EWM25360.1, cds5221 (CDS) Nannochloropsis gaditana

Overview
NameEWM25360.1
Unique Namecds5221
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:491114..491953 +

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Properties
Property NameValue
Protein idEWM25360.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g21.6654.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:491114..491953 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25360.1 vs. NCBI_GenBank
Match: gi|585107121|gb|EWM25360.1| (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana])

HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0
Query:    1 MFRKMTLFMAVAAASLAFAGADASVSTEPETRTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRMLRASEADK 279
            MFRKMTLFMAVAAASLAFAGADASVSTEPETRTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRMLRASEADK
Sbjct:    1 MFRKMTLFMAVAAASLAFAGADASVSTEPETRTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRMLRASEADK 279          
BLAST of EWM25360.1 vs. NCBI_GenBank
Match: gi|585107214|gb|EWM25453.1| (hypothetical protein Naga_100005g20 [Nannochloropsis gaditana])

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 278/279 (99.64%), Postives = 278/279 (99.64%), Query Frame = 0
Query:    1 MFRKMTLFMAVAAASLAFAGADASVSTEPETRTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRMLRASEADK 279
            MFRKMTLFMAVAAASLAFAGADASVSTEPETRTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRMLRASEAD 
Sbjct:    1 MFRKMTLFMAVAAASLAFAGADASVSTEPETRTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRMLRASEADN 279          
BLAST of EWM25360.1 vs. NCBI_GenBank
Match: gi|585112805|gb|EWM30149.1| (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 136.346 bits (342), Expect = 1.026e-33
Identity = 80/252 (31.75%), Postives = 139/252 (55.16%), Query Frame = 0
Query:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQ-DAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAED-------------RVWATSVWQQRRM 271
            ++V+C P++VA+  PF VN++Y +   RP+ +HVD+LNA T  + AG   +    AG+V+  I +P    + PF W  ++ P+ E +PNMLA T F A L   V   CAP ++    P +  +     D+V ++  P+    G++  V+V+YNL+    ++ +S  L+R   NT+++S  + A  G++ +++ + VP DA   E VY++  L P G ++ +R+AED             +V   + W +RR+
Sbjct:  157 IEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLVGAAKAI-LSVALMRKGPNTIISSFADLAAPGQNKVSLPLPVPYDA-PKEAVYIVVTLTPDGASWEDRLAEDQLLGANQGESVQAKVRCENCWVRRRL 406          
BLAST of EWM25360.1 vs. NCBI_GenBank
Match: gi|585106376|gb|EWM24789.1| (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 82.4185 bits (202), Expect = 2.515e-14
Identity = 58/198 (29.29%), Postives = 89/198 (44.95%), Query Frame = 0
Query:    8 FMAVAAASLAFAGADASVSTEPET-----RTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRI-VVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATL 199
            F+  A  S       A V+  PE      RTP   + VLC P++V    PF VNL +     RPM +    L+ DT E+  G  V V    G V+ R  + P     P K+ A+++P+ E  PN +  T     LG + + PC P  +   + +     ++V + D P     G K  + + YNL+P+      +AT+
Sbjct:  117 FLTPAGGSF-----QARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATV 309          
The following BLAST results are available for this feature:
BLAST of EWM25360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107121|gb|EWM25360.1|0.000e+0100.00hypothetical protein Naga_100005g21 [Nannochlorops... [more]
gi|585107214|gb|EWM25453.1|0.000e+099.64hypothetical protein Naga_100005g20 [Nannochlorops... [more]
gi|585112805|gb|EWM30149.1|1.026e-3331.75hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
gi|585106376|gb|EWM24789.1|2.515e-1429.29hypothetical protein Naga_100912g2, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5234rna5234Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications