rna5233, rna5233 (mRNA) Nannochloropsis gaditana

Overview
Namerna5233
Unique Namerna5233
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1204
Alignment locationCM002465.1:487807..490512 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g20.6747.mrna
Orig protein idgnl|cribi|Naga_100005g20.6747
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:487807..490512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g20gene5053Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25453.1cds5220Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5233rna5233-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5233 ID=rna5233|Name=rna5233|organism=Nannochloropsis gaditana|type=mRNA|length=1204bp
AGTGAAGGGTGCCCGATGGGGTGTATCGCGAAGGAAGCGAAGTTTGTTTT
CCTTGGGGCTTCAGTGCATGTAAGAGTCTACGTTGTGGACCATGAAAGGG
GCCTCTCGAATTGAATGCCGACTAGCACGGATGGAGGACGTACATACCCT
TGACATTGTCCACCGTTTTCCCTTTCACATTCGGGAAAATTTTGTCTGAA
AAGTTGTAAAGGCGTTTACAACATCTTACTTGAAGTCTCTAGGGGTCGAA
CGGATGTATCTATCTATTTTTGTTACAGTGCAAGTCAGGAGCCTACGTGC
ACGCGCATTTTTTAGGAAATCGCGTACCATACACAAGCTAGCGCACGACG
ACGACCAATAACATGCATCCAACTAGTGAACTTCCTGGTAACATAAAAAC
ATAAACTGATGAAAGTCTTATAATTCCTCTCGTCTGGTCATTATAGTGCA
GTAGTCATGTTGGGCCGCCTATCGTTCCTTGCGATAGCGTCTACAATATT
GATGCTGGCCGTGCAGATAACTGGATTCGTGGGTCTACTACCAGGGGCAT
GCAAGAGAGCGGCCGATATTCAGAATTCAATGTATCAATGGCCATTTGTC
AGAACGGGCACTGAAGGACCAACACGGAGGGAAGACAGAACTTTTTGGTC
TTCATTAGCATTGTGTGCGAAGAAGAATAAGGAATCTGATGTAATCGAGG
TGGACGGCATCGTGAAGGAATCGCTTCCGAATGCAAAATTTCGTGTAGAA
CTTGTGGCAACTAAGGCTGTTATTGTCTGCTCCACGTCCGGAAAAATGCG
CAAGAATTTCGTGCGCGTTCTTGTCGGAGATCCCGTCAAGGTGGAGCTTT
CCCCTTACGATTTGACCCGTGGCCGTATCACATATCGCTCGCGAGGCCCT
GGAAAGGATCGTTCTCCCTCGCCTCCACCAGACTCGACCCCTCCTCCAAC
GGCGTAGCCCCAGGAGTGTAGAGAAGAGTGTTCACCCTTGGAGGAGGTGC
CAAGTAAGACGGACACGAGGCCATTCCGTCTCTTTCAAATCCAGAACTAC
AAGCGTGGCCGCGATTCCAAGCTCTCAGGCCTGACCTTTCTTTTCCAGAT
CCTCCTCTCCGATCTCCTCGTTATGTTTTCTTGTGGTCGTGCGATTATAA
TTTTCTTCCACATGTCTCTTTAAAGAAAAAGCGAAGACAAATTAAATATT
TCGC
back to top

protein sequence of rna5233

>rna5233-protein ID=rna5233-protein|Name=rna5233|organism=Nannochloropsis gaditana|type=polypeptide|length=279bp
MFRKMTLFMAVAAASLAFAGADASVSTEPETRTPKPMLKVLCMPKSVALN
TPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRI
VVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNT
ARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLL
RASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKA
FSERVAEDRVWATSVWQQRRMLRASEADN
back to top

