|
|
Properties
| Property Name | Value |
|---|
| Product | translation initiation factor if-1 |
| Orig transcript id | gnl|cribi|Naga_100005g19.6756.mrna |
| Orig protein id | gnl|cribi|Naga_100005g19.6756 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:485732..487103 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5232 ID=rna5232|Name=rna5232|organism=Nannochloropsis gaditana|type=mRNA|length=900bp
ATGGCGAGCACCGAAGACAAGAGCATGAATGCAAAGGAGAGACGCTTGCT
TCGGCGGGCGCAGGAGAGGGCGAAAGCGGCGTCGGGCGCTTCTAGTATTC
CCGCAACAAGCAACCCGCCGGGGGTGGTCTTGTCGAAGAATGGAAAAAAG
AATGTGACTAGAAAACCTGAGACTAGCGAGGAACCCAATCCCCAGGTGGA
TACAGCTCCAAGCGCGCAAGACCCAGGAAGTTTGAACGCAAAGCAGCGGC
GCTTGCTGAAGCGTGCTCAGGAGAGAGCTGCAGGACAAGCAGGAAACAAC
ATCCCACCTAAACTGCTTTCGAATAATGGCGCGATTTTGGAAGAGCAAAG
CAGTGACGTGAGTAGCAAAAAACGGAGACGAATTCATGAAAACCCACACA
TCGTCTTCGTGGGCCAGCTTAGCTTTGATACCAGCGCCCACGAGTTGCGA
GAGCACCTGGAGAATGGCGGGGTCACCGGCCCTATACACGTCCGATTGCT
GACCGAGAAAGGCTCGAACAAGTCTCGAGGCCAAGCCTTTGTCACGCTTA
TTGATGCTGAGAATCAATACAAATGCCTGTCTTTGCACCACAGCAAGCTA
AAGAATCGAGTCATCAATGTGGAGCGCTCATGTGGGGGCCGTAACCTGGA
CAAGCGGAAGGGAAAGCTGCAAGCCTTGCGGAGGGAGCAACGGGAGGCGA
TTGAGACCACCTGCGATCGTATTGTCAAAGAAAAAACAGAAGCGGGACAG
CTACTGCCAGGAGAGCTGGATGAGCAGGCCGTGAAGCTGCTGACTCGAAC
GATCGAGAGCGCGAGTTTGACTGGCGACGTCCTACCTGATGAACGAATTA
CAATTATCATGCGTGTCAACGGACAGCCCGTCTCTTGTCGTAAGGGATAG back to topprotein sequence of rna5232 >rna5232-protein ID=rna5232-protein|Name=rna5232|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MLGRLSFLAIASTILMLAVQITGFVGLLPGACKRAADIQNSMYQWPFVRT
GTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELV
ATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGK
DRSPSPPPDSTPPPTA back to topmRNA from alignment at CM002465.1:485732..487103- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5232 ID=rna5232|Name=rna5232|organism=Nannochloropsis gaditana|type=mRNA|length=1372bp|location=Sequence derived from alignment at CM002465.1:485732..487103- (Nannochloropsis gaditana)
AGTGAAGGGTGCCCGATGGGGTGTATCGCGAAGGAAGCGAAGTTTGTTTT
CCTTGGGGCTTCAGTGCATGTAAGAGTCTACGTTGTGGACCATGAAAGGG
GCCTCTCGAATTGAATGCCGACTAGCACGGATGGAGGACGTACATACCCT
TGACATTGTCCACCGTTTTCCCTTTCACATTCGGGAAAATTTTGTCTGAA
AAGTTGTAAAGGCGTTTACAACATCTTACTTGAAGTCTCTAGGGGTCGAA
CGGATGTATCTATCTATTTTTGTTACAGTGCAAGTCAGGAGCCTACGTGC
ACGCGCATTTTTTAGGAAATCGCGTACCATACACAAGCTAGCGCACGACG
ACGACCAATAACATGCATCCAACTAGTGAACTTCCTGGTAACATAAAAAC
ATAAACTGATGAAAGTCTTATAATTCCTCTCGTCTGGTCATTATAGTGCA
GTAGTCATGTTGGGCCGCCTATCGTTCCTTGCGATAGCGTCTACAATATT
GATGCTGGCCGTGCAGATAACTGGATTCGTGGGTCTACTACCAGGGGCAT
GCAAGAGAGCGGCCGATATTCAGAATTCAATGTATCAATGGCCATTTGTC
