rna5234, rna5234 (mRNA) Nannochloropsis gaditana

Overview
Namerna5234
Unique Namerna5234
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2543
Alignment locationCM002465.1:490614..492525 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g21.6654.mrna
Orig protein idgnl|cribi|Naga_100005g21.6654
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:490614..492525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g21gene5054Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5234rna5234-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25360.1cds5221Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5234 ID=rna5234|Name=rna5234|organism=Nannochloropsis gaditana|type=mRNA|length=2543bp
CGAGCTCCTTCCTTCTTTCTCCGATTCAAAATCATACCTTCTTGTCAATC
TGGTACTCAGTTCGCGTGGGATCATGAGTTGTGGCCTTGGCACAAATTTG
CACGCTCGATGGCTCTTTTGAAGTAGTAAGTTTTGTTCCCGCCCCATATT
TTTATTATACCCACGAATCAGAATCTCTTCCAGTCTACAGCAACCGAGTT
TAAAAGCATGTTCCGCAAGATGACACTGTTCATGGCTGTCGCGGCCGCAT
CCTTGGCCTTTGCCGGTGCCGATGCCTCTGTTTCGACAGAGCCGGAGACG
CGCACCCCCAAGCCGATGCTCAAAGTGTTGTGCATGCCGAAGTCTGTCGC
TCTTAACACACCTTTCTACGTGAACCTTGAATACGCGGCTCCTTTCTCTC
GACCCATGGCCATCCACGTGGACCTCCTCAACGCGGACACGAACGAGTGG
CAGGCAGGCGATGTTGTCAAGGTGACCGGCGCCGCTGGGAAGGTGACCTC
CCGCATCGTGGTGCCTCAGGACGCTAAGACCCCGTTCAAATGGTTCGCCT
ACATTGCGCCTCAGGACGAGAACTGGCCCAACATGCTGGCCACTACTACC
TTCACGGCGGACTTGGGCGCCAAGGTGATGGCACCGTGCGCCCCGCTGCG
GAACACGGCACGCAGCCCCAGCAAGCCCGTTGACTTCGACTACGTGCTGG
TGAAGGACTACCCTTCGGCTTTCCATGCGGGGGCGAAGACGCCTGTCGAG
GTGCAGTACAACCTGATGCCTGACCAGCCTTCTATGTACGTGTCGGCCAC
GCTGTTGCGCGCGAGCGACAACACTGTGGTGGCGTCGGCTCAGGAGAAGG
CGAAGGAAGGCGAGCACGACCTGACCATGTTCATGGACGTGCCCGCGGAC
GCCCTCATGAGCGAGCCTGTGTACCTGATGGCGGTTCTCAAGCCAGCGGG
CAAGGCTTTCAGCGAGCGCGTGGCGGAAGACCGCGTCTGGGCGACGTCCG
TGTGGCAGCAACGCCGCATGCTCCGTGCCAGTGAGGCGGACAACTAAAAT
GCCTTATTTGGGGAGCCTTGCTTGGTACAACCTGTAATTAGTCGACAAAG
ATTTTATTATAAAGGAAGAACCCAACAATTGCAGCGCACCTTTACGATGT
CCCGCTGCCAGTACTACATGGAAATGTGTCCGGTTTCACGGGAGTGACTC
AGAAAATGCACGTGTGATCCTGCTTTGCGCCCTTAAGTTGATGATTAGCG
AAGGAAGAGACTCTTGTGAGGCAGAGGATTGAGTTCTTCAATCTCGCCCG
GATCTTTTACTCCTTGTCACTTCATTCGGCGTCGCAAGCCCTTATCAAAG
AGGAAAAGAGAAATGAAAAAGAAGACGCCCACTCAGTAGCAAACTCTCTT
CGATTGACAAAGAACTTAGACGGAAATGGACAATTATACAGCGAAAGAAG
AAAAAAAAATCGGCAAGCATAAACAAGGGCGTAACCCACGCATATCTGCG
CTGGGGATCGGACAGGTCATCTACCTGTGTCAATTGTAGTGCTTTACATC
TGGATTTTGGATCGTTGTACAACCACATGAGGAGCTGCATGCGGCAAACC
CCTCAATTACTTTCATGCTTTCGGTGATCCAGCGTGAGGCTTGTAAACTT
GTAAGCCCTACTTCGGCTTCTTGGGCGAGATGTTCATTAAACCTCCACCG