mRNA from alignment at CM002465.1:487807..490512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5233 ID=rna5233|Name=rna5233|organism=Nannochloropsis gaditana|type=mRNA|length=2706bp|location=Sequence derived from alignment at CM002465.1:487807..490512- (Nannochloropsis gaditana)
CGAGCTCCTTCCTTCTTTCTCCGATTCAAAATCATACCTTCTTGTCAATC
TGGTACTCAGTTCGCGTGGGATCATGAGTTGTGGCCTTGGCACAAATTTG
CACGCTCGATGGCTCTTTTGAAGTAGTAAGTTTTGTTCCCGCCCCATATT
TTTATTATACCCACGAATCAGAATCTCTTCCAGTCTACAGCAACCGAGTT
TAAAAGCATGTTCCGCAAGATGACACTGTTCATGGCTGTCGCGGCCGCAT
CCTTGGCCTTTGCCGGTGCCGATGCCTCTGTTTCGACAGAGCCGGAGACG
CGCACCCCCAAGCCGATGCTCAAAGTGTTGTGCATGCCGAAGTCTGTCGC
TCTTAACACACCTTTCTACGTGAACCTTGAATACGCGGCTCCTTTCTCTC
GACCCATGGCCATCCACGTGGACCTCCTCAACGCGGACACGAACGAGTGG
CAGGCAGGCGATGTTGTCAAGGTGACCGGCGCCGCTGGGAAGGTGACCTC
CCGCATCGTGGTGCCTCAGGACGCTAAGACCCCGTTCAAATGGTTCGCCT
ACATTGCGCCTCAGGACGAGAACTGGCCCAACATGCTGGCCACTACTACC
TTCACGGCGGACTTGGGCGCCAAGGTGATGGCACCGTGCGCCCCGCTGCG
GAACACGGCACGCAGCCCCAGCAAGCCCGTTGACTTCGACTACGTGCTGG
TGAAGGACTACCCTTCGGCTTTCCATGCGGGGGCGAAGACGCCTGTCGAG
GTGCAGTACAACCTGATGCCTGACCAGCCTTCTATGTACGTGTCGGCCAC
GCTGTTGCGCGCGAGCGACAACACTGTGGTGGCGTCGGCTCAGGAGAAGG
CGAAGGAAGGCGAGCACGACCTGACCATGTTCATGGACGTGCCCGCGGAC
GCCCTCATGAGCGAGCCTGTGTACCTGATGGCGGTTCTCAAGCCAGCGGG
CAAGGCTTTCAGCGAGCGCGTGGCGGAAGACCGCGTCTGGGCGACGTCCG
TGTGGCAGCAACGCCGCATGCTCCGTGCCAGTGAGGCGGACAACTAAAAT
GCCTTATTTGGGGAGCCTTGCTTGGTACAACCTGTAATTAGTCGACAAAG
ATTTTATTATAAAGGAAGAACCCAACAATTGCAGCGCACCTTTACGATGT
CCCGCTGCCAGTACTACATGGAAATGTGTCCGGTTTCACGGGAGTGACTC
AGAAAATGCACGTGTGATCCTGCTTTGCGCCCTTAAGTTGATGATTAGCG
AAGGAAGAGACTCTTGTGAGGCAGAGGATTGAGTTCTTCAATCTCGCCCG
GATCTTTTACTCCTTGTCACTTCATTCGGCGTCGCAAGCCCTTATCAAAG
AGGAAAAGAGAAATGAAAAAGAAGACGCCCACTCAGTAGCAAACTCTCTT
CGATTGACAAAGAACTTAGACGGAAATGGACAATTATACAGCGAAAGAAG
AAAAAAAAATCGGCAAGCATAAACAAGGGCGTAACCCACGCATATCTGCG
CTGGGGATCGGACAGGTCATCTACCTGTGTCAATTGTAGTGCTTTACATC
TGGATTTTGGATCGTTGTACAACCACATGAGGAGCTGCATGCGGCAAACC
CCTCAATTACTTTCATGCTTTCGGTGATCCAGCGTGAGGCTTGTAAACTT
GTAAGCCCTACTTCGGCTTCTTGGGCGAGATGTTCATTAAACCTCCACCG
CGATGTATATGTATACTTTAATCCTGCCTCAAGTATTGTTGCCGCCCAGA
GGATATATACCATCAATATCACTCCCTTTGAAGTGTACTTCCTCGACGAG
CATCTGCAATGCACCCGGACCGCCTTTCTGCCTTACACTTAATCGTTTGC
CGCTCTTTCCTACGATAGCGCCGGTTCTAAACCATTTAGTTTGTGTCGCT
TTTTATTTACGTCGTGTTGAAGGCGCGCGAGCCCCTCTCGCTCCTCTTCC
ACTGACCGACTCAATGCCTTTAATTCCGTCTCCTTCCGTGCTCTCGTCTC
CTCTTCCTGGCGAATTTTCTCGCGCGTTCTTTCCAGAGTACCTGCAGTAC
ATAGTTCAACGAGAAGCTGTAAATGATTCAAATACTTCGAGGATGGTAAA
ACTTCCTTCGAACGTGCACTCGCCTGTTAGCTTTTTGAGGGCTTCCTCCA
TCTCCTCCACTTCTGCCGATGCACTTTCCCCGGAGATGTAGGGCAGCAGC
TGGCTTTCCTGGTACGAATTTATCAATCCGTTTCCATCCATCTCGTTCTC
GTTGAGTAATGGCTCCTTCGATTTGCTCTTCGTAAAGCACAGGTAAGCCT
GGTCGCCTATGAGAGTTTTACAAAGCATGCGGGCACGTTTGTGCGCGAAT
TCAGCATGGCTTTTAAACTGCTTTTCTAACTCTTGCATCTCTTGGCGGTG
TTGTTCTATGCTGCGCTCATTTTCCTTGTTGGTCACCTGTATATTCAACC
CGCAGATACTTTAAAAGCATTTTCTACTAATGCGAGCGGAGAGGAAGATG
AAACGACAGGACACCAAGGAAACATAAGAGAATATAGCACGCGAGAATTT
GGGTGCCTCGAAGGCAACATAGAAAAATGAAATGGTATATATATATATAT
ATATATACATACATACATATAGGTGGACTGTTGCTCAATATTTTTTTTAA
AAATATCCACTTACATCCACGATGTTGGCAACATGAAGCATGTCGCCGCT
CTTTGC
back to top