AGAACGGGCACTGAAGGACCAACACGGAGGGTGAGCTTTGACGGGCACAA
GCGCAGGTACAAGGTTGTACCACTTTTGCAATGCGGCATCCTCAACATCA
CTTTTAATATTCTAACACACGCAGGAAGACAGAACTTTTTGGTCTTCATT
AGCATTGTGTGCGAAGAAGAATAAGGAATCTGATGTAATCGAGGTGCGTA
CTTGAGGAAGGAAAAAGACGTTCATGCCAAATCCTTGACTAGTCACCAAT
ATGTCTTCAAATGATAGGTGGACGGCATCGTGAAGGAATCGCTTCCGAAT
GCAAAATTTCGTGTAGAACTTGTGGCAACTAAGGCTGTTATTGTCTGCTC
CACGTCCGGAAAAATGCGCAAGAATTTCGTGCGCGTTCTTGTCGGAGATC
CCGTCAAGGTGGAGCTTTCCCCTTACGATTTGACCCGTGGCCGTATCACA
TATCGCTCGCGAGGCCCTGGAAAGGATCGTTCTCCCTCGCCTCCACCAGA
CTCGACCCCTCCTCCAACGGCGTAGCCCCAGGAGTGTAGAGAAGAGTGTT
CACCCTTGGAGGAGGTGCCAAGTAAGACGGACACGAGGCCATTCCGTCTC
TTTCAAATCCAGAACTACAAGCGTGGCCGCGATTCCAAGCTCTCAGGCCT
GACCTTTCTTTTCCAGATCCTCCTCTCCGATCTCCTCGTTATGTTTTCTT
GTGGTCGTGCGATTATAATTTTCTTCCACATGTCTCTTTAAAGAAAAAGC
GAAGACAAATTAAATATTTCGC back to topCoding sequence (CDS) from alignment at CM002465.1:485732..487103- >rna5232 ID=rna5232|Name=rna5232|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at CM002465.1:485732..487103- (Nannochloropsis gaditana)
GTGGACGGCATCGTGAAGGAATCGCTTCCGAATGCAAAATTTCGTGTAGA
ACTTGTGGCAACTAAGGCTGTTATTGTCTGCTCCACGTCCGGAAAAATGC
GCAAGAATTTCGTGCGCGTTCTTGTCGGAGATCCCGTCAAGGTGGAGCTT
TCCCCTTACGATTTGACCCGTGGCCGTATCACATATCGCTCGCGAGGCCC
TGGAAAGGATCGTTCTCCCTCGCCTCCACCAGACTCGACCCCTCCTCCAA
CGGCGTAGGAAGACAGAACTTTTTGGTCTTCATTAGCATTGTGTGCGAAG
AAGAATAAGGAATCTGATGTAATCGAGATGTTGGGCCGCCTATCGTTCCT
TGCGATAGCGTCTACAATATTGATGCTGGCCGTGCAGATAACTGGATTCG
TGGGTCTACTACCAGGGGCATGCAAGAGAGCGGCCGATATTCAGAATTCA
ATGTATCAATGGCCATTTGTCAGAACGGGCACTGAAGGACCAACACGGAG
GGTGGACGGCATCGTGAAGGAATCGCTTCCGAATGCAAAATTTCGTGTAG
AACTTGTGGCAACTAAGGCTGTTATTGTCTGCTCCACGTCCGGAAAAATG
CGCAAGAATTTCGTGCGCGTTCTTGTCGGAGATCCCGTCAAGGTGGAGCT
TTCCCCTTACGATTTGACCCGTGGCCGTATCACATATCGCTCGCGAGGCC
CTGGAAAGGATCGTTCTCCCTCGCCTCCACCAGACTCGACCCCTCCTCCA
ACGGCGTAGGAAGACAGAACTTTTTGGTCTTCATTAGCATTGTGTGCGAA
GAAGAATAAGGAATCTGATGTAATCGAGATGTTGGGCCGCCTATCGTTCC
TTGCGATAGCGTCTACAATATTGATGCTGGCCGTGCAGATAACTGGATTC
GTGGGTCTACTACCAGGGGCATGCAAGAGAGCGGCCGATATTCAGAATTC
AATGTATCAATGGCCATTTGTCAGAACGGGCACTGAAGGACCAACACGGA
GGGTGGACGGCATCGTGAAGGAATCGCTTCCGAATGCAAAATTTCGTGTA
GAACTTGTGGCAACTAAGGCTGTTATTGTCTGCTCCACGTCCGGAAAAAT
GCGCAAGAATTTCGTGCGCGTTCTTGTCGGAGATCCCGTCAAGGTGGAGC
TTTCCCCTTACGATTTGACCCGTGGCCGTATCACATATCGCTCGCGAGGC
CCTGGAAAGGATCGTTCTCCCTCGCCTCCACCAGACTCGACCCCTCCTCC
AACGGCGTAGGAAGACAGAACTTTTTGGTCTTCATTAGCATTGTGTGCGA
AGAAGAATAAGGAATCTGATGTAATCGAGATGTTGGGCCGCCTATCGTTC
CTTGCGATAGCGTCTACAATATTGATGCTGGCCGTGCAGATAACTGGATT
CGTGGGTCTACTACCAGGGGCATGCAAGAGAGCGGCCGATATTCAGAATT
CAATGTATCAATGGCCATTTGTCAGAACGGGCACTGAAGGACCAACACGG
AGG back to top
|