CGATGTATATGTATACTTTAATCCTGCCTCAAGTATTGTTGCCGCCCAGA
GGATATATACCATCAATATCACTCCCTTTGAAGTGTACTTCCTCGACGAG
CATCTGCAATGCACCCGGACCGCCTTTCTGCCTTACACTTAATCGTTTGC
CGCTCTTTCCTACGATAGCGCCGGTTCTAAACCATTTAGTTTGTGTCGCT
TTTTATTTACGTCGTGTTGAAGGCGCGCGAGCCCCTCTCGCTCCTCTTCC
ACTGACCGACTCAATGCCTTTAATTCCGTCTCCTTCCGTGCTCTCGTCTC
CTCTTCCTGGCGAATTTTCTCGCGCGTTCTTTCCAGAGTACCTGCAGTAC
ATAGTTCAACGAGAAGCTGTAAATGATTCAAATACTTCGAGGATGGTAAA
ACTTCCTTCGAACGTGCACTCGCCTGTTAGCTTTTTGAGGGCTTCCTCCA
TCTCCTCCACTTCTGCCGATGCACTTTCCCCGGAGATGTAGGGCAGCAGC
TGGCTTTCCTGGTACGAATTTATCAATCCGTTTCCATCCATCTCGTTCTC
GTTGAGTAATGGCTCCTTCGATTTGCTCTTCGTAAAGCACAGATACTTTA
AAAGCATTTTCTACTAATGCGAGCGGAGAGGAAGATGAAACGACAGGACA
CCAAGGAAACATAAGAGAATATAGCACGCGAGAATTTGGGTGCCTCGAAG
GCAACATAGAAAAATGAAATGGTATATATATATATATATATATACATACA
TACATATAGGTGGACTGTTGCTCAATATTTTTTTTAAAAATATCCACTTA
CATCCACGATGTTGGCAACATGAAGCATGTCGCCGCTCTTTGC
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protein sequence of rna5234

>rna5234-protein ID=rna5234-protein|Name=rna5234|organism=Nannochloropsis gaditana|type=polypeptide|length=279bp
MFRKMTLFMAVAAASLAFAGADASVSTEPETRTPKPMLKVLCMPKSVALN
TPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRI
VVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNT
ARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLL
RASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKA
FSERVAEDRVWATSVWQQRRMLRASEADK
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mRNA from alignment at CM002465.1:490614..492525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5234 ID=rna5234|Name=rna5234|organism=Nannochloropsis gaditana|type=mRNA|length=1912bp|location=Sequence derived from alignment at CM002465.1:490614..492525+ (Nannochloropsis gaditana)
CAAAAAAATTGTTGTCACCACATGGTGTCATGTTCGCTGTTGTCATTGCT
CTTCCACTTGATTTTCTATGCAATTGCTCAGATGCGGCACATCTAAATGC
GAACATTATGCCCCCGTCGCTTTTTCAAAAGTTTCTGTGAGTCACTGTAG
TGTTGGCGAAAGTCAAACCACTCGTGAGACGCAGGGCCGTCTTCAAGCTG
GCGCCGAACAGAGCAGCGGCAGGGCTCACACGGATTTCTTTCAAAGACAT
TTTAATTTCCAAAAAATCAATTGGCTTTCAGCGCGTAAGGAAGCAGTCAT
TCATTTGTTTTGGTTTCTCATCGTGTTAGGAGGCAACTGGAGGGCGAGTT
GGCGAGGGCCCATCATGGCTGCTATTTTCGCTCTCCTTGAAGCTCTAGGC
AGAATTCTTGAATGAATACCATACTTTAAACGACGccacccctcccgctt
cctccctacaTGTATACACCACACAGTCTATCATTTCTAACAACAGACAA
ATGTTTCGCAAGATGACACTGTTCATGGCTGTCGCGGCCGCATCCTTGGC
CTTTGCCGGTGCCGATGCCTCTGTTTCGACAGAGCCGGAGACGCGCACCC
CCAAGCCGATGCTCAAAGTGTTGTGCATGCCGAAGTCTGTCGCTCTTAAC
ACACCTTTCTACGTGAACCTTGAATACGCGGCTCCTTTCTCTCGACCCAT
GGCCATCCACGTGGACCTCCTCAACGCGGACACGAACGAGTGGCAGGCAG
