EWM25462.1, cds5219 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|585107223|gb|EWM25462.1| (translation initiation factor if-1 [Nannochloropsis gaditana]) HSP 1 Score: 337.806 bits (865), Expect = 1.778e-117 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query: 1 MLGRLSFLAIASTILMLAVQITGFVGLLPGACKRAADIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRSPSPPPDSTPPPTA 166
MLGRLSFLAIASTILMLAVQITGFVGLLPGACKRAADIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRSPSPPPDSTPPPTA
Sbjct: 1 MLGRLSFLAIASTILMLAVQITGFVGLLPGACKRAADIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRSPSPPPDSTPPPTA 166
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1085554846|gb|OGX10186.1| (translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium GWA2_37_7] >gi|1085571120|gb|OGX25221.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium GWF2_38_59] >gi|1085595547|gb|OGX47893.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYA2_FULL_38_17] >gi|1085602274|gb|OGX54147.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYA12_FULL_38_10] >gi|1085604503|gb|OGX56230.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYC2_FULL_38_12] >gi|1085608739|gb|OGX60265.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYB2_FULL_38_16]) HSP 1 Score: 99.3673 bits (246), Expect = 1.669e-24 Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 0
Query: 76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
+ D+IEV+GIVKE+LPNAKFRVEL ++ SGK+RK+F+R+L GD VKVELSPYDLTRGRITYR++
Sbjct: 3 KEDLIEVEGIVKEALPNAKFRVEL-ENGHIVQAHISGKIRKHFIRILPGDKVKVELSPYDLTRGRITYRNK 72
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|298715651|emb|CBJ28177.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 100.908 bits (250), Expect = 2.485e-24 Identity = 45/64 (70.31%), Postives = 58/64 (90.62%), Query Frame = 0
Query: 81 EVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 144
+V+G+VKE LP+A FRVE+ AT V++C+ SG++RKNFVR+LVGDPV+VELSPYDLTRGRIT+R
Sbjct: 65 KVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 128
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|394445485|gb|EJF06393.1| (translation initiation factor IF-1 [Thiovulum sp. ES]) HSP 1 Score: 98.9821 bits (245), Expect = 2.860e-24 Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
+SDVIEVDG V E+LPNA FRVEL K VI+C +GKMR N++R+L GD VKVEL+PY L +GRITYR +
Sbjct: 3 KSDVIEVDGTVVEALPNATFRVELNKNKHVILCHIAGKMRMNYIRILPGDTVKVELTPYSLDKGRITYRYK 73
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1085583787|gb|OGX36932.1| (translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_50_17] >gi|1085589538|gb|OGX42306.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_50_9]) HSP 1 Score: 98.2117 bits (243), Expect = 4.116e-24 Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 0
Query: 76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 144
+ ++IEV+GIVKE+LPNA FRVEL K +++ SGK+RKNF+R+L GD VKVELSPYDLTRGRITYR
Sbjct: 3 KEELIEVEGIVKEALPNAMFRVEL-ENKHMVLAHISGKIRKNFIRILPGDSVKVELSPYDLTRGRITYR 70
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|503216943|ref|WP_013451604.1| (translation initiation factor IF-1 [Calditerrivibrio nitroreducens] >gi|312940201|gb|ADR19393.1| bacterial translation initiation factor 1 (bIF-1) [Calditerrivibrio nitroreducens DSM 19672]) HSP 1 Score: 98.2117 bits (243), Expect = 4.564e-24 Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 0
Query: 75 KESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
K+ DVIE +G+V E+LPNA F+VEL K VI+C SGKMR NF+R+L GD V VE+SPYDLT+GRITYR +
Sbjct: 3 KKDDVIEFEGVVLEALPNAMFKVEL-ENKHVILCHLSGKMRMNFIRILPGDKVTVEMSPYDLTKGRITYRHK 73
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1028412923|gb|OAI43363.1| (translation initiation factor IF-1 [Rhizomicrobium sp. SCGC AG-212-E05]) HSP 1 Score: 96.6709 bits (239), Expect = 1.757e-23 Identity = 41/71 (57.75%), Postives = 58/71 (81.69%), Query Frame = 0
Query: 76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
+ +++E +GIV+E LPNA FRV+L+A + +I+ T+GKMRKN +RVL GD V +E++PYDLT+GRITYR R
Sbjct: 3 KEELLEFEGIVEELLPNATFRVKLIANEHIIIAHTAGKMRKNRIRVLTGDKVMIEMTPYDLTKGRITYRFR 73
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1113118884|gb|OJT94949.1| (translation initiation factor IF-1 [Alphaproteobacteria bacterium 65-7]) HSP 1 Score: 95.9005 bits (237), Expect = 4.101e-23 Identity = 41/71 (57.75%), Postives = 57/71 (80.28%), Query Frame = 0
Query: 76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
+ +++E +GIV+E LPNA FRV+L+A +I+ T+GKMRKN +RVL GD V +E++PYDLT+GRITYR R
Sbjct: 3 KEELLEFEGIVEELLPNATFRVKLIANDHIIIAHTAGKMRKNRIRVLTGDKVMIEMTPYDLTKGRITYRFR 73
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|655037700|ref|WP_028486457.1| (translation initiation factor IF-1 [Thiomicrospira chilensis]) HSP 1 Score: 95.5153 bits (236), Expect = 5.014e-23 Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 0
Query: 76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
+ DVIE DG+V E+LPN FRVEL I+ SG+MRKN++R+L GDPVKVEL+PYDLT+GRITYR +
Sbjct: 3 KQDVIEFDGVVIETLPNTMFRVEL-ENGHQILAHISGRMRKNYIRILAGDPVKVELTPYDLTKGRITYRGK 72
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1083714266|gb|OGH99643.1| (translation initiation factor IF-1 [Candidatus Margulisbacteria bacterium GWD2_39_127] >gi|1083720874|gb|OGI04624.1| translation initiation factor IF-1 [Candidatus Margulisbacteria bacterium GWF2_38_17] >gi|1083728871|gb|OGI11844.1| translation initiation factor IF-1 [Candidatus Margulisbacteria bacterium GWE2_39_32]) HSP 1 Score: 95.1301 bits (235), Expect = 6.872e-23 Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 0
Query: 76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 144
+ D+IEV+G + E++PNA FRVEL T VI+ SGK+RKNF+RVL+GD VK+ELSPYDLT+GRITYR
Sbjct: 3 KKDIIEVEGKIVETMPNAMFRVEL-DTGQVILAHVSGKIRKNFIRVLLGDRVKIELSPYDLTKGRITYR 70 The following BLAST results are available for this feature:
BLAST of EWM25462.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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