EWM25462.1, cds5219 (CDS) Nannochloropsis gaditana

Overview
NameEWM25462.1
Unique Namecds5219
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:486474..486647 -
Alignment locationCM002465.1:486311..486379 -
Alignment locationCM002465.1:485979..486236 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25462.1
Producttranslation initiation factor if-1
Orig transcript idgnl|cribi|Naga_100005g19.6756.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:486474..486647 -
CM002465.1supercontigCM002465.1:486311..486379 -
CM002465.1supercontigCM002465.1:485979..486236 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR006196RNA-binding_domain_S1_IF1
IPR012340NA-bd_OB-fold
IPR004368TIF_IF1
Homology
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|585107223|gb|EWM25462.1| (translation initiation factor if-1 [Nannochloropsis gaditana])

HSP 1 Score: 337.806 bits (865), Expect = 1.778e-117
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MLGRLSFLAIASTILMLAVQITGFVGLLPGACKRAADIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRSPSPPPDSTPPPTA 166
            MLGRLSFLAIASTILMLAVQITGFVGLLPGACKRAADIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRSPSPPPDSTPPPTA
Sbjct:    1 MLGRLSFLAIASTILMLAVQITGFVGLLPGACKRAADIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRSPSPPPDSTPPPTA 166          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1085554846|gb|OGX10186.1| (translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium GWA2_37_7] >gi|1085571120|gb|OGX25221.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium GWF2_38_59] >gi|1085595547|gb|OGX47893.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYA2_FULL_38_17] >gi|1085602274|gb|OGX54147.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYA12_FULL_38_10] >gi|1085604503|gb|OGX56230.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYC2_FULL_38_12] >gi|1085608739|gb|OGX60265.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYB2_FULL_38_16])

HSP 1 Score: 99.3673 bits (246), Expect = 1.669e-24
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 0
Query:   76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
            + D+IEV+GIVKE+LPNAKFRVEL     ++    SGK+RK+F+R+L GD VKVELSPYDLTRGRITYR++
Sbjct:    3 KEDLIEVEGIVKEALPNAKFRVEL-ENGHIVQAHISGKIRKHFIRILPGDKVKVELSPYDLTRGRITYRNK 72          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|298715651|emb|CBJ28177.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.908 bits (250), Expect = 2.485e-24
Identity = 45/64 (70.31%), Postives = 58/64 (90.62%), Query Frame = 0
Query:   81 EVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 144
            +V+G+VKE LP+A FRVE+ AT  V++C+ SG++RKNFVR+LVGDPV+VELSPYDLTRGRIT+R
Sbjct:   65 KVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 128          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|394445485|gb|EJF06393.1| (translation initiation factor IF-1 [Thiovulum sp. ES])

HSP 1 Score: 98.9821 bits (245), Expect = 2.860e-24
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
            +SDVIEVDG V E+LPNA FRVEL   K VI+C  +GKMR N++R+L GD VKVEL+PY L +GRITYR +
Sbjct:    3 KSDVIEVDGTVVEALPNATFRVELNKNKHVILCHIAGKMRMNYIRILPGDTVKVELTPYSLDKGRITYRYK 73          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1085583787|gb|OGX36932.1| (translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_50_17] >gi|1085589538|gb|OGX42306.1| translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_50_9])

HSP 1 Score: 98.2117 bits (243), Expect = 4.116e-24
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 0
Query:   76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 144
            + ++IEV+GIVKE+LPNA FRVEL   K +++   SGK+RKNF+R+L GD VKVELSPYDLTRGRITYR
Sbjct:    3 KEELIEVEGIVKEALPNAMFRVEL-ENKHMVLAHISGKIRKNFIRILPGDSVKVELSPYDLTRGRITYR 70          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|503216943|ref|WP_013451604.1| (translation initiation factor IF-1 [Calditerrivibrio nitroreducens] >gi|312940201|gb|ADR19393.1| bacterial translation initiation factor 1 (bIF-1) [Calditerrivibrio nitroreducens DSM 19672])

HSP 1 Score: 98.2117 bits (243), Expect = 4.564e-24
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 0
Query:   75 KESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
            K+ DVIE +G+V E+LPNA F+VEL   K VI+C  SGKMR NF+R+L GD V VE+SPYDLT+GRITYR +
Sbjct:    3 KKDDVIEFEGVVLEALPNAMFKVEL-ENKHVILCHLSGKMRMNFIRILPGDKVTVEMSPYDLTKGRITYRHK 73          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1028412923|gb|OAI43363.1| (translation initiation factor IF-1 [Rhizomicrobium sp. SCGC AG-212-E05])