GCGATGTTGTCAAGGTGACCGGCGCCGCTGGGAAGGTGACCTCCCGCATC
GTGGTGCCTCAGGACGCTAAGACCCCGTTCAAATGGTTCGCCTACATTGC
GCCTCAGGACGAGAACTGGCCCAACATGCTGGCCACTACTACCTTCACGG
CGGACTTGGGTGCCAAGGTGATGGCACCGTGCGCCCCGCTGCGAAACACG
GCACGCAGCCCCAGCAAGCCCGTTGACTTCGACTACGTGCTGGTGAAGGA
CTACCCTTCGGCTTTCCATGCGGGGGCGAAGACGCCTGTCGAGGTGCAGT
ACAACCTGATGCCTGACCAGCCTTCTATGTACGTGTCGGCCACGCTGTTG
CGCGCGAGCGACAACACTGTGGTGGCGTCGGCtcaggagaaggcgaagga
aggcgagcacGACCTGACCATGTTCATGGACGTGCCCGCGGACGCCCTCA
TGAGCGAGCCTGTGTACCTGATGGCGGTTCTCAAGCCAGCGGGCAAGGCT
TTCAGCGAGcgcgtggcggaggaccgCGTCTGGGCGACGTCCGTGTGGCA
GCAACGCCGCATGCTCCGTGCCAGTGAGGCGGACAAGTAGCTTGTTGGTC
GCCACCGACTTGAAGCGGTATAAGAGATGTATTAAAGAAGCGCATCGGCG
TCGAGGGAGTCTGCATTTTTCTCGGTGGAATTAACTTCGGGTTAATTAAC
CACGGTGGATCGGGTGAAGCAATGATATGGTGTGACTGGAAAGATCATTG
ATAGAACTACTTTCCATATTTTCTACTGGTTGTGTGTAGTCAATTGCCAT
AATCGGAAACGCCGCCCTCgcgcaaggaagaaaaagaatgcAGCTGAAGT
GTTAGAACCTACTTTTTCTTTGTTCGGTCAGTGGGAGTATGAAGTTTGTT
CCATGGCCCATGAGCGGCGAACTTCCGCCGCATCTACGAGTTGTAGGtgt
agggagggagttgCTGGACATGCACGGGACCAGGTCTTGCCGAGGCAGCT
ATCTCGCATTTAAGTGAATGGCAATTATATCTTGAATTCGTGAATGTGAA
AGTTGTGGATTTTGGTAAAAACACACAAGTTTATGCAATTTGCGCTTGGC
TGTGTCGTGTAAACGTTGTCTTTTGTGACGTGAGGAGCCCCCGCCACGAC
ACGAGGGCCTGG
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Coding sequence (CDS) from alignment at CM002465.1:490614..492525+

>rna5234 ID=rna5234|Name=rna5234|organism=Nannochloropsis gaditana|type=CDS|length=840bp|location=Sequence derived from alignment at CM002465.1:490614..492525+ (Nannochloropsis gaditana)
ATGTTTCGCAAGATGACACTGTTCATGGCTGTCGCGGCCGCATCCTTGGC
CTTTGCCGGTGCCGATGCCTCTGTTTCGACAGAGCCGGAGACGCGCACCC
CCAAGCCGATGCTCAAAGTGTTGTGCATGCCGAAGTCTGTCGCTCTTAAC
ACACCTTTCTACGTGAACCTTGAATACGCGGCTCCTTTCTCTCGACCCAT
GGCCATCCACGTGGACCTCCTCAACGCGGACACGAACGAGTGGCAGGCAG
GCGATGTTGTCAAGGTGACCGGCGCCGCTGGGAAGGTGACCTCCCGCATC
GTGGTGCCTCAGGACGCTAAGACCCCGTTCAAATGGTTCGCCTACATTGC
GCCTCAGGACGAGAACTGGCCCAACATGCTGGCCACTACTACCTTCACGG
CGGACTTGGGTGCCAAGGTGATGGCACCGTGCGCCCCGCTGCGAAACACG
GCACGCAGCCCCAGCAAGCCCGTTGACTTCGACTACGTGCTGGTGAAGGA
CTACCCTTCGGCTTTCCATGCGGGGGCGAAGACGCCTGTCGAGGTGCAGT
ACAACCTGATGCCTGACCAGCCTTCTATGTACGTGTCGGCCACGCTGTTG
CGCGCGAGCGACAACACTGTGGTGGCGTCGGCtcaggagaaggcgaagga
aggcgagcacGACCTGACCATGTTCATGGACGTGCCCGCGGACGCCCTCA
TGAGCGAGCCTGTGTACCTGATGGCGGTTCTCAAGCCAGCGGGCAAGGCT
TTCAGCGAGcgcgtggcggaggaccgCGTCTGGGCGACGTCCGTGTGGCA
GCAACGCCGCATGCTCCGTGCCAGTGAGGCGGACAAGTAG
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Synonyms
Publications