (78.38%), Query Frame = 0
Query: 80 PPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
PP ++ L+K+YY DA+++V HM+Y T M + P +IA + K EM +FVS YRR +N+ GK S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL QE+T+I+R IKR R
Sbjct: 96 PPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|873220964|emb|CEM34402.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 142.51 bits (358), Expect = 3.694e-39 Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 0
Query: 84 FDLSKEYYKD-AAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
F +SK+ YKD A QV+NHMKYAT + P+ E I + +K EMTDF SYYRRFN V+G+ SFS +YTAINVMAGHY SYG K P+PEKRRKRL QEF I+R++ R R
Sbjct: 123 FGISKKNYKDDARQVLNHMKYATLQVKGDPDMELINEGLKKEMTDFFSYYRRFNAVSGRTSFSNMYTAINVMAGHYQSYGYKVPLPEKRRKRLMQEFAMIERDLNRGR 230
BLAST of EWM25384.1 vs. NCBI_GenBank
Match: gi|1072224471|gb|OEU09221.1| (hypothetical protein FRACYDRAFT_212328 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 140.584 bits (353), Expect = 6.936e-39 Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 0
Query: 69 VPTAAPVDLGVP--------PVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
+PT A + VP P ++ L+ +Y +DAA+V HM AT + + E+ K +K EM DFVSYYRRF +AGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE++EI++++KR+R
Sbjct: 54 MPTIASAVVEVPEQFTKYDYPTDWGLTFKYDEDAAKVRTHMVVATTLGKGADRMEDYGKEMKKEMVDFVSYYRRFPKIAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYSEIEKSLKRSR 183 The following BLAST results are available for this feature:
BLAST of EWM25384.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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