HSP 1 Score: 96.6709 bits (239), Expect = 1.757e-23
Identity = 41/71 (57.75%), Postives = 58/71 (81.69%), Query Frame = 0
Query:   76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
            + +++E +GIV+E LPNA FRV+L+A + +I+  T+GKMRKN +RVL GD V +E++PYDLT+GRITYR R
Sbjct:    3 KEELLEFEGIVEELLPNATFRVKLIANEHIIIAHTAGKMRKNRIRVLTGDKVMIEMTPYDLTKGRITYRFR 73          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1113118884|gb|OJT94949.1| (translation initiation factor IF-1 [Alphaproteobacteria bacterium 65-7])

HSP 1 Score: 95.9005 bits (237), Expect = 4.101e-23
Identity = 41/71 (57.75%), Postives = 57/71 (80.28%), Query Frame = 0
Query:   76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
            + +++E +GIV+E LPNA FRV+L+A   +I+  T+GKMRKN +RVL GD V +E++PYDLT+GRITYR R
Sbjct:    3 KEELLEFEGIVEELLPNATFRVKLIANDHIIIAHTAGKMRKNRIRVLTGDKVMIEMTPYDLTKGRITYRFR 73          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|655037700|ref|WP_028486457.1| (translation initiation factor IF-1 [Thiomicrospira chilensis])

HSP 1 Score: 95.5153 bits (236), Expect = 5.014e-23
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 0
Query:   76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 146
            + DVIE DG+V E+LPN  FRVEL      I+   SG+MRKN++R+L GDPVKVEL+PYDLT+GRITYR +
Sbjct:    3 KQDVIEFDGVVIETLPNTMFRVEL-ENGHQILAHISGRMRKNYIRILAGDPVKVELTPYDLTKGRITYRGK 72          
BLAST of EWM25462.1 vs. NCBI_GenBank
Match: gi|1083714266|gb|OGH99643.1| (translation initiation factor IF-1 [Candidatus Margulisbacteria bacterium GWD2_39_127] >gi|1083720874|gb|OGI04624.1| translation initiation factor IF-1 [Candidatus Margulisbacteria bacterium GWF2_38_17] >gi|1083728871|gb|OGI11844.1| translation initiation factor IF-1 [Candidatus Margulisbacteria bacterium GWE2_39_32])

HSP 1 Score: 95.1301 bits (235), Expect = 6.872e-23
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 0
Query:   76 ESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 144
            + D+IEV+G + E++PNA FRVEL  T  VI+   SGK+RKNF+RVL+GD VK+ELSPYDLT+GRITYR
Sbjct:    3 KKDIIEVEGKIVETMPNAMFRVEL-DTGQVILAHVSGKIRKNFIRVLLGDRVKIELSPYDLTKGRITYR 70          
The following BLAST results are available for this feature:
BLAST of EWM25462.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107223|gb|EWM25462.1|1.778e-117100.00translation initiation factor if-1 [Nannochloropsi... [more]
gi|1085554846|gb|OGX10186.1|1.669e-2466.20translation initiation factor IF-1 [Omnitrophica W... [more]
gi|298715651|emb|CBJ28177.1|2.485e-2470.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|394445485|gb|EJF06393.1|2.860e-2464.79translation initiation factor IF-1 [Thiovulum sp. ... [more]
gi|1085583787|gb|OGX36932.1|4.116e-2468.12translation initiation factor IF-1 [Omnitrophica W... [more]
gi|503216943|ref|WP_013451604.1|4.564e-2463.89translation initiation factor IF-1 [Calditerrivibr... [more]
gi|1028412923|gb|OAI43363.1|1.757e-2357.75translation initiation factor IF-1 [Rhizomicrobium... [more]
gi|1113118884|gb|OJT94949.1|4.101e-2357.75translation initiation factor IF-1 [Alphaproteobac... [more]
gi|655037700|ref|WP_028486457.1|5.014e-2361.97translation initiation factor IF-1 [Thiomicrospira... [more]
gi|1083714266|gb|OGH99643.1|6.872e-2365.22translation initiation factor IF-1 [Candidatus Mar... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5232rna5232Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications