rna5229, rna5229 (mRNA) Nannochloropsis gaditana

Overview
Namerna5229
Unique Namerna5229
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1574
Alignment locationCM002465.1:479717..480663 -

Link to JBrowse

Properties
Property NameValue
Productcyclophilin
Orig transcript idgnl|cribi|Naga_100005g16.6707.mrna
Orig protein idgnl|cribi|Naga_100005g16.6707
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:479717..480663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g16gene5049Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5229rna5229-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25413.1cds5216Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5229 ID=rna5229|Name=rna5229|organism=Nannochloropsis gaditana|type=mRNA|length=1574bp
CTATGGCGCAACGATCTCACACTACATTGCTTTCCACGTTGCACAGGTAG
CTTACAGCAGTACGGCAGAATCGATGAGGACAAGCGCGTCACGTCCACCT
CATTGGCGGTGGACTTCATGGTTTCCATCTTCCCAGCGTGCTTCCTCCTC
ATGGCTTCCCCTCCTGCTCGTCACTTTCCTTCTTCTATCGCCGTACTTAG
CCGCGTCTTCCTCGCGACAGTATGCTTCCAGCACTGCCACCAGAACATCG
CTTAGTCTAGAAACGAGGCGACTTGGAGATGATGTCCCGTCCAAATTTGC
GCAAAAGGTCGTCGGAAGACCTTCTCGAAGAAGACAGCGACGTACATCTA
TCGCTCTTGCCGACGGGGGTCGAATACAAGAGCTTCTCGCACGGATGAAC
AGCGGCACGCGTCTGGCTTTGGCCGGCGCGTTGGCGGGTGGTTTTAGCAA
CATGGTGCTCTACCCCATCGACGTTGCGAAGACGCTGCGTCAGGCGGGAC
CAGCCTCGAGGGGTGCGTCCCTCTCGTCACAAGCCCGCATCTATGGGTTG
GGCTCCCTGTGGGCAGGCCTGACACCCGCCGTGCTCGGATCCATGCCCTC
CTCAGCGTTGTACTTCGGTGTGTACGAGTATGTAAAGCGCCGTTTGGTCG
CCGGCATCAGGCCGCGCACCGAGGCGTCGTCCTCAATCTCGAGCGACGGG
AGCAAGGAGCTCTACCACCGGCGTGTTCAAGTTCTACGACGCTGGACGGC
TCACGCCTTAGCAGCCGCCGCAGGAAACACCGCCAGTTCTTTAATCTTTG
TACCGAAAGAAGTACTGAAACAGCAGCTGCAGATGTACCGCAACGCCCAC
GGAGGAGCGAGTCTGGGCTTCCCGGGGGTCTTCGCATCCATCCTCAGGGA
GAAGGGCGTCAGAGGCCTTTACAGCGGTTACCGCGCGACGTTGCTTCGCA
ACATCCCGTCGGCTGTCCTCCGCTTTGCTCTCTACGAGGAGTTCAAATTG
TACCTGGGGGGGCAGGCCTTGTCGGGCGCTATCTCCCTGAGTGGACCGCG
CGTGGCCGTGGTCGCGGGAGCCCTAGCCGGAGCCCTCTCGAGCGCAGCCA
CAACTCCTCTCGACGTGATCAAGACGCGCATGGCGATCAACGCCTGCCCC
CCCGGCCGCGATGTCCTGGGCTGCTTGCTAGACGTTGCTCAGAAGGAGGG
GGTGCCGGGGCTCTACGCGGGCGTGCGGTTCAGGGTCATGTACTCGGCTC
TCTTCACGGCGGTGGGATTTTCCTCCTTCGAGGCGAGCAAGGCCTTGCTG
GGCGTTGGAGAGGCAGGGGGGGAAGAGGACGCGAAGGGATCGGGTCGACA
CTAATGGGCTGGCGGGGGAAAGGGGTGAGGGGCCGCGCCCCAACTGGAGC
AGAGAAGTGAGCGGCAGCAAAGTCGTGTTTTGAGATGCGTGAGGTTACGG
TCTGTGGTAAATTTCTGCCCGGCTTGTACAATATCGTGATGGGAGCACAG
GGCGACAAGGAACCCCAGGCCCCGGGGGCGAGCAAGCCCTTTGTAACAAA
GAAACAAATCTTTACCGCATCGGT
back to top