Coding sequence (CDS) from alignment at CM002465.1:487807..490512-

>rna5233 ID=rna5233|Name=rna5233|organism=Nannochloropsis gaditana|type=CDS|length=840bp|location=Sequence derived from alignment at CM002465.1:487807..490512- (Nannochloropsis gaditana)
ATGTTCCGCAAGATGACACTGTTCATGGCTGTCGCGGCCGCATCCTTGGC
CTTTGCCGGTGCCGATGCCTCTGTTTCGACAGAGCCGGAGACGCGCACCC
CCAAGCCGATGCTCAAAGTGTTGTGCATGCCGAAGTCTGTCGCTCTTAAC
ACACCTTTCTACGTGAACCTTGAATACGCGGCTCCTTTCTCTCGACCCAT
GGCCATCCACGTGGACCTCCTCAACGCGGACACGAACGAGTGGCAGGCAG
GCGATGTTGTCAAGGTGACCGGCGCCGCTGGGAAGGTGACCTCCCGCATC
GTGGTGCCTCAGGACGCTAAGACCCCGTTCAAATGGTTCGCCTACATTGC
GCCTCAGGACGAGAACTGGCCCAACATGCTGGCCACTACTACCTTCACGG
CGGACTTGGGCGCCAAGGTGATGGCACCGTGCGCCCCGCTGCGGAACACG
GCACGCAGCCCCAGCAAGCCCGTTGACTTCGACTACGTGCTGGTGAAGGA
CTACCCTTCGGCTTTCCATGCGGGGGCGAAGACGCCTGTCGAGGTGCAGT
ACAACCTGATGCCTGACCAGCCTTCTATGTACGTGTCGGCCACGCTGTTG
CGCGCGAGCGACAACACTGTGGTGGCGTCGGCTCAGGAGAAGGCGAAGGA
AGGCGAGCACGACCTGACCATGTTCATGGACGTGCCCGCGGACGCCCTCA
TGAGCGAGCCTGTGTACCTGATGGCGGTTCTCAAGCCAGCGGGCAAGGCT
TTCAGCGAGCGCGTGGCGGAAGACCGCGTCTGGGCGACGTCCGTGTGGCA
GCAACGCCGCATGCTCCGTGCCAGTGAGGCGGACAACTAA
back to top
Synonyms
Publications