protein sequence of rna5229

>rna5229-protein ID=rna5229-protein|Name=rna5229|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MAFAKSLAFMLGMATFALSQADDLTKVTHKVFFDINVADKPAGRIVFGLY
GNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFT
HNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVV
TSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGELK
back to top

mRNA from alignment at CM002465.1:479717..480663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5229 ID=rna5229|Name=rna5229|organism=Nannochloropsis gaditana|type=mRNA|length=947bp|location=Sequence derived from alignment at CM002465.1:479717..480663- (Nannochloropsis gaditana)
ATGGCCTTTGCCAAGTCTCTTGCGTTCATGCTCGGCATGGCCACCTTCGC
TCTCAGGTTCGTGTAGGTCCTCTGGCCATGGTGCTTCATCCCTCGATCGC
GAAACCCGATGAATCGCATTTAAGACCTATTTTCTTGATCTTTTACAATT
CTTTGCCATACTTACAGTCAAGCTGATGACCTCACGAAAGTAACGCACAA
AGTTTTTTTCGACATCAATGTAGCGGATAAGGTACGTGAATGTGAAGAGA
GAAGTTTTTAGCAGCGACGCGACTCATCACTCCTTTGTCATCTCCTGCTT
TTCTCTCCCGACCGGCACAATTTTGCAGCCTGCTGGTCGTATTGTCTTTG
GACTGTATGGGAACACCGTACCCAGGACGGTTGAAAACTTCCGTGCGCTC
TGCACCGGCGAGAAAGGAATTGGAGGCGCAGGCCGCCCCCTCCACTACAA
GGGTTCAAAATTTCACCGAGTGATCCCCTCCTTCATGCTGCAGGGGGGCG
ATTTCACTCACAACAATGGCATGGGCGGAGAGTCCATCTACGGGTTAGTA
CTAGAATTCTAAGAAATGGGGGCTGGTTCTGGGGGAAAGTTTCGGAGTTG
TTGTGGCGATTCACGGACAAAGAGCTGTAAATACTCTGATTGCTCACCGA
GCGTTCTCCGTGCACGCTCATCCCTATCGCCGTGACAGCGGTAGGTTCGC
TGACGAGAACTTCAAATTGAAGCACACCCGACCCGGCCTCCTCTCCATGG
CGAACGCAGGGCGCGACACGAACGGCTCCCAGTTCTTCATCACCACCGTA
GTGACCTCCTGGCTCGACGGGCGCCACGTCGTTTTCGGAGAGGTTCTGGA
AGGTATGGACGTAGTGAAGATGATCGAGGGCCTGGGCAGCGATGACGGGA
CCGTGAAGAAGCCCGTGATCATCGCGGACTCCGGCGAGCTCAAGTAG
back to top

Coding sequence (CDS) from alignment at CM002465.1:479717..480663-

>rna5229 ID=rna5229|Name=rna5229|organism=Nannochloropsis gaditana|type=CDS|length=2376bp|location=Sequence derived from alignment at CM002465.1:479717..480663- (Nannochloropsis gaditana)
CGGTAGGTTCGCTGACGAGAACTTCAAATTGAAGCACACCCGACCCGGCC
TCCTCTCCATGGCGAACGCAGGGCGCGACACGAACGGCTCCCAGTTCTTC
ATCACCACCGTAGTGACCTCCTGGCTCGACGGGCGCCACGTCGTTTTCGG
AGAGGTTCTGGAAGGTATGGACGTAGTGAAGATGATCGAGGGCCTGGGCA
GCGATGACGGGACCGTGAAGAAGCCCGTGATCATCGCGGACTCCGGCGAG
CTCAAGTAGCCTGCTGGTCGTATTGTCTTTGGACTGTATGGGAACACCGT
ACCCAGGACGGTTGAAAACTTCCGTGCGCTCTGCACCGGCGAGAAAGGAA
TTGGAGGCGCAGGCCGCCCCCTCCACTACAAGGGTTCAAAATTTCACCGA
GTGATCCCCTCCTTCATGCTGCAGGGGGGCGATTTCACTCACAACAATGG
CATGGGCGGAGAGTCCATCTACGGTCAAGCTGATGACCTCACGAAAGTAA
CGCACAAAGTTTTTTTCGACATCAATGTAGCGGATAAGATGGCCTTTGCC
AAGTCTCTTGCGTTCATGCTCGGCATGGCCACCTTCGCTCTCAGCGGTAG
GTTCGCTGACGAGAACTTCAAATTGAAGCACACCCGACCCGGCCTCCTCT
CCATGGCGAACGCAGGGCGCGACACGAACGGCTCCCAGTTCTTCATCACC
ACCGTAGTGACCTCCTGGCTCGACGGGCGCCACGTCGTTTTCGGAGAGGT
TCTGGAAGGTATGGACGTAGTGAAGATGATCGAGGGCCTGGGCAGCGATG
ACGGGACCGTGAAGAAGCCCGTGATCATCGCGGACTCCGGCGAGCTCAAG
TAGCCTGCTGGTCGTATTGTCTTTGGACTGTATGGGAACACCGTACCCAG
GACGGTTGAAAACTTCCGTGCGCTCTGCACCGGCGAGAAAGGAATTGGAG
GCGCAGGCCGCCCCCTCCACTACAAGGGTTCAAAATTTCACCGAGTGATC
CCCTCCTTCATGCTGCAGGGGGGCGATTTCACTCACAACAATGGCATGGG
CGGAGAGTCCATCTACGGTCAAGCTGATGACCTCACGAAAGTAACGCACA
AAGTTTTTTTCGACATCAATGTAGCGGATAAGATGGCCTTTGCCAAGTCT
CTTGCGTTCATGCTCGGCATGGCCACCTTCGCTCTCAGCGGTAGGTTCGC
TGACGAGAACTTCAAATTGAAGCACACCCGACCCGGCCTCCTCTCCATGG
CGAACGCAGGGCGCGACACGAACGGCTCCCAGTTCTTCATCACCACCGTA
GTGACCTCCTGGCTCGACGGGCGCCACGTCGTTTTCGGAGAGGTTCTGGA
AGGTATGGACGTAGTGAAGATGATCGAGGGCCTGGGCAGCGATGACGGGA
CCGTGAAGAAGCCCGTGATCATCGCGGACTCCGGCGAGCTCAAGTAGCCT
GCTGGTCGTATTGTCTTTGGACTGTATGGGAACACCGTACCCAGGACGGT
TGAAAACTTCCGTGCGCTCTGCACCGGCGAGAAAGGAATTGGAGGCGCAG
GCCGCCCCCTCCACTACAAGGGTTCAAAATTTCACCGAGTGATCCCCTCC
TTCATGCTGCAGGGGGGCGATTTCACTCACAACAATGGCATGGGCGGAGA
GTCCATCTACGGTCAAGCTGATGACCTCACGAAAGTAACGCACAAAGTTT
TTTTCGACATCAATGTAGCGGATAAGATGGCCTTTGCCAAGTCTCTTGCG
TTCATGCTCGGCATGGCCACCTTCGCTCTCAGCGGTAGGTTCGCTGACGA
GAACTTCAAATTGAAGCACACCCGACCCGGCCTCCTCTCCATGGCGAACG
CAGGGCGCGACACGAACGGCTCCCAGTTCTTCATCACCACCGTAGTGACC
TCCTGGCTCGACGGGCGCCACGTCGTTTTCGGAGAGGTTCTGGAAGGTAT
GGACGTAGTGAAGATGATCGAGGGCCTGGGCAGCGATGACGGGACCGTGA
AGAAGCCCGTGATCATCGCGGACTCCGGCGAGCTCAAGTAGCCTGCTGGT
CGTATTGTCTTTGGACTGTATGGGAACACCGTACCCAGGACGGTTGAAAA
CTTCCGTGCGCTCTGCACCGGCGAGAAAGGAATTGGAGGCGCAGGCCGCC
CCCTCCACTACAAGGGTTCAAAATTTCACCGAGTGATCCCCTCCTTCATG
CTGCAGGGGGGCGATTTCACTCACAACAATGGCATGGGCGGAGAGTCCAT
CTACGGTCAAGCTGATGACCTCACGAAAGTAACGCACAAAGTTTTTTTCG
ACATCAATGTAGCGGATAAGATGGCCTTTGCCAAGTCTCTTGCGTTCATG
CTCGGCATGGCCACCTTCGCTCTCAG
back to top
Synonyms
Publications